TCONS_00060628 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060628
Unique NameTCONS_00060628
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1818

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060628 ID=TCONS_00060628|Name=TCONS_00060628|organism=Clytia hemisphaerica|type=transcript|length=1818bp
actggattttcaagagaagggcAAGTTCTTGACTCTTGACAGCTTGACTC
TCCACCCACCCACTAAccaacctgatccattttgaaatactgtatatact
tgagtcaaactgcactgagTGATTTTTAGCCAAGATTGTTTTAGAAATGG
ACATCACAGAATATTTGGAGGAAAATGTAGAAACTCGTATTTTTCAATCA
CCTATCCCAGAAAGTTGTAAAAACAGTCCTTGCTGTCTAGGGATAGATGA
AGCTGGAAGAGGACCTGTTTTAGGTCCGATGGTTTATGGCATTTGTTACT
GTCCAATATCTTTTATGGAAGAATTGAAAGAACTAGGATTCGCGGACtcc
aaaacattgaaaaaagaagacagaGATAAACTTTTATCAGTAATTGAGCA
AAACATTGAAAACATTGGATGGGCTATCAAAATTATATCACCAACCTCAC
TATCAAATGATATGCTGAGAAGCACAAAAATCAGTTTGAATGAGATTTCA
CACAATGCAGCAATTGAATTGACCAAAGTTACAATTAAAGACGGAGCTGA
CATCAAGGAGATGTATGTTGACACAGTTGGCCCAGCTCAAAAATATCAGG
AcaaattatcagaaattttcaaatcaataaatGTTACTGTGACACCAAAA
GCTGATTCCAAATTCCCAATTGTCAGTGCTGCTAGTATTTGTGCTAAGgt
tgCACGTGATCAATGTTTAGAAGGGTGGAAATTTGGTGAAGGGGAATTCC
CTACTGAATATGGGTGTGGTTATACATCAGATTCACTGACACAAAAATGG
TTGAAAGACGTCATCGATCCTGTATTTGGACATCCACAATTTGTGAGGTT
TGGCTGGTCAACCTGTAGCGAGATGTTAAAAAAACATGCCCGAGACGTTA
CGTGGGAGGATGATGACGATGAGGGAAAacctaaaaagaagaaaagttcc
TTTGCCATCACGTCATTCTACACTCAAgagaaaaacaaccaaaaagtTGA
CCACTGTCGATTCTTCAAAGAACGAAACCTTCAACAAGTCTCCTCTTTAT
GAtaagaaattttcaactttgCAGTCAATCATTTGAGTGAACTGTTCGAT
TATTTAACTGTATCGTACAGTTTTTACGCACACACTCAAGGTGAACAATA
AGGAAATGTATTTCTTTTCGGACCATGAACCTTTACAATCATCACTGTGT
ACATGATATTAAAAGAAAGGAgtaataaatgaataaatgatTTACAAAAT
AATTTGACATTGTATTGGACATTTTGTTTCTCAACTTACTACTGCACATG
ggatcatagtcattataaaaaactcgctctggcaatgtattgttttagct
ttttgtttaattttcttttgttacaaacaaaaggcaagttgcgatttgaa
tactttttgatcacattaccaaaatctcctcttgggattggtctattttc
taatcacatgatcaaaaagctTGCAAAATAAATCTATTTTGGTACATAAG
CTCTatctttttacaataaaaagagaaaaaagccTTCcactgtttttata
atgactatgatggGATGATGCCAATAAAGAAAATACTGTTTTTATGGATA
TTAGTAAAATTAATTAACATAAACCTGACTTACCATATTGGTTGCAATCC
AAATGCACCATTACAAATATCTGTGATATGGGTTTATTTCaagattgttt
tgtttatttataacgctgaaatatataaaaattgaaagatttttatgcTA
TTATTTGTTGagcattattttttttcatttctttatgtTAAAATAAATAC
TTCAATGAATCAATCAAA
Run BLAST on NCBI

transcript from alignment at scaffold_348:89028..101394+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060628 ID=TCONS_00060628|Name=TCONS_00060628|organism=Clytia hemisphaerica|type=transcript|length=12367bp|location=Sequence derived from alignment at scaffold_348:89028..101394+ (Clytia hemisphaerica)
actggattttcaagagaagggcAAGTTCTTGACTCTTGACAGCTTGACTC
TCCACCCACCCACTAAccaacctgatccattttgaaatactgtatatact
tgagtcaaactgcactgaggtgacactaagaaaatttttgtttcttaaaa
ttataaagagaattttttttgaaatatcaataaaagagctcataatacca
gaaaaagtttggtcaaaatgctgacaaaataacacaaacttcaacgcacc
gtataggattcgaactctcaAAATTGACATTCTTATTCTTGCCAGTTCAC
CGCTTTATCCACTCGGCCACTAGAGATGATGATTTGAAGAAAACAATAAT
TAATAATACCATAATTTTATTTGCCTTGACCTGcataattttatttaccc
tgtcaaggtattaacttcttaaacaaatgattttagatcaTTTAAAACAT
GGGGGAGCCGATCACTCATCGAGATTTTTAGGGCTCTTTAGTTGAAGAGT
GACTTTTCTTGACTTATTCAATTCTGTAAGGGGACTGCAGCAAAAGGGCT
GTAAACCCTACTAGTGCCTATGAAATAAGAATTTCCATCTGGGGGGTTAG
GACACTCTCCAATCTCCTTAAAGTCTCAAAAGACTGAAAAGAGAAGCTTT
TTCTTGCATACAGTACCCATATACAGCAGACAGAATTCACAGAGCGTACA
CGCGCGGGCGTTTAAACAAGATCGCGCGGAATGCGGGtcaaaaaaattcc
cgtgagcaatctcgttatttatcaaaaagtctcACATCTCtaatctacca
tttttgttttgattcaactttgtattttaatgaccagccaggtcacactc
atttgagggctatgcatgttaacctccactgatgcaagttactcgataaa
aaaaaaaaaattcctacaGTGTAATCTTTTCAaacttcagatttttttca
aaatttctttcaatgtTTCATCTGAGAATATATTTGAAGATCTAAGGAGT
TTCTGGTATGAGAAATGAATTATTGTGAATGCGCTGCTAAAatgaaatga
taaaagaaaatgtgtttttatattttgattttttgatccACAATCTTTGG
CTATTTATGTTTGATTTATTGAAGATTTAAAATTTCCATTCTACCATCTN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTGTGACTA
TAAtacttcatactctttcttgttgataattttgctggtaggtgggaaag
cgagtttccttcgaaacggattttctgttaaaaaaaagggggggaagatt
tcattacaaaagggggggatgggtatatagggggggatgaaaaaTTCCCG
TGAgtaatctcgttatttatcaaaaagtcactggaaatgcttgtcgccat
tttgatttgcatagttgtattttacagaacatagtatagtgtagaaaaac
acgaaaatatctcctccgtatattacttttctaactcgaaaacgtaaatt
ttatagcaagatctttattctgggttttctcagagatcttctcgaacaat
tgctaataaatttcaacgggttttccctcttacaaagcatCAACCATGTG
AAtactttttgttagataagccaatatccagccaatataaatattaaaga
gcttcatgcgaaagctagatcaaagaaaatcgacttcgaatctttttaca
ttcgaatgtttatgtgtttaccttttttgagAAGGAAGAAAGGgaaacct
aggcttttaggccttactcttggtctataggcactgttATGGGCgaccac
tagtgacccccactgGGAATTCGCTTTTGATTAAACATAATagaaattat
aaacaaaaagattttatcaatagagatttcaaataaaagaatgtttataa
agcacagctgattggcttaggtttcgaaactctctattgcttcattaaaa
cctcagtccgcatgcgatttatccagagaatttcaatattcaaaacaaga
gcagtgctcatatcccgaagagtaggagttttacgctcggaggaagatat
gacgtagcctaagggaaacctttctgatctgttgcatcttcttattattt
atgctgacggaaaaccctttgttgttatgattcgaatgtatTCTCTTTCG
TTCGAATTCGAAACTtagtaaatatcatgtctggggaaatccctacTACT
GTAATGTCTActaagaaactcttctaaagaggttttcgcggttttagcct
ctacaaaggagagtttttggtttttggtgtttgtgtgATTGCTGTATTTG
Tgtttctgcttggctttttaaactttatgtctattggtttgttggttctt
tttcgcataaaattcttatttcttgacagaatgtttgattggtttgattt
atatatttaaaaaaattcaaaaaaatggaaaaaacgtatcattataaaaa
tattagtccctttttatgtttcatctttattttatttagtattttcaaca
cttgctctccttgaggtcaaatctctgatcttcaccatatatacaTACCA
ATCACTTTGCTCAAGCcaggaaaaaaataaaccaCCCTCcctttgtataa
gattcccatttccgcactaagattcttgtcacttttctgGAGTCTTTCCG
CTACTTTTCCGGGGATAACTGGACTGGCATGAaattggaaagggtttgtt
tctaaaggtacCGAAAATCTTGGGTTCCTTTGTATAAGATTCcaatttcc
gcactaagattcttgtcacttttctggagtctttccgctatttttctGGG
GATAACTGGACTGGCATGAaattggaaagggtttgtttctaaaggtaTCG
AAAATCTTGGGTTTACTTTAATCAAGAAACTGTCTAACTGGTTTCCGGAG
CTTACCTTAAGGGAAATTATTttggcaggaactaattttggcgggcagaa
aaaatcctaaaagaaattaattttggtgggaacttattttgtCGAATggc
gaaattttttaaattttgacaggaactaattttggcgaatgacagcgtaa
atgtgttctattttgccttattttgatgaatttcagggttcatttagtaa
aaaataaataaaaaattttggtgggaacttattttggcaagtgagcaaaa
tatttaattttggcgggaactaattttggcgaatttcgtctaaattcggC
AAATCggctaaaattagttcccgtcaaaattagttcccttaaggtatttt
atttttcaacaaactgaagtcctggtctttttgCGGAATGTGCGTTTGAG
CGCGCGCAGCGCGCTCAAACGCGCGttccgcatcctttggcaagatctgc
gtacgcgggacgtaaatttgtatatgttcaaaaaaatgtccccaaaactg
ctacctccaaaatgaaaaatatcaactttgctCTGAATTGAAGAATGGTA
CCTGTTTAGCTAGcgaaaagaagcatttacctcgtaaattttattgacaa
ttaaattTAGTAAAACTTTGCTTCTgattttgtcgttttttgtttttaat
atgcattcttttgaaaaaagtaaaagtggtactaaaattatatcgagttt
gactatccaatcaagtgcgagatgtctgtttttgtgtcgttgctgctact
ttcacttttgcacacttgcgaaaaataaacaaagatggcgatttttgtca
agCTGTCAAGGCAGAggatcctgctgattttttaagctggaaggcatctt
ttgcttgtaaaatgacgttgctgctgttcacacttattggaaattttaaa
cgagtatcattcttgaagtttttttaccacttcctctgggagaggtGAAA
GCTGTCCTATCCTCCACTTGCTGATGGTGGTGGCTGTAGTCAACTGCTGA
AATTTTCCATAAATNATTCTTGAGGTTTTTTaaccacttcctctgggaga
ggtGAGAGCTGTCCTATCCTCCACTTGCTGATGGTGGTGGCTGTCATGCG
TCAACtgctgaaattttgtgaaatggTGTGATGATGGTTGTTTACTTTGT
GGCATTCAAACTTCATGGCACATTTTTGTGAtaattgattggagtaacca
ttACTATTACATCAATTAATCTCATGGAAAACTATTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTATTGGAATTATGTCATGGTTAAACTTAACATT
CAGCGGGTATTGTTgccaaacaatgattttttttgtcacaTTGTCAGCCA
ATACTGTTCGACTATTCAAGTAACTTTTACGAAAAAGATCATACGCCATC
GAATATTGAGTGATTGTGGTCAGTAACATTCGTTGAGGCTGATTGAGGAG
GTACGCTGCTGTGAagaacagacaaaatatttgcaGGANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTTTTTGGCATTATTGTTATGACTCGCTAATATATTCTAGGTGAA
ATGTAAGGTcttattagtttgttctttaaaTTCTGCATATTAATAATGGA
GTCGATTTCttgtacattttgagatttcttcgctttgcgaaaacagaacg
ctcgttccgcaaccccttttatgttgatttcattttttgctTGTTACTTT
GAACCCATAAcagattacacacttttcctgtatcctgcCTTTCAACGCCA
GAGGCAGTCTTGTTGGAGCGTAgtaccgtgaagttgggtaacttgcacca
gtggagggaaacttgcatagccatcaaatgactgaccaatcaaagcagca
aaatttcaaaacaaatgaactatacgcagctctgctcgcagctctactct
accatttttgttttgaattaactttgtattttaatgtcCAGCCAAGTCAT
TCAtttaagggctatgcatgttagcctccgcTGATGCAAATTACCTGATC
TCACAGTATTCTGCCATGAGGTCGTGGGCATAATGGCAACAGAGTCGAGC
TACAGACTTTATTCTGGATAGACAAATATCTGGTACAATAAATCCTAACT
AAGTCCAGGAACTGTCAAAATGGCTATTGCGTGCCGcaataaagtttttg
caagtgAGGGAAGTTATGAGGATTATCATCGGACTAATCGATCTTTTTAA
TGAccaaaccaatcaaacttctattgcttcaaaaattgtgagtgttcaat
tagattcgattaatttttttactcaAACTTTAAGTGTTCGATGGAGTTCA
TTTAGTTCAATTGTTGGATTGGTTCCACAAGTTCAATTATTTTGGACTGA
GCTACTCTTCTTCataaacctaaaaatattttggttgacTCCCACAAATC
TctgaaaacgagggctgggttacaaGGCCTCCTGCTGCAAAACCCTTGAC
ATAGTCTTGCAAAATTCTGTAATcaaaaccttccagatgttgaaaatttt
ccagaccttttaaattttttttggtcgtaaaaatcggattttcttatttg
gggaaataatttccttatgtcatttttagcGGTTAGGGAAAAAGCATTTC
TCGCAATTggatttggtatttttttttcacttattttttttttgcatagt
gatATAGAATTGTAATATCTAATttctgatggagcccgatttatgaaaaa
ataattttttgggcaaatttgggccaaaaagtgcctaacatGGGTATTTT
TGGACTTCGGGAAAAATCACCTTTTATCATCAATTGGGAAATCacgctaa
aatatttattcacccCAGTATCATACGAATTTAAACTCTACTTCACAGGT
TGATATTAatttgagctgtgatactcacggtaatctattcaagctgctca
ctatacttttttactctcttgctatttgtcctatttttatctgattctca
tcatcatgtaggtccattcagcatgttgcttgttttaatAAAGACGCCCT
aatctttttacaattttcgaagaaaatttgTGTTAAATTGAAATACTATG
TAAAACACTTTGTAATGACTGATTTGTGTTAATTATTGACCTTTCATAAC
AAAAAgcaaaataatgataaaattaataataacaaaataaattgtcaCGT
GCATTTTTCCTGGGTTAAATACTTGAGTAGTTATAAGTGTTGTAAGGTAT
ctaatttttcttggaaaatacaagaaactattttaggaaatttccttaaa
aatacaggaaaatatttcaatatgatgaaaatttaatatacaagaaaata
ttttgttcattttcctttgaaaatacgagAAAATGCATTTATACCTTTAT
AATATCTCAAAAATGACAGCGAGTGAAGtgagttttttttaatgatgaAG
AGCTGTCTTGGGCGACGGGACGGCTAGTTAGGTAGATTATGAGATaaaga
atatattttataagatcTTTAATCTCTTTTTACTTCACGTTCAATTTTTT
CAGAAtgaataattttagattttcttttgtttttggttgttagAATTATC
AGCTGGATATTGGTTATGGACTATAGATCACTATATTTTTACATTTCAGT
GATTTTTAGCCAAGATTGTTTTAGAAATGGACATCACAGAATATTTGGAG
GAAAATGTAGAAACTCGTATTTTTCAATCACCTATCCCAGAAAGTTGTAA
AAACAGTCCTTGCTGTCTAGGGATAGATGAAGCTGGAAGAGGACCTGTTT
TAGGTAAGAAAGTTTTTAatacactttttaatactgGCAGACATTGAAGA
TAAGGAAAGTAGAGTGATCTTGCTTTTACAGTTAAACAATTTAAAatgta
taataataatatcatTGTTATTTATACAAATAAACGAAAtataatttgat
tttgattattGTATGATATGATGTTATAGGCCCAATTAAGATCTAATGAG
CTTAGATAAAGAAAAGTATGAAAAGTTTTCAAAGTTCCTTTCAAAATAAT
CTTTTGTCTTTAGGTCCGATGGTTTATGGCATTTGTTACTGTCCAATATC
TTTTATGGAAGAATTGAAAGAACTAGGATTCGCGGGTtggtatttcaaat
tttaatgaaaaatgctcAGTTTGATACAATTCTTTCAATGTTAAAAACTA
TATATGATAAACTGTACCgagtgcgccacaaaaaagtttctctctttaaa
aagtttttttgtcgaaatctgaaaattttaaaagaaccatacCTATTCCG
TTTGtgagaagaaagataaactcaaattttgatgggtcattatTTGAATT
TGGTTAATTAGATGTTCTATAATAtgctctattgaataaaaaaataactt
tctgaaagtggtcaaaaacgttaaaaatcgacctatcaaattaaacagaa
gcataattacatgacgCATCATTATTTTCgtttcagccattaaaaatgat
aattagctgccTAAATGACCTTTTATtttataaaggaaggttgaatttca
ataaaaagaagaaaattcgtagaaaaaggccaaaaaatctggtaaaattc
ataaaactacatcaaatatgggtttcgaggaaCATCCATCATTACAAAgt
ctttatccagtctagaaccaaaaatataaggaaaataTGATTTCGGTATA
ATTAAAttaagtgattttgatgaagattttaaacccttttgacccatcag
tttcaaaatttatgtatttaattattgaaaaatgcttttaatcacgtaaa
ggctattgcgattgccaattttaaaataaaaatttgatagatcgattttt
aacgttttcgagcactttctgaaagtaaattttttgttcaattgagcata
acttttgatctaatgaatcgaatttgataaatgacccatcaaaatttaag
tttatcttacTTCTTtgcaatgaaataggaatggttcttttaaaattttt
agattttgagaaaattagtttcaaagagagaaacttttttatggcgcacc
cggtagaaatGTATCAACTTTTAGTTTTAGAGTTGGAACTAATCCCTTTT
CATGAAATTTGAAAGAATTGTTAActttatgtttttaaaatttacattGT
CTTACTTTGACAGACtccaaaacattgaaaaaagaagacagaGATAAACT
TTTATCAGTAATTGAGCAAAACATTGAAAACATTGGATGGGCTATCAAAA
TTATATCACCAACCTCACTATCAAATGATATGCTGAGAAGGTATATTTTA
GAACCTTTCTATAACATGCATTGCTTAGTTACTGTGAAATTCATGAGACT
TTTCTGCTTTTCTAGGAGATATTTTGAGATGATTATGTATGATATTTACA
TTTTTGTTGAGTGTGACCAAGGCGTAAACACTTGCtggtcaaaataaaat
taatgcTTCCTTTTTAGTATCAGCCTAACATAGAAACactaaatctttat
ttttgattttgtacctTCAGCACAAAAATCAGTTTGAATGAGATTTCACA
CAATGCAGCAATTGAATTGACCAAAGTTACAATTAAAGACGGAGCTGACA
TCAAGGAGGTATGGAGCGGAGACATTGTTTTTAAACATCCCCTTGGATTA
AATCCCCTATGGTAAATGAGTCACATTGCTCTCTTTGTTCTCTATTTATT
CAAGATAATTGGGATAATGATAAGATAGATATTTGTATAGTAAGAGTCCT
TGACCCTTAATGATTTACTATTTGTCCTGTTCAGAGGcaatttcccaaaa
tatttttttcatccgTANtatacaagaaaatatttttgttcagGCTGGAC
TTTGAAATGTTGGTTTGCTGTAACCCTACGTGGAAACATGTTGACCAAAA
AAATTTACTATAATTATATTTACAATAACTATTGTTATGTAATGttcagg
gtggaaatttttgaaagtgagactaatacagcagaatcagggcaaaaaaa
ttcgaaattgaTTGATCAGCGGATCCCCCCCGGGGAATTATTGTTAGGTA
GTTATACTTAGGGGCTTATTAGGTGcccaaaagtaaaattaaaaaataca
tttaatgTCTCAAAAATGACAGCAGTAAAGGAAGCTTGATTATCATCGTA
AAGAAGAGTCTTTTCGGACGACGAGGGCTAGTTTTGATTATgaatatttc
tatttctttatttcaaTAGATGTATGTTGACACAGTTGGCCCAGCTCAAA
AATATCAGGAcaaattatcagaaattttcaaatcaataaatGTTACTGTG
ACACCAAAAGCTGATTCCAAATTCCCAATTGTCAGTGCTGCTAGTATTTG
TGCTAAGGTATGATCAGCCCCAAACCAAACTAAATGATTATAAGTCCact
tttttacattttcgaCAAAGTTAAGATGATGCTAGTACTTGTATGATTAA
GTTTAATATTTATATTTCTTTTCGAATTTAgtattttagacaaaattctt
gtgtacaaaaaattttaatgaacaaaatttttttttcaaaggttgCACGT
GATCAATGTTTAGAAGGGTGGAAATTTGGTGAAGGGGAATTCCCTACTGA
ATATGGGTGTGGTTATACATCAGGTAAATATTTAAATCATAATAGCAGAA
ACTCTTTTATTAATGGCACTTGAATCAGATTTGCCCTCTTTAGAGCAAAA
ATTGATAATGGCTTCTTGTAATAtgtatgaaaattttttatgttgGAAGG
TATAAGTTCTTTGAATTTTCTCTTGATAGATTCACTGACACAAAAATGGT
TGAAAGACGTCATCGATCCTGTATTTGGACATCCACAATTTGTGAGGTTT
GGCTGGTCAACCTGTAGCGAGATGTTAAAAAAACATGCCCGAGACGTTAC
GTGGTATGATAATTTagtttaaaggaagaaattttggcaaaacgAATTTG
GCAGATTTAGCAGCAATCCTGCAAATTAAGTTctcacaaaagtttttttt
ttcagccatccatcaaatttgaatttgtttattCATTATCCCAGGGCTTt
aaacaggttttttgcttatttgatagtgtttttggtcaaaaataaaattc
atccgccaaattaaattcttacCAAAATTTCTCCCTTTAAGGTAGTTGTA
TTCTTATCAATAGACTACCATATTTCAGTTTTACTTATTTCTTAAGTTCA
ACAAATCTTATATAGTTGAAAGaccattttttgtcattattgaCAAATTT
AAACCATCAGTATAGAAAGTGGCAAATACCCagtgtttgttttgaaaaga
gaactTCATGATATGAATTTTTGCTATTAATATAGTATTTCACAAATTAT
TGTGTTCTTAGATTTAAACAATTaatctaaaaaaattattttctctctCT
TAGGGAGGATGATGACGATGAGGGAAAacctaaaaagaagaaaagttccT
TTGCCATCACGTCATTCTACACTCAAgagaaaaacaaccaaaaagtTGAC
CACTGTCGATTCTTCAAAGAACGAAACCTTCAACAAGTCTCCTCTTTATG
AtaagaaattttcaactttgCAGTCAATCATTTGAGTGAACTGTTCGATT
ATTTAACTGTATCGTACAGTTTTTACGCACACACTCAAGGTGAACAATAA
GGAAATGTATTTCTTTTCGGACCATGAACCTTTACAATCATCACTGTGTA
CATGATATTAAAAGAAAGGAgtaataaatgaataaatgatTTACAAAATA
ATTTGACATTGTATTGGACATTTTGTTTCTCAACTTACTACTGCACATGg
gatcatagtcattataaaaaactcgctctggcaatgtattgttttagctt
tttgtttaattttcttttgttacaaacaaaaggcaagttgcgatttgaat
actttttgatcacattaccaaaatctcctcttgggattggtctattttct
aatcacatgatcaaaaagctTGCAAAATAAATCTATTTTGGTACATAAGC
TCTatctttttacaataaaaagagaaaaaagccTTCcactgtttttataa
tgactatgatggGATGATGCCAATAAAGAAAATACTGTTTTTATGGATAT
TAGTAAAATTAATTAACATAAACCTGACTTACCATATTGGTTGCAATCCA
AATGCACCATTACAAATATCTGTGATATGGGTTTATTTCaagattgtttt
gtttatttataacgctgaaatatataaaaattgaaagatttttatgcTAT
TATTTGTTGagcattattttttttcatttctttatgtTAAAATAAATACT
TCAATGAATCAATCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038133XLOC_038133Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060628-exon-scaffold_348-1491911889:89028..89146TCONS_00060628-exon-scaffold_348-1491911889:89028..89146Clytia hemisphaericaexon
TCONS_00060628-exon-scaffold_348-1510915933:89028..89146TCONS_00060628-exon-scaffold_348-1510915933:89028..89146Clytia hemisphaericaexon
TCONS_00060628-exon-scaffold_348-1575043694:89028..89146TCONS_00060628-exon-scaffold_348-1575043694:89028..89146Clytia hemisphaericaexon
TCONS_00060628-exon-scaffold_348-1491911889:96727..96880TCONS_00060628-exon-scaffold_348-1491911889:96727..96880Clytia hemisphaericaexon
TCONS_00060628-exon-scaffold_348-1510915933:96727..96880TCONS_00060628-exon-scaffold_348-1510915933:96727..96880Clytia hemisphaericaexon
TCONS_00060628-exon-scaffold_348-1575043694:96727..96880TCONS_00060628-exon-scaffold_348-1575043694:96727..96880Clytia hemisphaericaexon
TCONS_00060628-exon-scaffold_348-1491911889:97141..97212TCONS_00060628-exon-scaffold_348-1491911889:97141..97212Clytia hemisphaericaexon
TCONS_00060628-exon-scaffold_348-1510915933:97141..97212TCONS_00060628-exon-scaffold_348-1510915933:97141..97212Clytia hemisphaericaexon
TCONS_00060628-exon-scaffold_348-1575043694:97141..97212TCONS_00060628-exon-scaffold_348-1575043694:97141..97212Clytia hemisphaericaexon
TCONS_00060628-exon-scaffold_348-1491911889:98241..98367TCONS_00060628-exon-scaffold_348-1491911889:98241..98367Clytia hemisphaericaexon
TCONS_00060628-exon-scaffold_348-1510915933:98241..98367TCONS_00060628-exon-scaffold_348-1510915933:98241..98367Clytia hemisphaericaexon
TCONS_00060628-exon-scaffold_348-1575043694:98241..98367TCONS_00060628-exon-scaffold_348-1575043694:98241..98367Clytia hemisphaericaexon
TCONS_00060628-exon-scaffold_348-1491911889:98598..98685TCONS_00060628-exon-scaffold_348-1491911889:98598..98685Clytia hemisphaericaexon
TCONS_00060628-exon-scaffold_348-1510915933:98598..98685TCONS_00060628-exon-scaffold_348-1510915933:98598..98685Clytia hemisphaericaexon
TCONS_00060628-exon-scaffold_348-1575043694:98598..98685TCONS_00060628-exon-scaffold_348-1575043694:98598..98685Clytia hemisphaericaexon
TCONS_00060628-exon-scaffold_348-1491911889:99297..99434TCONS_00060628-exon-scaffold_348-1491911889:99297..99434Clytia hemisphaericaexon
TCONS_00060628-exon-scaffold_348-1510915933:99297..99434TCONS_00060628-exon-scaffold_348-1510915933:99297..99434Clytia hemisphaericaexon
TCONS_00060628-exon-scaffold_348-1575043694:99297..99434TCONS_00060628-exon-scaffold_348-1575043694:99297..99434Clytia hemisphaericaexon
TCONS_00060628-exon-scaffold_348-1491911889:99619..99700TCONS_00060628-exon-scaffold_348-1491911889:99619..99700Clytia hemisphaericaexon
TCONS_00060628-exon-scaffold_348-1510915933:99619..99700TCONS_00060628-exon-scaffold_348-1510915933:99619..99700Clytia hemisphaericaexon
TCONS_00060628-exon-scaffold_348-1575043694:99619..99700TCONS_00060628-exon-scaffold_348-1575043694:99619..99700Clytia hemisphaericaexon
TCONS_00060628-exon-scaffold_348-1491911889:99857..99980TCONS_00060628-exon-scaffold_348-1491911889:99857..99980Clytia hemisphaericaexon
TCONS_00060628-exon-scaffold_348-1510915933:99857..99980TCONS_00060628-exon-scaffold_348-1510915933:99857..99980Clytia hemisphaericaexon
TCONS_00060628-exon-scaffold_348-1575043694:99857..99980TCONS_00060628-exon-scaffold_348-1575043694:99857..99980Clytia hemisphaericaexon
TCONS_00060628-exon-scaffold_348-1491911889:100481..101394TCONS_00060628-exon-scaffold_348-1491911889:100481..101394Clytia hemisphaericaexon
TCONS_00060628-exon-scaffold_348-1510915933:100481..101394TCONS_00060628-exon-scaffold_348-1510915933:100481..101394Clytia hemisphaericaexon
TCONS_00060628-exon-scaffold_348-1575043694:100481..101394TCONS_00060628-exon-scaffold_348-1575043694:100481..101394Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_348supercontigscaffold_348:89028..101394 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.3011	18.6232	17.6017	18.6497	8.12442	6.42002	7.74547	7.25122	1.14147	1.93513	1.4036	1.96824	1.7836	2.72687	1.82987	1.99307	2.44618	3.31886	1.85825	1.60266	6.78418	4.0456	7.43139	8.28644	12.0574	17.3193	5.14263	4.84116	5.69907	7.26731
Blast
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BLAST of TCONS_00060628 vs. Swiss-Prot (Human)
Match: RNH2A (Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASEH2A PE=1 SV=2)

HSP 1 Score: 268.855 bits (686), Expect = 3.090e-84
Identity = 135/304 (44.41%), Postives = 195/304 (64.14%), Query Frame = 3 
Query:  147 MDITEYLEENVETRIFQSPIPESCKNSPCCLGIDEAGRGPVLGPMVYGICYCPISFMEELKELGFADSKTLKKEDRDKLLSVIEQNIENIGWAIKIISPTSLSNDMLRSTKISLNEISHNAAIELTKVTIKDGADIKEMYVDTVGPAQKYQDKLSEIFKSINVTVTPKADSKFPIVSAASICAKVARDQCLEGWKFGEG--EFPTEYGCGYTSDSLTQKWLKDVIDPVFGHPQFVRFGWSTCSEMLKKHARDVTWXXXXXXXXXXXXXSSFAITSFYTQEKNNQKVDHC-RFFKERNLQQVSSL 1049
            MD++E   +N       SP+P  C+  PC LG+DEAGRGPVLGPMVY ICYCP+  + +L+ L  ADSKTL + +R++L + +E + + +GWA+ ++SP  +S  ML   K +LN +SH+ A  L +  +  G ++ +++VDTVG  + YQ +L + F  I VTV  KAD+ +P+VSAASICAKVARDQ ++ W+F E   +  T+YG GY +D  T+ WLK+ ++PVFG PQFVRF W T   +L+K A DV WED   E +   +K    ITS++  E +  +     R+F ER L+  +SL
Sbjct:    1 MDLSELERDNTGRCRLSSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKME-DTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWEDSASENQEGLRK----ITSYFLNEGSQARPRSSHRYFLERGLESATSL 299
The following BLAST results are available for this feature:
BLAST of TCONS_00060628 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RNH2A3.090e-8444.41Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASE... [more]
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