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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060656 ID=TCONS_00060656|Name=TCONS_00060656|organism=Clytia hemisphaerica|type=transcript|length=956bp
aggtaTAACAACTTTAAAGCACCAAAGATCTGTGGCGGAGAGAGATATGA
TCGAGTTGCAGAATTTTGTTGTGATGGTGTGAAACTGGCAAAAGAACCTT
TCAAACGGTGCTGTGGAAAGCGTCTTTATGATATCGAATCAGAGCGTTGT
CGAAATGGTTTCGTCTTGATCAAGGAAAAGAGGTGCAGAGGACGAACCTA
CGATCCTAAGGATAGTTTTTGCCACCGATGCCAAGTGTTCTCCCATAATG
AGTTTGTGTATTGCGATGGCAGCCTTTATCCTAAGACATCCCGAAAACAA
ATTTAAAGATCCCTTATGATACCTTCGAAATTCATTTACCATCGTATCAA
TCAATACCAAGTCACGTGACGTTGTATGGATGAATTATtttgtttgcaaa
ataaattattatgaaaatttaaaaattattcatAAGACAAGTATTGTGTT
AGTAAAACTTTCTGTATCCAAGAATTTATAATTTCTTATGGAGTATATTT
CAAATCTTTTAAGATTTGCATGTAATAAGATTATAAGATTTCTGAAATTA
CTTATCAAATTTTGTCCCGGTGGGGGTGGGGCACTCGATtagaaaacgac
catacgtgcggcctaaaattaggcctttgaagtcagacccttacagtgca
aagaaaatttagccaaatttgagtaaatttgtgcaaaaaaacttccctta
cggtgcattttctttaAGATATTTGACCGTTTTTAGGCACGATATGGTCA
AATTTTACTCCTTAGAGTGtacttttctcatctttgctcattttgaCCCT
TACTGTGCATTTTGGTAAGCTTGGAGAAgggacccttaagggccgcacgt
acggtaggtcgtttaACTTGAGTGGCCCCCCTCCACGGAATTTATCCCTT
GTAAAGAAGATATTTAATTAAATAAAGAAACATAAACCAGAAACATCTGA
ATACCA Run BLAST on NCBI transcript from alignment at scaffold_348:484719..487594+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060656 ID=TCONS_00060656|Name=TCONS_00060656|organism=Clytia hemisphaerica|type=transcript|length=2876bp|location=Sequence derived from alignment at scaffold_348:484719..487594+ (Clytia hemisphaerica)
aggtaTAACAACTTTAAAGCACCAAAGATCTGTAAGTCAATTTTCATTAT
AAGTCATTCCCTAATAAATAGCAGCAGATATACATGGGAGAGTTACAAGA
AAAAAAGGTCAATGGGTGCGGAAATATTGTGGAACCACTTTCTAGGAGAT
TCAAGTCAAACATCGTCTTTTAGGTAAGGTGGTAACCCCACCCACTAAAG
TAAGAAAATCCTGTCACAAAATGTTAtttcgattttcattttaaCGGATG
TTGGATCGACATTAACAATATTTTTATCAGGGATATATAGGAAAAAGTGG
CAAAGAAATTGAGtaagaaagaaggaaaaatgCATTATATCGACCTTTGA
CTCGTATGAAGCAAAAAGGGAACACAAAAAGACCATTAAAATAATATGGT
ACATAGTGTTtgttcaaaaaacttttttctaggTAGAGCGATCAGTATAA
AAAGGCCAATGCCGGTAGACATCAggggcggtgcgacacccctgcaaaac
atgcactcgcagggtatgctccagagtcttttttgtcgcagcttgttttt
agcctacccgGAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAGACC
TGGATGAGGTCAAAATGCAGGGTTTGCCCGGGATTTGATGGCTGTTAGTg
tcaaaacgttaaaagtcaAGACTCGTCAAATGGCTTTAGATGCTTGGAGC
AAATTTCCTGaatcactatatatagctgaatctttTTTGCAGCGTATCCT
AAAAATCCTACATACGCCCCTGGACATAGCTGCACATCGCTTGCTTTAAT
TTCAACCTTAAGTACGTGTAAATAACATTTGCTAGTGCTTTTAAGTGTGG
TTATTCAAGCTATAATAGGCAAAGTGCGACATTCTATCATCATGGCTAGA
TTTGTTCTATCAATATCTTTGGTGGTTCTTCTATTTGGTATAACTCTCGG
AGAACAGATTCGTCCGACTCCAGTGATCCACAGATGCCCTACAGCAAAGC
AGAAGTGGAGATATTGTAAGATAACCTTTCAGTATTTGCCAATCACGTGA
ATGTAGCACAAGAACCACAGGCGGCTTTTTGCTGTTGAAGACTCTACCGA
CTGTTTATTTGCTATCCGCAACTACATCGAGGTTTTTGTGATACATGATA
TACTGTTCTACTGTTCTTTGGTGGATAACTTTCACGACATTTGCAAATTC
TTTCCACTTTTACGCGATTTTTGCCAGAGGACATTGATTGGTAAAATTTA
GTCTACACAAAAGTTTTAAATCTAAAATAGGGACTCTCCTAAGGCTTCAG
ACGGTTAAGttttgaataacttttaatTGTATAGCTTTTTGTGCACATGN
GGCTTCAGACGGTTAAGTTTTGAATAACTTTAAATTGTATAGCTTTTTTC
GCACATTTTTGTAGGTGGCGGAGAGAGATATGATCGAGTTGCAGAATTTT
GTTGTGATGGTGTGAAACTGGCAAAAGAACCTTTCAAACGGTGCTGTGGG
TGAGTTAATGTTTGTAAGAATCATTTTCTTTAGCTTTTAGAATCAAACCA
CTAATTCCCAATATCaagatgtttgtttttaatgtttcatTACGATATNa
gctggcacacaacgttgtttcaacgttcatctaacgttatatggacgttg
tgaacgttagataaacgttgaaacaacgttgtgtgccagctgggttagcT
TTTAGAATTAAACCACTAATTCGCAATATCaagatgtttgtttttaatgt
ttcatTACGATATATTTCGAATTATTACAATTTCAGAAAGCGTCTTTATG
ATATCGAATCAGAGCGTTGTCGAAATGGTTTCGTCTTGATCAAGGAAAAG
AGGTGCAGAGGACGAACCTACGATCCTAAGGATAGTTTTTGCCACCGATG
CCAAGTGTTCTCCCATAATGAGTTTGTGTATTGCGATGGCAGCCTTTATC
CTAAGACATCCCGAAAACAAATTTAAAGATCCCTTATGATACCTTCGAAA
TTCATTTACCATCGTATCAATCAATACCAAGTCACGTGACGTTGTATGGA
TGAATTATtttgtttgcaaaataaattattatgaaaatttaaaaattatt
catAAGACAAGTATTGTGTTAGTAAAACTTTCTGTATCCAAGAATTTATA
ATTTCTTATGGAGTATATTTCAAATCTTTTAAGATTTGCATGTAATAAGA
TTATAAGATTTCTGAAATTACTTATCAAATTTTGTCCCGGTGGGGGTGGG
GCACTCGATtagaaaacgaccatacgtgcggcctaaaattaggcctttga
agtcagacccttacagtgcaaagaaaatttagccaaatttgagtaaattt
gtgcaaaaaaacttcccttacggtgcattttctttaAGATATTTGACCGT
TTTTAGGCACGATATGGTCAAATTTTACTCCTTAGAGTGtacttttctca
tctttgctcattttgaCCCTTACTGTGCATTTTGGTAAGCTTGGAGAAgg
gacccttaagggccgcacgtacggtaggtcgtttaACTTGAGTGGCCCCC
CTCCACGGAATTTATCCCTTGTAAAGAAGATATTTAATTAAATAAAGAAA
CATAAACCAGAAACATCTGAATACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060656-exon-scaffold_348-1491911889:484719..484749 | TCONS_00060656-exon-scaffold_348-1491911889:484719..484749 | Clytia hemisphaerica | exon |
| TCONS_00060656-exon-scaffold_348-1510915933:484719..484749 | TCONS_00060656-exon-scaffold_348-1510915933:484719..484749 | Clytia hemisphaerica | exon |
| TCONS_00060656-exon-scaffold_348-1575043694:484719..484749 | TCONS_00060656-exon-scaffold_348-1575043694:484719..484749 | Clytia hemisphaerica | exon |
| TCONS_00060656-exon-scaffold_348-1491911889:486383..486467 | TCONS_00060656-exon-scaffold_348-1491911889:486383..486467 | Clytia hemisphaerica | exon |
| TCONS_00060656-exon-scaffold_348-1510915933:486383..486467 | TCONS_00060656-exon-scaffold_348-1510915933:486383..486467 | Clytia hemisphaerica | exon |
| TCONS_00060656-exon-scaffold_348-1575043694:486383..486467 | TCONS_00060656-exon-scaffold_348-1575043694:486383..486467 | Clytia hemisphaerica | exon |
| TCONS_00060656-exon-scaffold_348-1491911889:486755..487594 | TCONS_00060656-exon-scaffold_348-1491911889:486755..487594 | Clytia hemisphaerica | exon |
| TCONS_00060656-exon-scaffold_348-1510915933:486755..487594 | TCONS_00060656-exon-scaffold_348-1510915933:486755..487594 | Clytia hemisphaerica | exon |
| TCONS_00060656-exon-scaffold_348-1575043694:486755..487594 | TCONS_00060656-exon-scaffold_348-1575043694:486755..487594 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_348 | supercontig | scaffold_348:484719..487594 + |
Blast
The following BLAST results are available for this feature:
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