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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060640 ID=TCONS_00060640|Name=TCONS_00060640|organism=Clytia hemisphaerica|type=transcript|length=2035bp
TGGAGACTAGCAACTATcatgtatttttgttttgtaagataatgggcttt
tccagaaatagtccgtgccccccctgttgaggatattgggTATCCAGTgt
gttaacgatttttgttcaaaagtggacatccagggggttaaatatctaca
agggaccagatatccagggggtaaagtgtcttttcaagtaaaaaatacga
tattcaggggtaagcatcttatAAGAgaagatatccagggggttgagcat
atattttaagagtggatatccagggggtctgggggtctttactaataaag
tgggggttcgatacttcgaaaaatcaatatcctcaacagtggggttAAAA
ATCCTTTCTGTAAAAGCCCAATGgagagaaattaaaaatttgattcTAGT
CATTAGgactgattttacttttttctgattccccCTCTTAGTCAACACAA
CATCAGTCACAAGAAGCAGATTTCAATGGTCTCAACTTCAGCATGAATTC
ATCTGAATCATCAGCATCCGTGCAAGATCATAATAACTTCGATCCTTTTT
CACAACAAACTTCAATCATACCAATACTTTCAAAACCACCAGAGAGTAAT
CCACCAATGTTGTCTAAACCACCATCCAGCACCCAATCATCACAGTCCAA
ACCTTTGCAATCTAATCAAAACAACACACCTGTTAATACGGACACAGACC
TTTTTGCCGGCTTAAACCAGATGTCTCTTAAAGACAACACAACTAATATC
CTATCAAAGGACCTGTCCTATGAGGACCCTTGGCGTTTCGGCAATGATGA
ATCTAGAAACGAAGAAGGTGATTTACACAGTACTCCATGGGATAATGGAA
AACCTCTTAGCTTAAGTGAATCCCAAAATACAGCAAATCCAATAGACTTT
GTAGATAAAGCACCAGACTTTTCTATAAATACCAATTCAACATCAATTAC
CACTGCTCCAATCCAGACTTCATCTCTAGCAGCCCTACAAAGTGGGCAAG
ACCTATTTGGATCTCTTTCATCAACAAACAATCAAAACACTTTAATACCA
GCATCCAAGAGTGACGACTTCGACCCATTCAACAATTCTTTAGCTGCAAC
GCCTGTTAGAAATTCAAATAATCTTAAATCTTCAAATTCTCTACTTACCA
ACCAACATCAAACTAGCTCTAATATCTTGCTACCTTCAAATACAACAAAC
TCAACAAATTCTTTTATGGCAGACTTTGGAAACCTCCAATCCCACCAAAA
GCCAAATGAAACACTTGGGGGCTTTAACCTCAGTAATAGTAACCtactaa
ataattcaaatttcgcAGCAACGCAAAAACCTTCTACACACCAACTCATA
CCATCTGCATCATCATCACATACACTAAACGCACAACAACCCATGACTCC
AAATACAACCAATCAACTCCAAACATCATCGATGAATACACAACAATTCA
TGCCACAGCCCATGAACCCAACGAACAGGACGAACTTCCAAACGCAACCC
AACACACAAATGTTGGCCGACAGCTTCCAGCAACAGGGACAGCAATCGTT
TAACATATCTTCACAAAAACCTACAAACCTACAAATGAACAAATTCCCTC
AACAACAAGGAACGAGGAACTTCAACCAACAACAACGAAATATGAATAAT
CTTCAGCAACAAGGAGCCAAcataaactttcaaaatcaaatgaatTTAAA
CTACCCCCAACAAGGTGGAAACATAaattttcaacaacaaggagGGGCTA
TGAATTTTCAGATGTCCGGAAATCAATATCGataccaacaacaacaacaa
caacaacaacaacaatcaaATTTCGGACAACCATCCAATCTCAACTTTAT
GAACCAGGGAACGTCTTCAAGACAAAGTCAAAGCTCGGACGCTTTTAGTT
TCGTTCAGGATGCTATGAAAgctaataaaaaataatcagagATTGATTTC
TTGTTCTTCTTGGTATTTGTATTCATGATAGTCGTTAATGCAATGGTTTC
GAAATTTATGGAGCATAAGGTTTTGACCAGTTGAT Run BLAST on NCBI transcript from alignment at scaffold_348:329421..331516+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060640 ID=TCONS_00060640|Name=TCONS_00060640|organism=Clytia hemisphaerica|type=transcript|length=2096bp|location=Sequence derived from alignment at scaffold_348:329421..331516+ (Clytia hemisphaerica)
TGGAGACTAGCAACTATcatgtatttttgttttgtaagataatgggcttt
tccagaaatagtccgtgccccccctgttgaggatattgggTATCCAGTgt
gttaacgatttttgttcaaaagtggacatccagggggttaaatatctaca
agggaccagatatccagggggtaaagtgtcttttcaagtaaaaaatacga
tattcaggggtaagcatcttatAAGAgaagatatccagggggttgagcat
atattttaagagtggatatccagggggtctgggggtctttactaataaag
tgggggttcgatacttcgaaaaatcaatatcctcaacagtggggttAAAA
ATCCTTTCTGTAAAAGCCCAATGgagagaaattaaaaatttgattcTAGT
CATTAGgactgattttacttttttctgattccccCTCTTAGTCAACACAA
CATCAGNCTAATATTGATTTAACTTTTTTCCGATTCCCCCTCTTAGTCTA
CATCAACACAACATCAGTCACAAGAAGCAGATTTCAATGGTCTCAACTTC
AGCATGAATTCATCTGAATCATCAGCATCCGTGCAAGATCATAATAACTT
CGATCCTTTTTCACAACAAACTTCAATCATACCAATACTTTCAAAACCAC
CAGAGAGTAATCCACCAATGTTGTCTAAACCACCATCCAGCACCCAATCA
TCACAGTCCAAACCTTTGCAATCTAATCAAAACAACACACCTGTTAATAC
GGACACAGACCTTTTTGCCGGCTTAAACCAGATGTCTCTTAAAGACAACA
CAACTAATATCCTATCAAAGGACCTGTCCTATGAGGACCCTTGGCGTTTC
GGCAATGATGAATCTAGAAACGAAGAAGGTGATTTACACAGTACTCCATG
GGATAATGGAAAACCTCTTAGCTTAAGTGAATCCCAAAATACAGCAAATC
CAATAGACTTTGTAGATAAAGCACCAGACTTTTCTATAAATACCAATTCA
ACATCAATTACCACTGCTCCAATCCAGACTTCATCTCTAGCAGCCCTACA
AAGTGGGCAAGACCTATTTGGATCTCTTTCATCAACAAACAATCAAAACA
CTTTAATACCAGCATCCAAGAGTGACGACTTCGACCCATTCAACAATTCT
TTAGCTGCAACGCCTGTTAGAAATTCAAATAATCTTAAATCTTCAAATTC
TCTACTTACCAACCAACATCAAACTAGCTCTAATATCTTGCTACCTTCAA
ATACAACAAACTCAACAAATTCTTTTATGGCAGACTTTGGAAACCTCCAA
TCCCACCAAAAGCCAAATGAAACACTTGGGGGCTTTAACCTCAGTAATAG
TAACCtactaaataattcaaatttcgcAGCAACGCAAAAACCTTCTACAC
ACCAACTCATACCATCTGCATCATCATCACATACACTAAACGCACAACAA
CCCATGACTCCAAATACAACCAATCAACTCCAAACATCATCGATGAATAC
ACAACAATTCATGCCACAGCCCATGAACCCAACGAACAGGACGAACTTCC
AAACGCAACCCAACACACAAATGTTGGCCGACAGCTTCCAGCAACAGGGA
CAGCAATCGTTTAACATATCTTCACAAAAACCTACAAACCTACAAATGAA
CAAATTCCCTCAACAACAAGGAACGAGGAACTTCAACCAACAACAACGAA
ATATGAATAATCTTCAGCAACAAGGAGCCAAcataaactttcaaaatcaa
atgaatTTAAACTACCCCCAACAAGGTGGAAACATAaattttcaacaaca
aggagGGGCTATGAATTTTCAGATGTCCGGAAATCAATATCGataccaac
aacaacaacaacaacaacaacaacaatcaaATTTCGGACAACCATCCAAT
CTCAACTTTATGAACCAGGGAACGTCTTCAAGACAAAGTCAAAGCTCGGA
CGCTTTTAGTTTCGTTCAGGATGCTATGAAAgctaataaaaaataatcag
agATTGATTTCTTGTTCTTCTTGGTATTTGTATTCATGATAGTCGTTAAT
GCAATGGTTTCGAAATTTATGGAGCATAAGGTTTTGACCAGTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060640-exon-scaffold_348-1491911889:329421..329871 | TCONS_00060640-exon-scaffold_348-1491911889:329421..329871 | Clytia hemisphaerica | exon |
| TCONS_00060640-exon-scaffold_348-1510915933:329421..329871 | TCONS_00060640-exon-scaffold_348-1510915933:329421..329871 | Clytia hemisphaerica | exon |
| TCONS_00060640-exon-scaffold_348-1575043694:329421..329871 | TCONS_00060640-exon-scaffold_348-1575043694:329421..329871 | Clytia hemisphaerica | exon |
| TCONS_00060640-exon-scaffold_348-1491911889:329933..331516 | TCONS_00060640-exon-scaffold_348-1491911889:329933..331516 | Clytia hemisphaerica | exon |
| TCONS_00060640-exon-scaffold_348-1510915933:329933..331516 | TCONS_00060640-exon-scaffold_348-1510915933:329933..331516 | Clytia hemisphaerica | exon |
| TCONS_00060640-exon-scaffold_348-1575043694:329933..331516 | TCONS_00060640-exon-scaffold_348-1575043694:329933..331516 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_348 | supercontig | scaffold_348:329421..331516 + |
Blast
The following BLAST results are available for this feature:
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