Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060629 ID=TCONS_00060629|Name=TCONS_00060629|organism=Clytia hemisphaerica|type=transcript|length=1233bpRun BLAST on NCBI transcript from alignment at scaffold_348:147553..166890+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060629 ID=TCONS_00060629|Name=TCONS_00060629|organism=Clytia hemisphaerica|type=transcript|length=19338bp|location=Sequence derived from alignment at scaffold_348:147553..166890+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00060629 vs. Swiss-Prot (Human)
Match: ADAP2 (Arf-GAP with dual PH domain-containing protein 2 OS=Homo sapiens GN=ADAP2 PE=1 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 1.726e-45 Identity = 106/275 (38.55%), Postives = 154/275 (56.00%), Query Frame = 1 Query: 412 EQCAHRLQELMRIP--GNSQCADCGTEEPEPNFVSLNLGLFICIKCSGHHRALGTRFSVTKSILLDTFDDAKVKQMEAGGNMLGVEKWQVNVPKCWPIVDKHSPDDLIEQWIRAKYERQEFTENQVTEELRPYCVGSKYGFLMXXXXXDSKWQRRFFVLSAEEGYLKMYIKQGDNEPKHKISISGINLMMVHSDVTGEKHSMLITFPIMQNNQSKQRHIYVYADKSFEIVDWYLTIRGARLKFLTPYLYEV-ERPVVDFLQSRKFIKSGYLHKTG 1227 E+ RL EL+R P GN+ CADCG +P ++ S LG+FIC+ C G HR S KS+ LD +DD+ V+ M GN+ K++ VP + I + L EQWIRAKYER+EF + T L G++ GFL K+ + +S++ RR FVL A EG LK + K+ PK ISI +N ++ G H + IT+ R+++VY + EIVDW+ +R ARL++L E+ E +V FL +R ++K G++ KTG Sbjct: 5 ERNKKRLLELLRAPDTGNAHCADCGAADP--DWASYKLGIFICLNCCGVHRNFPD-ISRVKSVRLDFWDDSIVEFMIHNGNLRVKAKFEARVPAFYYIPQANDCLVLKEQWIRAKYERREFMADGETISL----PGNREGFLWKRGRDNSQFLRRKFVLLAREGLLKYFTKEQGKSPKAVISIKDLN-ATFQTEKIGHPHGLQITY----RRDGHTRNLFVYHESGKEIVDWFNALRAARLQYLKMAFPELPESELVPFL-TRNYLKQGFMEKTG 266 The following BLAST results are available for this feature:
BLAST of TCONS_00060629 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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