TCONS_00060619 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060619
Unique NameTCONS_00060619
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length877

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060619 ID=TCONS_00060619|Name=TCONS_00060619|organism=Clytia hemisphaerica|type=transcript|length=877bp
gaCTAGACTAGCAACTACGGGTTATTACCTCGATTGCGGTGGCACACTTA
TCTCTGATCGCTGGGTGTTGAGTGCTGCACATTGTTTCACTGCTGCGGAT
AAAGACTCACTTACCGCTACTTTAGGTGACCTTACAATTACTCAGGATGA
AGAAGGGGAGCAGATAAGAAACATTAAACAGATCATTCCACACCCGCAAT
ACAATGATAACACCCTTGACAACGACTATTTGTTGATCGAACTTGACAGC
CCTGTAACAATCACCGATTACGTGCGGCCCGCTTGCTTACCATTTGGTCT
TTCAAAAAATGCGTTCGATAACGCAAAAAGGACTTGTTATATTACTGGCT
GGGGAACAACATCTTCTGGTGCAGATTATATTCCTGATGTGGTCCATTAG
CATGCAAGGATGCATCCACTAACACATGGTATGCCTGGGGAATCACATCT
TGGGGAGACGGTTGTGCTATAAGAGGAAAACCTGGAGTCTACGCATCTGT
CGTTGAGATGTTAGATTGGATTGGAACCAACACAGGAATAACAGCATCAA
AATAAATATAGAGTCCATAATAGTTCCACTCATAAATAACCTAAATGAAA
CACGGTGTACGGTACGGTGTACGGTGGCCTCTATCTGCCatgtgttttat
tttgtttttatggcAGTAAAGATGTACGATTTTATACTTGTTGCCTTGTT
TTccgaaaatgcactttttttattcatatatttttggagacttttcaatt
tttttttaaaaacatcaaatttataCTTaacaaattttgcaattttgtaa
gtttaacattttttgatttAGCGAATCCGTAAGTCTAATATTTCATAGCT
TGCAAATCCGTAACTCTAATATTTCAT
Run BLAST on NCBI

protein sequence of TCONS_00060619-protein

>TCONS_00060619-protein ID=TCONS_00060619-protein|Name=TCONS_00060619-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
TRLATTGYYLDCGGTLISDRWVLSAAHCFTAADKDSLTATLGDLTITQDE
EGEQIRNIKQIIPHPQYNDNTLDNDYLLIELDSPVTITDYVRPACLPFGL
SKNAFDNAKRTCYITGWGTTSSGADYIPDVVH
Run BLAST on NCBI

transcript from alignment at scaffold_348:969..4779+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060619 ID=TCONS_00060619|Name=TCONS_00060619|organism=Clytia hemisphaerica|type=transcript|length=3811bp|location=Sequence derived from alignment at scaffold_348:969..4779+ (Clytia hemisphaerica)
gaCTAGACTAGCAACTACGGGTTATTACCTCGATTGCGGTGGCACACTTA
TCTCTGATCGCTGGGTGTTGAGTGCTGCACATTGTTTCACTGCTGCGGAT
AAAGACTCACTTACCGCTACTTTAGGTATAGTAAAAAGCcctatcggcca
aaacttagtcggccttaattattagttggccttaattattagtcggcctt
aattattagtcggccctaattttagtcacctNAGCCCTATCGggcaaaac
ttagtcggccttaattttagtcggccttaattattagtcggccctaattt
tagtcacctcgtcaaaatttagtcactaagggctgactaataattaagtt
ttgtcattttaaaatttttagtcggaccaaattttagtcggaccaaattt
tagtcggccctaattttagtcactttAGGGCCGACTAACTATATTTGCCG
ATAAGATAAGGTAGAATAAATTTATCGTTGGCCTTGTTGTAGATATTGTA
CGTGTAAAGCCTAGTAATGTAGCACTTTTTTCATCATTCAGATGATAGTT
GACGGACTATACTATCTaaactagacgtcacccgcttttttctaaacaat
tatctcccgaatagacggggggtccgaataaaaGGGGGGTGGGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNGGGGGGGGGGTAATTCGacgacagaattttttttaactga
tataaatttcaacaacaaaaaaagaaactttaacaaatgaacacgtaaaa
taagaaccaatactaacaaaaaggaaaatttaagtatctacactgtaata
aaatattaaattattcgaatttgattagcaatctttataaatttggtatc
attggaaagatattagttagtggaacaatttgcaataaaaaaatctttaa
aaaaattctaaaaatgaagatgaaaatgaagaagaaaaaaatgaagatct
tgtagaaaagtgctacaactatcattttcattaaagtgAATCCNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttctcaaa
aataatcattcagtcaaaagatatcaaacaaagttataagctaattgacg
tctaaaaacgctgttttctgctgttttctgctgttttttgggggtcaatc
acttatcaactttgtatcataactttatattgaataaatattttagcaaa
atttttttacagtgatgacctcaaagaatctctccagtgaaaatgaaagt
tatagcacttttctacgagatcttcatttttttcttcttcattttcatct
tcgtttttggaatttttttatagaacttttcattttaatttgttCTACTC
GCAAacatctctccaacgataccaaatttataaagattgaagaatttctt
caaaagttataggttaATGAAAGTGCACACTTaccgtgaacagactttag
ttagTTAAGTTATTCGTATTGACTTTATTGTTTGATTTCTAGGTGACCTT
ACAATTACTCAGGATGAAGAAGGGGAGCAGATAAGAAACATTAAACAGAT
CATTCCACACCCGCAATACAATGATAACACCCTTGACAACGACTATTTGT
TGATCGAACTTGACAGCCCTGTAACAATCACCGATTACGTGCGGCCCGCT
TGCTTACCATTTGGTCTTTCAAAAAATGCGTTCGATAACGCAAAAAGGAC
TTGTTATATTACTGGCTGGGGAACAACATCTTCTGGTGCAGATTATATTC
CTGATGTAAGTTTTtctccttgtttttttttgaaatacacgcttttttaa
taagaatatccaaacttttcaaagtttttggatgttctcaactttttgag
ctttcaatccaaaaaaggtgatctaaagtttttattttcaccattttgtg
agtattttttatggaattttccTACAAAAtgtgtgttttagagtccgtcc
acaaagcctcaaaatgttcttaatctttgctatcgaagccttacgtTATA
AATCATATAAAGTATGATCTCGTCATTCAAAGATTtctgttcttgtatag
tttgcgGTTGTTATAAAAAGACGTGTAGTGCACTGCCATAATTGCTCTAA
TTTAGTGTGTCCTTTAATTGCGGATAAATTATATTGGCAATTTCGGACCA
ATTTAAATCCTCTAATTATTAGTGCGGGTAGTGTTTCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAC
CATTAAtgataacacccccttctcatagagccactgggaacccttcccac
tgaaagAATTGGCTGAAATATAGTCCCGGTGGAAATTTATAATTCAATTT
TTGTCCacactaaaaataatcaaataaaccaatcctcacctCAAAAAATT
TAGCTACTTTTTCCATTCCCACTAaacattttctgaaaacaaaagaattc
aaataattttcaaattaaacaaTCCCCtcctatattgttggaaaattgca
aatcaaGCTAGCAATATATTTGTgtacaccttttcaatatattgccggta
TTCGGCAATATACGGTATTATCAATATATATTGCGTacagtgtatgtagc
cctttagtCAAATAATATCAATTCGCCTTATACCTCAGAGTAAGTTATAT
TTTAGCATCCTTTCTTTACCAGGTGGTCCATTAGCATGCAAGGATGCATC
CACTAACACATGGTATGCCTGGGGAATCACATCTTGGGGAGACGGTTGTG
CTATAAGAGGAAAACCTGGAGTCTACGCATCTGTCGTTGAGATGTTAGAT
TGGATTGGAACCAACACAGGAATAACAGCATCAAAATAAATATAGAGTCC
ATAATAGTTCCACTCATAAATAACCTAAATGAAACACGGTGTACGGTACG
GTGTACGGTGGCCTCTATCTGCCatgtgttttattttgtttttatggcAG
TAAAGATGTACGATTTTATACTTGTTGCCTTGTTTTccgaaaatgcactt
tttttattcatatatttttggagacttttcaatttttttttaaaaacatc
aaatttataCTTaacaaattttgcaattttgtaagtttaacattttttga
tttAGCGAATCCGTAAGTCTAATATTTCATAGCTTGCAAATCCGTAACTC
TAATATTTCAT

Coding sequence (CDS) from alignment at scaffold_348:969..4779+

>TCONS_00060619 ID=TCONS_00060619|Name=TCONS_00060619|organism=Clytia hemisphaerica|type=CDS|length=1197bp|location=Sequence derived from alignment at scaffold_348:969..4779+ (Clytia hemisphaerica)
aCTAGACTAGCAACTACGGGTTATTACCTCGATTGCGGTGGCACACTTAT
CTCTGATCGCTGGGTGTTGAGTGCTGCACATTGTTTCACTGCTGCGGATA
AAGACTCACTTACCGCTACTTTAGGTGACCTTACAATTACTCAGGATGAA
GAAGGGGAGCAGATAAGAAACATTAAACAGATCATTCCACACCCGCAATA
CAATGATAACACCCTTGACAACGACTATTTGTTGATCGAACTTGACAGCC
CTGTAACAATCACCGATTACGTGCGGCCCGCTTGCTTACCATTTGGTCTT
TCAAAAAATGCGTTCGATAACGCAAAAAGGACTTGTTATATTACTGGCTG
GGGAACAACATCTTCTGGTGCAGATTATATTCCTGATGTGGTCCATTAGa
CTAGACTAGCAACTACGGGTTATTACCTCGATTGCGGTGGCACACTTATC
TCTGATCGCTGGGTGTTGAGTGCTGCACATTGTTTCACTGCTGCGGATAA
AGACTCACTTACCGCTACTTTAGGTGACCTTACAATTACTCAGGATGAAG
AAGGGGAGCAGATAAGAAACATTAAACAGATCATTCCACACCCGCAATAC
AATGATAACACCCTTGACAACGACTATTTGTTGATCGAACTTGACAGCCC
TGTAACAATCACCGATTACGTGCGGCCCGCTTGCTTACCATTTGGTCTTT
CAAAAAATGCGTTCGATAACGCAAAAAGGACTTGTTATATTACTGGCTGG
GGAACAACATCTTCTGGTGCAGATTATATTCCTGATGTGGTCCATTAGaC
TAGACTAGCAACTACGGGTTATTACCTCGATTGCGGTGGCACACTTATCT
CTGATCGCTGGGTGTTGAGTGCTGCACATTGTTTCACTGCTGCGGATAAA
GACTCACTTACCGCTACTTTAGGTGACCTTACAATTACTCAGGATGAAGA
AGGGGAGCAGATAAGAAACATTAAACAGATCATTCCACACCCGCAATACA
ATGATAACACCCTTGACAACGACTATTTGTTGATCGAACTTGACAGCCCT
GTAACAATCACCGATTACGTGCGGCCCGCTTGCTTACCATTTGGTCTTTC
AAAAAATGCGTTCGATAACGCAAAAAGGACTTGTTATATTACTGGCTGGG
GAACAACATCTTCTGGTGCAGATTATATTCCTGATGTGGTCCATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038130XLOC_038130Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060619-proteinTCONS_00060619-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060619-exon-scaffold_348-1491911889:969..1093TCONS_00060619-exon-scaffold_348-1491911889:969..1093Clytia hemisphaericaexon
TCONS_00060619-exon-scaffold_348-1510915933:969..1093TCONS_00060619-exon-scaffold_348-1510915933:969..1093Clytia hemisphaericaexon
TCONS_00060619-exon-scaffold_348-1575043694:969..1093TCONS_00060619-exon-scaffold_348-1575043694:969..1093Clytia hemisphaericaexon
TCONS_00060619-exon-scaffold_348-1491911889:2661..2923TCONS_00060619-exon-scaffold_348-1491911889:2661..2923Clytia hemisphaericaexon
TCONS_00060619-exon-scaffold_348-1510915933:2661..2923TCONS_00060619-exon-scaffold_348-1510915933:2661..2923Clytia hemisphaericaexon
TCONS_00060619-exon-scaffold_348-1575043694:2661..2923TCONS_00060619-exon-scaffold_348-1575043694:2661..2923Clytia hemisphaericaexon
TCONS_00060619-exon-scaffold_348-1491911889:4291..4779TCONS_00060619-exon-scaffold_348-1491911889:4291..4779Clytia hemisphaericaexon
TCONS_00060619-exon-scaffold_348-1510915933:4291..4779TCONS_00060619-exon-scaffold_348-1510915933:4291..4779Clytia hemisphaericaexon
TCONS_00060619-exon-scaffold_348-1575043694:4291..4779TCONS_00060619-exon-scaffold_348-1575043694:4291..4779Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_348supercontigscaffold_348:969..4779 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.117664	0.62691	0.64637	0	0.151747	0	0.243919	0	0	11.831	15.0259	0	0	1.4794	1.68128	27.0562	18.0026	0	0	0	0.0553627	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001314Peptidase_S1A
IPR001254Trypsin_dom
IPR018114TRYPSIN_HIS
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
[Close]
BLAST of TCONS_00060619 vs. Swiss-Prot (Human)
Match: TRY2 (Trypsin-2 OS=Homo sapiens GN=PRSS2 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 8.324e-23
Identity = 58/125 (46.40%), Postives = 71/125 (56.80%), Query Frame = 2 
Query:   17 TGYYLDCGGTLISDRWVLSAAHCFTAADKDSLTATLGDLTITQDEEGEQIRNIKQIIPHPQYNDNTLDNDYLLIELDSPVTITDYVRPACLPFGLSKNAFDNAKRTCYITGWGTT-SSGADYIPD 388
            +GY+  CGG+LIS++WV+SA HC+    K  +   LG+  I   E  EQ  N  +II HP+YN  TLDND LLI+L SP  I   V    LP      A   A     I+GWG T SSGADY PD
Sbjct:   43 SGYHF-CGGSLISEQWVVSAGHCY----KSRIQVRLGEHNIEVLEGNEQFINAAKIIRHPKYNSRTLDNDILLIKLSSPAVINSRVSAISLP-----TAPPAAGTESLISGWGNTLSSGADY-PD 156
The following BLAST results are available for this feature:
BLAST of TCONS_00060619 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRY28.324e-2346.40Trypsin-2 OS=Homo sapiens GN=PRSS2 PE=1 SV=1[more]
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