|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060634 ID=TCONS_00060634|Name=TCONS_00060634|organism=Clytia hemisphaerica|type=transcript|length=2261bpRun BLAST on NCBI transcript from alignment at scaffold_348:149886..169769+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060634 ID=TCONS_00060634|Name=TCONS_00060634|organism=Clytia hemisphaerica|type=transcript|length=19884bp|location=Sequence derived from alignment at scaffold_348:149886..169769+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00060634 vs. Swiss-Prot (Human)
Match: ADAP1 (Arf-GAP with dual PH domain-containing protein 1 OS=Homo sapiens GN=ADAP1 PE=1 SV=2) HSP 1 Score: 186.037 bits (471), Expect = 8.419e-52 Identity = 120/368 (32.61%), Postives = 192/368 (52.17%), Query Frame = 3
Query: 117 ELMRIPGNSQCADCGTEEPEPNFVSLNLGLFICIKCSGHHRALGTRFSVTKSILLDTFDDAKVKQMEAGGNMLGVEKWQVNVPKCWPIVDKHSPDD---LIEQWIRAKYERQEFTENQVTEELRPYCVGSKYGFLMXXXXXDSKWQRRFFVLSAEEGYLKMYIKQGDNEPKHKISISGINLMMVHSDVTGEKHSMLITFPIMQNNQSKQRHIYVYADKSFEIVDWYLTIRGARLKFLTPYLYEVERPVVDFLQSRKFIKSGYLHKTGGKDGDSWRKRYVCVDFHRFLYFEKALDSEPIGEVSIEKAGMECFVMEGIDGNHPQSPSEHCFMVRAHENSSLKGRKPTYNFCAASREDLNIWMNAFRKGME 1211
EL++ PGN++CADCG P+P++ S LG+FIC+ CSG HR + + S KS+ LD +++A+V+ M + GN +++ VP + + +P D L EQWIRAKYERQEF E+ PY G + GFL K+ + + ++ R FVL+ EG LK + + EPK + I +N + + G H + +T+ +++N + R+I++Y + EIVDW+ +R AR +L + SR ++K GY+ KTG K + +RKR+ +D R +YF+ LD+ GEV I V+ G + H + + L F + D W+ AF+K ++
Sbjct: 11 ELLQRPGNARCADCGA--PDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMASHGNDAARARFESKVPSFY---YRPTPSDCQLLREQWIRAKYERQEFI---YPEKQEPYSAGYREGFLWKRGRDNGQFLSRKFVLTEREGALKYFNRNDAKEPKAVMKIEHLNATFQPAKI-GHPHGLQVTY--LKDNST--RNIFIYHEDGKEIVDWFNALRAARFHYLQVAFPGAGDADLVPKLSRNYLKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAFARGEVFIGSKESGYTVLHGFPPSTQGHHWPHGITIVTPDRKFL--------FACETESDQREWVAAFQKAVD 356 The following BLAST results are available for this feature:
BLAST of TCONS_00060634 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.