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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060652 ID=TCONS_00060652|Name=TCONS_00060652|organism=Clytia hemisphaerica|type=transcript|length=1365bp
CCAAGTACTGAGACCATTGCTACCAGAGACTCTAACATGACCAAACCGAA
CACCAAACCATCAACTTTATCTTATCCAAGTAATAATAAGAAGACGACCA
AACCNCGAACACCAAACCATCAACTTTATCGTATCCAAGTAATAATAAGA
AGACGACTAAACAACGTAAACGAGTTGCCTTCAATGAGGAGGTCCAGATG
ACATCCTCAATTCCATCTCTAACATCTCTTGATAAAAATGCAGAAGATTA
TGTCAAAACTTTAGAGGAAATAATCACTAAACATAACGAAACCATTCGAT
GTTTAAGATCGGATAAATCGTCTCTACGTAAAGACCTAACACATACAAAG
TATTCCAGAAAATCATTCATCAAACGTTTCACAATCACTACATTAAAAAA
TGCTTTCCTTAAATCGAAAGTCAAGGATCTTGACGATCAAGTTTTTGCTG
ATGGCGAGATGATGGATATGGCAAGCCAACAATTAGAAAATGTCTATGCT
GAAATGACTGATCAAAGATGTATGATCGACTCACTTAAAGATGAATTGGA
GGActctgaaaatgataaaaatcgtTTACAAAACTCGATGAGCGAAAAGG
ATAAGATCATTGCAACGCGGAACTACAAAATCGCCGATTTACAAGCGGAA
GTTGATACTGGATCAACGCGCATCAACGAATCGAACGTGCGCTATGAAAA
AGCCACGACACGTATCGACGAATTGGTCGCTGTGTGTGCTGATAAAGATA
ATCAGCTTTTGACTAATCAGCAAGAGATTGAGCTCTTACGTAATGAGAAA
AGTAGGCTGGAAGCTAAGCTATTATGTGATGCGAGCGAGAAAAGAACGCT
TGCGCAACGAGTTGCTATGAAGGCATCGCGTGCTGGAAGTTCTCTGAAGA
AATTAAGTAATCCAGGTCGTTGGTGTGGAAGCGCAAGATCAACTCGGTTT
CGAGAAATGGCGGGTGACGAGAGTATGCCCTTTCTACCGGCAACCGAGTG
TGGAGCTGAACAAAGCTCACCGACTGTTGACTCTGTCAGAGACAATACCA
CCATCCTCGCCCCCCTTTCTGCTACCAGTAGCAACACAAGTACCGAAACA
CCTTCCaaacaaaactttaaaatcaatAATAAAGACAGTAAGaaaggcaa
aaaagaaaaaactaagaaatcATCAATGTTTGGTAGAGTCTTCAGAAAAT
CAAAGGCGTTAGAAAAATCGTTGTCAcagacatccactgaattgattgAT
GATAAATGCAAATCTACAATCATCAAAGATGTAGATAATCAAGAAACCAC
CCCGCCCATTGGAACAACGCCCATTGGAACAAGGCCCATTGGAACAACGC
CCATGTCACCAACCC Run BLAST on NCBI protein sequence of TCONS_00060652-protein >TCONS_00060652-protein ID=TCONS_00060652-protein|Name=TCONS_00060652-protein|organism=Clytia hemisphaerica|type=polypeptide|length=389bp
MTSSIPSLTSLDKNAEDYVKTLEEIITKHNETIRCLRSDKSSLRKDLTHT
KYSRKSFIKRFTITTLKNAFLKSKVKDLDDQVFADGEMMDMASQQLENVY
AEMTDQRCMIDSLKDELEDSENDKNRLQNSMSEKDKIIATRNYKIADLQA
EVDTGSTRINESNVRYEKATTRIDELVAVCADKDNQLLTNQQEIELLRNE
KSRLEAKLLCDASEKRTLAQRVAMKASRAGSSLKKLSNPGRWCGSARSTR
FREMAGDESMPFLPATECGAEQSSPTVDSVRDNTTILAPLSATSSNTSTE
TPSKQNFKINNKDSKKGKKEKTKKSSMFGRVFRKSKALEKSLSQTSTELI
DDKCKSTIIKDVDNQETTPPIGTTPIGTRPIGTTPMSPT Run BLAST on NCBI transcript from alignment at scaffold_348:436649..440016+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060652 ID=TCONS_00060652|Name=TCONS_00060652|organism=Clytia hemisphaerica|type=transcript|length=3368bp|location=Sequence derived from alignment at scaffold_348:436649..440016+ (Clytia hemisphaerica)
CCAAGTACTGAGACCATTGCTACCAGAGACTCTAACATGACCAAACCGAA
CACCAAACCATCAACTTTATCTTATCCAAGTAATAATAAGAAGACGACCA
AACCNCGAACACCAAACCATCAACTTTATCGTATCCAAGTAATAATAAGA
AGACGACTAAACAACGTAAACGAGTTGCCTTCAATGAGGAGGTCCAGATG
ACATCCTCAATTCCATCTCTAACATCTCTTGATAAAAATGCAGAAGATTA
TGTCAAAACTTTAGAGGAAATAATCACTAAACATAACGAAACCATTCGAT
GTTTAAGATCGGATAAATCGTCTCTACGTAAAGTAAGTTCTGCTTTCATT
TCACGGTAAAGTAGTTTTGGAGGTGGTTGAATCATAGTCcatacaaaaaa
actttccattgtttcttacttgaacttgcgttggaGAAATTATTTTGCTT
TGCTCGCtatttgatcatgtgattaaatcttaaactaATCCCACGAGgaa
tacttggtaacgtgatcaaaaactgagcaatcgatttttatcttttgaag
gaaaaagctaaaaaaaaaaggttaaaacaataaataagcttccagaccag
agtTGTTTATACGAACTATGGTTGGATATATTagaaaaaagaaagttaaa
cTTGTTGTCAGCAGTTGTCTTTAGGTTAGGCACTTTTTAAAAGCTATCAT
AGGTCTCCCATAATCATAAAATCGAAAAGTATTTTTTGTCATACTGATTT
TCTCAATGAACTATATACTATTCAAataaccccttctcacagacccggta
gatttttttcagccagtagggGTCAAAATAACTGACTGAAAATCGATGGG
GATTGGTATTCCCATATTTCTTATGGCcgggaattttaatttttttgttt
tcaagtcagaaaattcaatggggatggaaaaatagcCGTAACATTTTGCA
GCGAGGTTTGGTTTATTTAATTATTATCAGTGTGCACAAAAAtgggagga
taattttccactggggatgatattttggctaatttttccagtgggaaggg
ttcccagtgggtttgTGAGCGAAGGGGGTATATTCAAATTTTCCGTAATC
AATATCatgaaaaacactttttatttcttttcctaGGACCTAACACATAC
AAAGTATTCCAGAAAATCATTCATCAAACGTTTCACAATCACTACATTAA
AAAATGCTTTCCTTAAATCGAAAGTCAAGGATCTTGACGATCAAGTTTTT
GCTGATGGCGAGATGATGGATATGGCAAGCCAACAATTAGAAAATGTCTA
TGCTGAAATGACTGATCAAAGATGTATGATCGACTCACTTAAAGATGAAT
TGGAGGActctgaaaatgataaaaatcgtTTACAAAACTCGATGAGCGAA
AAGGTAAGGAAAATCAAACTCAAATCCAGTCCCTTAGTTCCCTTTTTCTG
ATTCCAAAGTTCAAGTCCTGCAAGTGGCTTTTGGGTACGATACAtgcaag
tgtctgtccctatatcaggctcgcattatgtttagtttgagaacaataga
gccaatgtttaggtaccaaaaactgagccttcatatgcttataaatgtta
tgcttataaaagaaaaaacatgtattgcagaaaaagtgcactttttttat
atgaacaaattaagaacactTCCAGCCTCAGATTTGACAAATTACTAAGA
AAATACTGCGAATTCTGGTTATATAAAAAGTGGGTGTAATATTTGACAAG
TCACGTGACCTATTTagagcaattccattggtcaaacaCTACTTAAACGC
AATAATATTACGTGGTTCGGCCTACAATtagggtcaaaatatattgggaa
ttttggttaattccttgTTTTCAGATATTTAAAGATCGGAAgaaaaagtc
gcttttgggcaaattgataaattcattcgaatatttcaatttgggagggg
tttatagacttccaggctatattctgagccctatcggaccattcttgaac
ttttagtTCCTCAGATCCTCAGTCTCAACTCTAGCGTTAAAATTCAGAGT
TAAAACACTACtcgtccaacctaatttagagcgcttccaaatcgtttgtg
gttgtaagatttggtgggaatttcccttttttctcaaatattatgacttt
gattgtagtCAATCCGCTCCTTATGAACCATTCATTTCTAAGCCCAAAGA
TGCTAGGTTTAAATCTCTTGTAAGGGAGTGAATCCACTTATTTTTTTATA
CAGCAAATTAGTtcatattcttgaaattttgctgaaagATGCAGAATTTG
GAGACGGGAAAACCTCACTGAGACAAAAGAACTTTAACAGACTATAATAG
AGGCCTTccagtcacctttcaaatcacaaaatcacgCAAAAGAATGTCTA
CATCACGTAATCAcgagttaaatttcctttctatcacgatcacgttaATC
AAGTTGTTTCCTCCAATCACGCAATCATGCACTTTAAGAtcttaaatcac
gaaatcacgaacttgaaaaaacgccaatcacggcatcacgaaaaccgcta
gGGGATCTCAATATATTTAGCAAGTTAATCTACTCTGTCTTTCTCCACAT
AGGATAAGATCATTGCAACGCGGAACTACAAAATCGCCGATTTACAAGCG
GAAGTTGATACTGGATCAACGCGCATCAACGAATCGAACGTGCGCTATGA
AAAAGCCACGACACGTATCGACGAATTGGTCGCTGTGTGTGCTGATAAAG
ATAATCAGCTTTTGACTAATCAGCAAGAGATTGAGCTCTTACGTAATGAG
AAAAGTAGGCTGGAAGCTAAGCTATTATGTGATGCGAGCGAGAAAAGAAC
GCTTGCGCAACGAGTTGCTATGAAGGCATCGCGTGCTGGAAGTTCTCTGA
AGAAATTAAGTAATCCAGGTCGTTGGTGTGGAAGCGCAAGATCAACTCGG
TTTCGAGAAATGGCGGGTGACGAGAGTATGCCCTTTCTACCGGCAACCGA
GTGTGGAGCTGAACAAAGCTCACCGACTGTTGACTCTGTCAGAGACAATA
CCACCATCCTCGCCCCCCTTTCTGCTACCAGTAGCAACACAAGTACCGAA
ACACCTTCCaaacaaaactttaaaatcaatAATAAAGACAGTAAGaaagg
caaaaaagaaaaaactaagaaatcATCAATGTTTGGTAGAGTCTTCAGAA
AATCAAAGGCGTTAGAAAAATCGTTGTCAcagacatccactgaattgatt
gATGATAAATGCAAATCTACAATCATCAAAGATGTAGATAATCAAGAAAC
CACCCCGCCCATTGGAACAACGCCCATTGGAACAAGGCCCATTGGAACAA
CGCCCATGTCACCAACCC Coding sequence (CDS) from alignment at scaffold_348:436649..440016+ >TCONS_00060652 ID=TCONS_00060652|Name=TCONS_00060652|organism=Clytia hemisphaerica|type=CDS|length=3501bp|location=Sequence derived from alignment at scaffold_348:436649..440016+ (Clytia hemisphaerica)
ATGACATCCTCAATTCCATCTCTAACATCTCTTGATAAAAATGCAGAAGA
TTATGTCAAAACTTTAGAGGAAATAATCACTAAACATAACGAAACCATTC
GATGTTTAAGATCGGATAAATCGTCTCTACGTAAAGACCTAACACATACA
AAGTATTCCAGAAAATCATTCATCAAACGTTTCACAATCACTACATTAAA
AAATGCTTTCCTTAAATCGAAAGTCAAGGATCTTGACGATCAAGTTTTTG
CTGATGGCGAGATGATGGATATGGCAAGCCAACAATTAGAAAATGTCTAT
GCTGAAATGACTGATCAAAGATGTATGATCGACTCACTTAAAGATGAATT
GGAGGActctgaaaatgataaaaatcgtTTACAAAACTCGATGAGCGAAA
AGGATAAGATCATTGCAACGCGGAACTACAAAATCGCCGATTTACAAGCG
GAAGTTGATACTGGATCAACGCGCATCAACGAATCGAACGTGCGCTATGA
AAAAGCCACGACACGTATCGACGAATTGGTCGCTGTGTGTGCTGATAAAG
ATAATCAGCTTTTGACTAATCAGCAAGAGATTGAGCTCTTACGTAATGAG
AAAAGTAGGCTGGAAGCTAAGCTATTATGTGATGCGAGCGAGAAAAGAAC
GCTTGCGCAACGAGTTGCTATGAAGGCATCGCGTGCTGGAAGTTCTCTGA
AGAAATTAAGTAATCCAGGTCGTTGGTGTGGAAGCGCAAGATCAACTCGG
TTTCGAGAAATGGCGGGTGACGAGAGTATGCCCTTTCTACCGGCAACCGA
GTGTGGAGCTGAACAAAGCTCACCGACTGTTGACTCTGTCAGAGACAATA
CCACCATCCTCGCCCCCCTTTCTGCTACCAGTAGCAACACAAGTACCGAA
ACACCTTCCaaacaaaactttaaaatcaatAATAAAGACAGTAAGaaagg
caaaaaagaaaaaactaagaaatcATCAATGTTTGGTAGAGTCTTCAGAA
AATCAAAGGCGTTAGAAAAATCGTTGTCAcagacatccactgaattgatt
gATGATAAATGCAAATCTACAATCATCAAAGATGTAGATAATCAAGAAAC
CACCCCGCCCATTGGAACAACGCCCATTGGAACAAGGCCCATTGGAACAA
CGCCCATGTCACCAACCATGACATCCTCAATTCCATCTCTAACATCTCTT
GATAAAAATGCAGAAGATTATGTCAAAACTTTAGAGGAAATAATCACTAA
ACATAACGAAACCATTCGATGTTTAAGATCGGATAAATCGTCTCTACGTA
AAGACCTAACACATACAAAGTATTCCAGAAAATCATTCATCAAACGTTTC
ACAATCACTACATTAAAAAATGCTTTCCTTAAATCGAAAGTCAAGGATCT
TGACGATCAAGTTTTTGCTGATGGCGAGATGATGGATATGGCAAGCCAAC
AATTAGAAAATGTCTATGCTGAAATGACTGATCAAAGATGTATGATCGAC
TCACTTAAAGATGAATTGGAGGActctgaaaatgataaaaatcgtTTACA
AAACTCGATGAGCGAAAAGGATAAGATCATTGCAACGCGGAACTACAAAA
TCGCCGATTTACAAGCGGAAGTTGATACTGGATCAACGCGCATCAACGAA
TCGAACGTGCGCTATGAAAAAGCCACGACACGTATCGACGAATTGGTCGC
TGTGTGTGCTGATAAAGATAATCAGCTTTTGACTAATCAGCAAGAGATTG
AGCTCTTACGTAATGAGAAAAGTAGGCTGGAAGCTAAGCTATTATGTGAT
GCGAGCGAGAAAAGAACGCTTGCGCAACGAGTTGCTATGAAGGCATCGCG
TGCTGGAAGTTCTCTGAAGAAATTAAGTAATCCAGGTCGTTGGTGTGGAA
GCGCAAGATCAACTCGGTTTCGAGAAATGGCGGGTGACGAGAGTATGCCC
TTTCTACCGGCAACCGAGTGTGGAGCTGAACAAAGCTCACCGACTGTTGA
CTCTGTCAGAGACAATACCACCATCCTCGCCCCCCTTTCTGCTACCAGTA
GCAACACAAGTACCGAAACACCTTCCaaacaaaactttaaaatcaatAAT
AAAGACAGTAAGaaaggcaaaaaagaaaaaactaagaaatcATCAATGTT
TGGTAGAGTCTTCAGAAAATCAAAGGCGTTAGAAAAATCGTTGTCAcaga
catccactgaattgattgATGATAAATGCAAATCTACAATCATCAAAGAT
GTAGATAATCAAGAAACCACCCCGCCCATTGGAACAACGCCCATTGGAAC
AAGGCCCATTGGAACAACGCCCATGTCACCAACCATGACATCCTCAATTC
CATCTCTAACATCTCTTGATAAAAATGCAGAAGATTATGTCAAAACTTTA
GAGGAAATAATCACTAAACATAACGAAACCATTCGATGTTTAAGATCGGA
TAAATCGTCTCTACGTAAAGACCTAACACATACAAAGTATTCCAGAAAAT
CATTCATCAAACGTTTCACAATCACTACATTAAAAAATGCTTTCCTTAAA
TCGAAAGTCAAGGATCTTGACGATCAAGTTTTTGCTGATGGCGAGATGAT
GGATATGGCAAGCCAACAATTAGAAAATGTCTATGCTGAAATGACTGATC
AAAGATGTATGATCGACTCACTTAAAGATGAATTGGAGGActctgaaaat
gataaaaatcgtTTACAAAACTCGATGAGCGAAAAGGATAAGATCATTGC
AACGCGGAACTACAAAATCGCCGATTTACAAGCGGAAGTTGATACTGGAT
CAACGCGCATCAACGAATCGAACGTGCGCTATGAAAAAGCCACGACACGT
ATCGACGAATTGGTCGCTGTGTGTGCTGATAAAGATAATCAGCTTTTGAC
TAATCAGCAAGAGATTGAGCTCTTACGTAATGAGAAAAGTAGGCTGGAAG
CTAAGCTATTATGTGATGCGAGCGAGAAAAGAACGCTTGCGCAACGAGTT
GCTATGAAGGCATCGCGTGCTGGAAGTTCTCTGAAGAAATTAAGTAATCC
AGGTCGTTGGTGTGGAAGCGCAAGATCAACTCGGTTTCGAGAAATGGCGG
GTGACGAGAGTATGCCCTTTCTACCGGCAACCGAGTGTGGAGCTGAACAA
AGCTCACCGACTGTTGACTCTGTCAGAGACAATACCACCATCCTCGCCCC
CCTTTCTGCTACCAGTAGCAACACAAGTACCGAAACACCTTCCaaacaaa
actttaaaatcaatAATAAAGACAGTAAGaaaggcaaaaaagaaaaaact
aagaaatcATCAATGTTTGGTAGAGTCTTCAGAAAATCAAAGGCGTTAGA
AAAATCGTTGTCAcagacatccactgaattgattgATGATAAATGCAAAT
CTACAATCATCAAAGATGTAGATAATCAAGAAACCACCCCGCCCATTGGA
ACAACGCCCATTGGAACAAGGCCCATTGGAACAACGCCCATGTCACCAAC
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060652-exon-scaffold_348-1491911889:436649..436980 | TCONS_00060652-exon-scaffold_348-1491911889:436649..436980 | Clytia hemisphaerica | exon |
| TCONS_00060652-exon-scaffold_348-1510915933:436649..436980 | TCONS_00060652-exon-scaffold_348-1510915933:436649..436980 | Clytia hemisphaerica | exon |
| TCONS_00060652-exon-scaffold_348-1575043694:436649..436980 | TCONS_00060652-exon-scaffold_348-1575043694:436649..436980 | Clytia hemisphaerica | exon |
| TCONS_00060652-exon-scaffold_348-1491911889:437785..438051 | TCONS_00060652-exon-scaffold_348-1491911889:437785..438051 | Clytia hemisphaerica | exon |
| TCONS_00060652-exon-scaffold_348-1510915933:437785..438051 | TCONS_00060652-exon-scaffold_348-1510915933:437785..438051 | Clytia hemisphaerica | exon |
| TCONS_00060652-exon-scaffold_348-1575043694:437785..438051 | TCONS_00060652-exon-scaffold_348-1575043694:437785..438051 | Clytia hemisphaerica | exon |
| TCONS_00060652-exon-scaffold_348-1491911889:439251..440016 | TCONS_00060652-exon-scaffold_348-1491911889:439251..440016 | Clytia hemisphaerica | exon |
| TCONS_00060652-exon-scaffold_348-1510915933:439251..440016 | TCONS_00060652-exon-scaffold_348-1510915933:439251..440016 | Clytia hemisphaerica | exon |
| TCONS_00060652-exon-scaffold_348-1575043694:439251..440016 | TCONS_00060652-exon-scaffold_348-1575043694:439251..440016 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_348 | supercontig | scaffold_348:436649..440016 + |
Blast
The following BLAST results are available for this feature:
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