TCONS_00060648 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00060648
Unique Name	TCONS_00060648
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	412

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_348:410538..415193+

transcript sequence

>TCONS_00060648 ID=TCONS_00060648|Name=TCONS_00060648|organism=Clytia hemisphaerica|type=transcript|length=412bp
GTTCACTCATCCATTGGATCTGCTCAAGGTTCACCTACAGCAAGCAAAAA
CAACCAATAGAGGATTAATCTCAACTGCTTTGAAAGTCATCAAGAATGAT
GGTTTCTTAGGGTTGTATGGTGGTATCAGTGCTTCCATATTACGACAGCT
CACTTACAACACAACACGTTTTGCCTTATATGAAAGACTCAGTGCAAAAC
TACTGGAAAATCGTAATGATGCCTTACCGTTTTATCAGAAGCTTGCTATT
GGTTGTGTAAGTGGGTTTGTCGCTGGTGTTGTTGGCAATCCTGCAGACAT
GGTTCTGACCAGAATGCAAAACGATGTCAGACTGCCCAAAGATATGCGAA
GAAAATACCCTTGTTATTGCACTCAACTATGCACAGCATGCTTATCAGGA
CCATCACATACA

Run BLAST on NCBI

transcript from alignment at scaffold_348:410538..415193+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00060648 ID=TCONS_00060648|Name=TCONS_00060648|organism=Clytia hemisphaerica|type=transcript|length=4656bp|location=Sequence derived from alignment at scaffold_348:410538..415193+ (Clytia hemisphaerica)
GTTCACTCATCCATTGGATCTGCTCAAGGTAGAATACAATACCATGTAAT
TATTTGTCTACTTTAAACAGATTCGAATCACATAATAAGTCACATTAGGC
TTTGATGTGTAAATTTTGGGTGTTTAACCTTTTAATAAACCAAAGTTGAA
ACAGGgatgttatttttttaatagataTAATAGATATTTCTCCCAATTCA
CTGTCTCTGTTCAGTCAGTAAACCAAAATTCACTTCCAACTATACCAAGT
GGCAATTAAGTCCTCGAGTTCcacatggacccgtagctcaatggtagagc
aaatgcccacaaatggcatggttgtgagttcaaGTCTTGCTGGATCCGTT
AGTTTTCGAATGGCTCtcggtggctggtcagaagacaacatgagagctac
tgtattcacttcattacTATATGATTATTTTAGGTTCACCTACAGCAAGC
AAAAACAACCAATAGAGGATTAATCTCAACTGCTTTGAAAGTCATCAAGA
ATGATGGTTTCTTAGGGTTGTATGGTGGTATCAGTGCTTCCATATTACGA
CAGGTTTCATCATTACATCTTCTTTCCTTCAGTGTACAAGGTCTATGTAA
TCATGCAATTTAAAGTCTCAGGGGCACTTGAAACGATTAAATTTGACTTT
TGATATTCTATGATATTCTTATAGTATTCAGACATTTTAGAAGATAGACA
TTTTGATAATATCAAAGCTCATACTTCAGGTGTAGAACAATAAACTCAAT
ATAAATTCACTCCCGATCTGTATAATATCACtgtctcactaacattctgc
tGACTTGTTATTGTGAAGGTTccgatcacagacttgcaccgtGTTCAAAT
CCCAAGTACTTTCCTAACAGGGTATTAGGGAAGATAGACTCTTAACCTAC
ACTCATCCCattcaaacatttttgtaattGTTTGTCTTCTTCTTTGCTTA
GCTCACTTACAACACAACACGTTTTGCCTTATATGAAAGACTCAGTGCAA
AACTACTGGAAAATCGTAATGGTAAGTTTTTATGAAGTATCTTTAGTAAT
GAGTTAAGTCAGACTTGACTGAGTACAAAGCTCAAGGGTCAAGAACGGTT
TAGAAAGTGAGGATCTTTATTTGGAAGTGATAATTTTAGGGATGTCATTT
TGGATAAGCAATTTTTTATATATCTTATTTTGTCAGGATtatataatttg
ctgtatcttGACTTCTTTGGAAGAAATCAATGTCCAAATCAATGTCCATT
TTTCATATTGAAGACATTTTTAATGTGGTATTTTGTTGGTAGTAATTCAA
AACACCTCTCTATTCCCTCCTCCCCTTCATCGACCCAAAGACCACACCTT
CTGCACTATGTAATAATCTATATACCACTTAAAAAATTTTACGTAAAGAA
TTGTAAGATCTATATCCAATATGTTGTTATCACGAGATTTACTTTAAATT
GCataatatttcttaaaattgtTCCTTTAGATGCCTTACCGTTTTATCAG
AAGCTTGCTATTGGTTGTGTAAGTGGTGAGTTTTATATATATTTCTTTTC
cgattcgaaaaaaaaaaattctaaattggAGAGagacattttttttacaa
aataatacaAATTAAAGCAAACCCTCTttcaattaaagtttttcatgttt
CTAGGCCAGTTGTATAGAGATAATCGTTCAAAGCTATATAAGACTGTGGA
TATATGTAGCTCTTTGTTTATGATTATTGACAAGTTGACAAAGATGGTGT
CTCCAATCATTGCAAAGTAGAGAGTCGGTGTCTCCTTTAACAGTATCAAA
ACAATacaatctttttttataagcataacctttatacacgttttttttat
aagaacatctaaaatttttgaagcctttggatgttcttaactttttgagt
tttaagcctaaaaatgtccttaaacatgttcttatttttctcattttatg
aatatttttgtccattttatcaagaatttcggtgtttttgagtcctcaaa
gccttaacttgttctttacaTTAAGCTTAGGTCGAAAAATTCatcattca
aattttgttttaaaaatgggATCAATTATTAAAGAATTAAACAGTTTTTA
AACTGTACACCTTCTTACAAGGTGGATGAAAtcattaaactttttaaatg
atGGTCCATTTTCTGGTTTTTAGGGTTTGTCGCTGGTGTTGTTGGCAATC
CTGCAGACATGGTTCTGACCAGGTAAATTATGAAATCATAAACCATCGTT
AAATTATACGTCAATTACTTTTGTGGTCCAtttattgaaaaatcaaagaa
attcaattaaaaaactCGAGTAAAATTTCGCATTATAATGCAATAACTtc
ctaatttttaaaaatcttccaaACTGTTTAGGTTTTGTTAGCTGGCAAAA
TCAACATCCTTTAAAAATACTGCTAGTATTTTAGCAAGTAGTGATCGGTT
TGAATTCAAGAATTTAGAATTGAATACTGAGCCATTTCTACCCTTTTGGT
TTTTGACATGACATGTTTTAAGTCCACCCTAGGAAAATAAGGTACCTTCT
GAATTTTAGGCACCCCAAATAAACAGCAACTAGTAGGGGTtattataata
catttttttgctcagaatttacatgctctttcagatggtatcaataattt
tcgtttattttgactttaaaaaatcagccattttcctACCCCTTATTTcc
ccttgcaattttgcctatAGCGTCACTATTTtagtcataaaaagttttcc
cgggcctaatccgcgtcctccctctcaaaaatatcttttagtatactgtt
ctttggaatagactaaaaatggttgGGTCGTAgaaagatgtcacgggacc
cCAGGCTTGGTCCTCTactaaacacaaaaaaaatctttaaacagcGCATG
TAAAAAGATCTTCCCATGTCAAGTGATTTTAAGTACTATTAGATTTTGCG
TCTATAAATCGGGTGACTCAAAGTCATGAAAGAAATATCGTTCAGCTTGT
GCAATGACTTCAATAAGTTATTCAAAATCGCCTTTTCGAGGACTCCACTT
TCTTCGCCAAGACTGTATGATGAAATTGAACGCTTTATGCGacataaccc
agctggcacacaacgttgtttcagcgTTGacctaacgttaaatggacctt
gtgaacgttagataaacgttgaaacaacgttgtttgccaGCTGGCAAAGT
ATAGATCTACAATGATACATGATTAAGAAATggtgtatttcttctcaata
ctttaagtttcttccttacgcattcatcagttgattagaaatcTACAATG
ATCTACAATGATCTACAAGGATCTACAATGATCTATAAGGATCTACAATG
ATCTACAAGGATCTATAATGATCTACAATGATACATACAATGATCTACAA
GGATCTACAATGATTTACAAGGATATATACAATGATCTACAAGGATATAC
AATGATCTATAAGGACCTACAATGATCTACAATGATCTACAATGATCTAC
AAGGATATACAATGATCTATAAGGATCTACAATGATCTACAAGGATCTAT
AATGATCTACAATGATACAAACAATGATCTACAAGGATCTACAATGATCT
ACAAGGATCTACAAGGATCTACAAGGATCTACAAGGATCTACAAGGATCT
ACAATGATCTACAATGATACATGTCAAGGTTTATGAAGACTTTGATTCTT
CCATTTAGAATGCAAAACGATGTCAGACTGCCCAAAGATATGCGAAGAAA
GTAAGTTACCAATATTCACCCCTCAAAGTTTACAGGGTATCTGGGGTTCA
GAGTAGAGCACTGAAGATAATATTCTATTCAGGATATGCACCCCTGTGAC
ATTTGCTGACATAACGTAACTTTTACAATAGCTGGTTGCTTGATTAAAAa
cataatgggctcttccagaaaatgttcgtacgttcgtgccttgtccgggg
gggggggtaaacttgctatGTTTGGGATTAATTTTGCTCtatttgagggt
aattttgagtgtcctgggggtcaactaatgcttgtccgggggttagacct
gctgtccgagGGGTCAAAAGTCACGATATCCGGGGGTAgatttatttcta
aaaaatgttatatcctccacccccccatattcaaaattttctggaaaagc
ccaatttcatgaagtcattgcagtggtacATATCATGGATAAACTTGTCT
ATCCTTGTCGGCGCGGTCGGACTTGTGACGAAAATACAAGGGAAATTATC
CTTGACGAATGTATCAAAAACACAAGTGTTGGAGTGCTCTTGTGAAACAT
ATACATAAGATGCCCTTTCATTGAAGTGATAAAGTAATGTCAATAAAGTT
AAGATTAATTCGAATGCTAAAAATAGTTTGCACTCGACTGTAGAGACTGC
AGAGACTCTCTAAAATGTTTCTAGAGTTTTTGCGGGAATATCCTTAGAAT
TGAAAAAATGCCGTGCGCCGAGAATAAATcttccttgtaaattcattacc
agtcTCCTAAAAAGCCGACCGCGCTTCTAAGGGTTGGTGGGTGTATTTGA
TTCTGCATAACAATATTTCTTCTGACTTAGGCTTCAATTATTTCTCAGAT
ACCCTTGTTATTGCACTCAACTATGCACAGCATGCTTATCAGGACCATCA
CATACA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_038139	XLOC_038139	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_348	supercontig	scaffold_348:410538..415193 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.37146	1.30781	0.930255	0.392189	0.706561	2.88449	1.59061	5.3363	1.4262	0	0	1.41725	1.81817	4.32836	0.702118	0	3.50061	4.90237	0	0	0	0	2.8436	0	1.59694	0.361574	0.975293	0	1.14148	1.37222

Blast

[Close]

BLAST of TCONS_00060648 vs. Swiss-Prot (Human)
Match: DIC (Mitochondrial dicarboxylate carrier OS=Homo sapiens GN=SLC25A10 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 1.843e-37
Identity = 60/118 (50.85%), Postives = 81/118 (68.64%), Query Frame = 2

Query:    5 THPLDLLKVHLQQAKTTNRGLISTALKVIKNDGFLGLYGGISASILRQLTYNTTRFALYERLSAKLLENRNDALPFYQKLAIGCVSGFVAGVVGNPADMVLTRMQNDVRLPKDMRRKY 358
            THPLDLLKVHLQ  +     +   AL+V++ DG L LY G+SAS+ RQ+TY+ TRFA+YE +  ++ +     LPF++K+ +G VSG   G VG PAD+V  RMQNDV+LP+  RR Y
Sbjct:   24 THPLDLLKVHLQTQQEVKLRMTGMALRVVRTDGILALYSGLSASLCRQMTYSLTRFAIYETVRDRVAKGSQGPLPFHEKVLLGSVSGLAGGFVGTPADLVNVRMQNDVKLPQGQRRNY 141

The following BLAST results are available for this feature:

BLAST of TCONS_00060648 vs. Swiss-Prot (Human)

BLAST of TCONS_00060648 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DIC	1.843e-37	50.85	Mitochondrial dicarboxylate carrier OS=Homo sapien...	[more]

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TCONS_00060648 (transcript) - C. hemisphaerica