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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060651 ID=TCONS_00060651|Name=TCONS_00060651|organism=Clytia hemisphaerica|type=transcript|length=1112bp
CCACGCCCACGCTGCCGCTGAATCTGTAGATATGAGAAATGATAAAATCG
AAATTGATAATACTCAGACTAATAGAATCAAATCACAATACATTGAAACC
GTTATCACCGAAGATGATAAGACCCTATCAGGGACTTTGGAGAATATATG
TGAACACCAAACCACAACAACTGTTTTCAACGCCAAACCATCGAGAAATA
ACGAGGCTGCTAACATTCACGAATCCAAAGTGTGTGGCATCATTGAAACT
GATGAAAACCATACTGATTCTAATGCCAATATTCTCAAATCTGAAGCTCC
TTTTGAATCAGAAGTTGCTGTAACCAACATACTATCATCCTCCGAAACCA
ATCATGAGCCACAATCTATGTCAAAAACCGATGCTTCCAGCAAATCCGAA
CCACGCCAACATTCTCCCAATGTGGAAGTCGGAAAATCTAATAATTCATC
AGAAGTTTTTGTTTTGCTGGATAACATTGATACTTACTCATCTTATGTAC
TCGTTACTAAAGAAGGTGACAAAATAACAACGTGTAAACTGGTTGACGAA
AATACACAAACAGTTTCATTAAAACCAAATGAGCTGTCCGTCTCTCATAC
AAACAATAAAATGGATAATTCACCATTGACATCGCATACAGAAACTAAAG
AAACATTGATCATTCATACTGTCACCAAAATACAAGAGAATGTATCATTC
CTTACTGACATTTCCACTGCTACTGAGCCTAAAGAAGATTTTAAGCTTGA
TCATTTCTCCACTGATGCAACCACCTCACAAACAGAGAGTAAAGAAACAT
CCAATATTCATACTGCTACAGAGATAAAAGAGAATGTCTCATCCCTTACT
GACATCACCACTGCTTCTGAGCATAAAGGAAATTCTAAACTTCAACCAAA
GACTGAAGATCATCTCTCCACTGCTGCGACCACCTTGCAAACTAAAACAT
CTAGCTTTCAAACAACCACTAAGATGCAGAATCTCTCGACCATTTCTGAT
ATTATCACTATTTCAAAGTCAACAGAAATTGCTAACCGTCAATCCAGCAC
TGAAAATGATCTTTCACCTAACATTGAAGCTAGCTGCGATATGCCAACAT
CCACCAAACCTG Run BLAST on NCBI protein sequence of TCONS_00060651-protein >TCONS_00060651-protein ID=TCONS_00060651-protein|Name=TCONS_00060651-protein|organism=Clytia hemisphaerica|type=polypeptide|length=370bp
HAHAAAESVDMRNDKIEIDNTQTNRIKSQYIETVITEDDKTLSGTLENIC
EHQTTTTVFNAKPSRNNEAANIHESKVCGIIETDENHTDSNANILKSEAP
FESEVAVTNILSSSETNHEPQSMSKTDASSKSEPRQHSPNVEVGKSNNSS
EVFVLLDNIDTYSSYVLVTKEGDKITTCKLVDENTQTVSLKPNELSVSHT
NNKMDNSPLTSHTETKETLIIHTVTKIQENVSFLTDISTATEPKEDFKLD
HFSTDATTSQTESKETSNIHTATEIKENVSSLTDITTASEHKGNSKLQPK
TEDHLSTAATTLQTKTSSFQTTTKMQNLSTISDIITISKSTEIANRQSST
ENDLSPNIEASCDMPTSTKP Run BLAST on NCBI transcript from alignment at scaffold_348:434635..436049+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060651 ID=TCONS_00060651|Name=TCONS_00060651|organism=Clytia hemisphaerica|type=transcript|length=1415bp|location=Sequence derived from alignment at scaffold_348:434635..436049+ (Clytia hemisphaerica)
CCACGCCCACGCTGCCGCTGAATCTGTAGATATGAGAAATGATAAAATCG
AAATTGATAATACTCAGACTAATAGAATCAAATCACAATACATTGAAACC
GTTATCACCGAAGATGATAAGACCCTATCAGGGACTTTGGAGAATATATG
TGAACACCAAACCACAACAACTGTTTTCAACGCCAAACCATCGAGAAATA
ACGAGGCTGCTAACATTCACGAATCCAAAGTGTGTGGCATCATTGAAACT
GATGAAAACCATACTGATTCTAATGCCAATATTCTCAAATCTGAAGCTCC
TTTTGAATCAGAAGTTGCTGTAACCAACATACTATCATCCTCCGAAACCA
ATCATGAGCCACAATCTATGTCAAAAACCGATGCTTCCAGCAAATCCGAA
CCACGCCAACATTCTCCCAATGTGGAAGTCGGAAAATCTAATAATTCATC
AGAAGTTTTTGTTTTGCTGGATAACATTGATACTTACTCATCTTATGTAC
TCGTTACTAAAGAAGGTGACAAAATAACAACGTGTAAACTGGTTGACGAA
AATACACAAACAGTTTCATTAAAACCAAATGAGCTGTCCGTCTCTCATAC
AAACAATAAAATGGATAATTCACCATTGACATCGCATACAGAAACTAAAG
AAACATTGATCATTCATACTGTCACCAAAATACAAGAGAATGTATCATTC
CTTACTGACATTTCCACTGCTACTGAGCCTAAAGAAGATTTTAAACTTGA
ACATTTCTCCACTGATGCAACCACCTCGCAAACAGAGAGTAAAGAAACAT
CCAACATTCATACTGCTACAGAGATAAAAGAGAATGTCTCATTCCTTACT
GACATTTCCACTGCTACTGAGCCTAAAGAAGATTTTAAGCTTGATCATTT
CTCCACTGATGCAACCACCTCACAAACAGAGAGTAAAGAAACATCCAATA
TTCATACTGCTACAGAGATAAAAGAGAATGTCTCATCCCTTACTGACATC
ACCACTGCTTCTGAGCATAAAGGAAGTTCTAAACTCCAACAAAAGACCAA
AGATCATTTCTCCACCACAGCACCCACCTCACAAACAGAGAGTAAAGAAA
CATCCAATATTCATACTGCTACAGAGATAAAAGAGAATGTCTCATCCCTT
ACTGACATTTCCACTACTTCTGAGTCTAAAGGAGATTCTAAACTTCAACC
AAAGACTGAAGATCATCTCTCCACTGCTGCGACCACCTTGCAAACTAAAA
CATCTAGCTTTCAAACAACCACTAAGATGCAGAATCTCTCGACCATTTCT
GATATTATCACTATTTCAAAGTCAACAGAAATTGCTAACCGTCAATCCAG
CACTGAAAATGATCTTTCACCTAACATTGAAGCTAGCTGCGATATGCCAA
CATCCACCAAACCTG Coding sequence (CDS) from alignment at scaffold_348:434635..436049+ >TCONS_00060651 ID=TCONS_00060651|Name=TCONS_00060651|organism=Clytia hemisphaerica|type=CDS|length=3330bp|location=Sequence derived from alignment at scaffold_348:434635..436049+ (Clytia hemisphaerica)
CACGCCCACGCTGCCGCTGAATCTGTAGATATGAGAAATGATAAAATCGA
AATTGATAATACTCAGACTAATAGAATCAAATCACAATACATTGAAACCG
TTATCACCGAAGATGATAAGACCCTATCAGGGACTTTGGAGAATATATGT
GAACACCAAACCACAACAACTGTTTTCAACGCCAAACCATCGAGAAATAA
CGAGGCTGCTAACATTCACGAATCCAAAGTGTGTGGCATCATTGAAACTG
ATGAAAACCATACTGATTCTAATGCCAATATTCTCAAATCTGAAGCTCCT
TTTGAATCAGAAGTTGCTGTAACCAACATACTATCATCCTCCGAAACCAA
TCATGAGCCACAATCTATGTCAAAAACCGATGCTTCCAGCAAATCCGAAC
CACGCCAACATTCTCCCAATGTGGAAGTCGGAAAATCTAATAATTCATCA
GAAGTTTTTGTTTTGCTGGATAACATTGATACTTACTCATCTTATGTACT
CGTTACTAAAGAAGGTGACAAAATAACAACGTGTAAACTGGTTGACGAAA
ATACACAAACAGTTTCATTAAAACCAAATGAGCTGTCCGTCTCTCATACA
AACAATAAAATGGATAATTCACCATTGACATCGCATACAGAAACTAAAGA
AACATTGATCATTCATACTGTCACCAAAATACAAGAGAATGTATCATTCC
TTACTGACATTTCCACTGCTACTGAGCCTAAAGAAGATTTTAAGCTTGAT
CATTTCTCCACTGATGCAACCACCTCACAAACAGAGAGTAAAGAAACATC
CAATATTCATACTGCTACAGAGATAAAAGAGAATGTCTCATCCCTTACTG
ACATCACCACTGCTTCTGAGCATAAAGGAAATTCTAAACTTCAACCAAAG
ACTGAAGATCATCTCTCCACTGCTGCGACCACCTTGCAAACTAAAACATC
TAGCTTTCAAACAACCACTAAGATGCAGAATCTCTCGACCATTTCTGATA
TTATCACTATTTCAAAGTCAACAGAAATTGCTAACCGTCAATCCAGCACT
GAAAATGATCTTTCACCTAACATTGAAGCTAGCTGCGATATGCCAACATC
CACCAAACCTCACGCCCACGCTGCCGCTGAATCTGTAGATATGAGAAATG
ATAAAATCGAAATTGATAATACTCAGACTAATAGAATCAAATCACAATAC
ATTGAAACCGTTATCACCGAAGATGATAAGACCCTATCAGGGACTTTGGA
GAATATATGTGAACACCAAACCACAACAACTGTTTTCAACGCCAAACCAT
CGAGAAATAACGAGGCTGCTAACATTCACGAATCCAAAGTGTGTGGCATC
ATTGAAACTGATGAAAACCATACTGATTCTAATGCCAATATTCTCAAATC
TGAAGCTCCTTTTGAATCAGAAGTTGCTGTAACCAACATACTATCATCCT
CCGAAACCAATCATGAGCCACAATCTATGTCAAAAACCGATGCTTCCAGC
AAATCCGAACCACGCCAACATTCTCCCAATGTGGAAGTCGGAAAATCTAA
TAATTCATCAGAAGTTTTTGTTTTGCTGGATAACATTGATACTTACTCAT
CTTATGTACTCGTTACTAAAGAAGGTGACAAAATAACAACGTGTAAACTG
GTTGACGAAAATACACAAACAGTTTCATTAAAACCAAATGAGCTGTCCGT
CTCTCATACAAACAATAAAATGGATAATTCACCATTGACATCGCATACAG
AAACTAAAGAAACATTGATCATTCATACTGTCACCAAAATACAAGAGAAT
GTATCATTCCTTACTGACATTTCCACTGCTACTGAGCCTAAAGAAGATTT
TAAGCTTGATCATTTCTCCACTGATGCAACCACCTCACAAACAGAGAGTA
AAGAAACATCCAATATTCATACTGCTACAGAGATAAAAGAGAATGTCTCA
TCCCTTACTGACATCACCACTGCTTCTGAGCATAAAGGAAATTCTAAACT
TCAACCAAAGACTGAAGATCATCTCTCCACTGCTGCGACCACCTTGCAAA
CTAAAACATCTAGCTTTCAAACAACCACTAAGATGCAGAATCTCTCGACC
ATTTCTGATATTATCACTATTTCAAAGTCAACAGAAATTGCTAACCGTCA
ATCCAGCACTGAAAATGATCTTTCACCTAACATTGAAGCTAGCTGCGATA
TGCCAACATCCACCAAACCTCACGCCCACGCTGCCGCTGAATCTGTAGAT
ATGAGAAATGATAAAATCGAAATTGATAATACTCAGACTAATAGAATCAA
ATCACAATACATTGAAACCGTTATCACCGAAGATGATAAGACCCTATCAG
GGACTTTGGAGAATATATGTGAACACCAAACCACAACAACTGTTTTCAAC
GCCAAACCATCGAGAAATAACGAGGCTGCTAACATTCACGAATCCAAAGT
GTGTGGCATCATTGAAACTGATGAAAACCATACTGATTCTAATGCCAATA
TTCTCAAATCTGAAGCTCCTTTTGAATCAGAAGTTGCTGTAACCAACATA
CTATCATCCTCCGAAACCAATCATGAGCCACAATCTATGTCAAAAACCGA
TGCTTCCAGCAAATCCGAACCACGCCAACATTCTCCCAATGTGGAAGTCG
GAAAATCTAATAATTCATCAGAAGTTTTTGTTTTGCTGGATAACATTGAT
ACTTACTCATCTTATGTACTCGTTACTAAAGAAGGTGACAAAATAACAAC
GTGTAAACTGGTTGACGAAAATACACAAACAGTTTCATTAAAACCAAATG
AGCTGTCCGTCTCTCATACAAACAATAAAATGGATAATTCACCATTGACA
TCGCATACAGAAACTAAAGAAACATTGATCATTCATACTGTCACCAAAAT
ACAAGAGAATGTATCATTCCTTACTGACATTTCCACTGCTACTGAGCCTA
AAGAAGATTTTAAGCTTGATCATTTCTCCACTGATGCAACCACCTCACAA
ACAGAGAGTAAAGAAACATCCAATATTCATACTGCTACAGAGATAAAAGA
GAATGTCTCATCCCTTACTGACATCACCACTGCTTCTGAGCATAAAGGAA
ATTCTAAACTTCAACCAAAGACTGAAGATCATCTCTCCACTGCTGCGACC
ACCTTGCAAACTAAAACATCTAGCTTTCAAACAACCACTAAGATGCAGAA
TCTCTCGACCATTTCTGATATTATCACTATTTCAAAGTCAACAGAAATTG
CTAACCGTCAATCCAGCACTGAAAATGATCTTTCACCTAACATTGAAGCT
AGCTGCGATATGCCAACATCCACCAAACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060651-exon-scaffold_348-1491911889:434635..435343 | TCONS_00060651-exon-scaffold_348-1491911889:434635..435343 | Clytia hemisphaerica | exon |
| TCONS_00060651-exon-scaffold_348-1510915933:434635..435343 | TCONS_00060651-exon-scaffold_348-1510915933:434635..435343 | Clytia hemisphaerica | exon |
| TCONS_00060651-exon-scaffold_348-1575043694:434635..435343 | TCONS_00060651-exon-scaffold_348-1575043694:434635..435343 | Clytia hemisphaerica | exon |
| TCONS_00060651-exon-scaffold_348-1491911889:435488..435659 | TCONS_00060651-exon-scaffold_348-1491911889:435488..435659 | Clytia hemisphaerica | exon |
| TCONS_00060651-exon-scaffold_348-1510915933:435488..435659 | TCONS_00060651-exon-scaffold_348-1510915933:435488..435659 | Clytia hemisphaerica | exon |
| TCONS_00060651-exon-scaffold_348-1575043694:435488..435659 | TCONS_00060651-exon-scaffold_348-1575043694:435488..435659 | Clytia hemisphaerica | exon |
| TCONS_00060651-exon-scaffold_348-1491911889:435819..436049 | TCONS_00060651-exon-scaffold_348-1491911889:435819..436049 | Clytia hemisphaerica | exon |
| TCONS_00060651-exon-scaffold_348-1510915933:435819..436049 | TCONS_00060651-exon-scaffold_348-1510915933:435819..436049 | Clytia hemisphaerica | exon |
| TCONS_00060651-exon-scaffold_348-1575043694:435819..436049 | TCONS_00060651-exon-scaffold_348-1575043694:435819..436049 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_348 | supercontig | scaffold_348:434635..436049 + |
Blast
The following BLAST results are available for this feature:
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