TCONS_00060616 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060616
Unique NameTCONS_00060616
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length387

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060616 ID=TCONS_00060616|Name=TCONS_00060616|organism=Clytia hemisphaerica|type=transcript|length=387bp
GGCACATGTTTGCGAAGTCTGTTAATAAGGCCAATacctttattggcctt
ttttatctTCTCCTCAAGATGGTAATCGAAAGAGagttttgaatctaaga
taAGACCTAGGTGTTTTTGGTGCTCACAGACAGCGATGTTAGTGTTATTG
AAGGatattactggagcattagcaGGAGTGATTCTGCAGGTAAAATAGAC
TTCCACAGCTTGTTTAGAAGGGTCTGGGTTgaaagacatcttccattgac
gaGCCCACTCACTTATCCTGGCAAGATCTCTGTTTTCATCTCAGTTTAGC
TTTGACATCCGCGGAGTACAGacgtgtcaaaatttttggCGCTTAAAACA
CAACACACCTAGTTTCTCGagccaaattttgttttaa
Run BLAST on NCBI

transcript from alignment at scaffold_346:76347..76733

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060616 ID=TCONS_00060616|Name=TCONS_00060616|organism=Clytia hemisphaerica|type=transcript|length=387bp|location=Sequence derived from alignment at scaffold_346:76347..76733 (Clytia hemisphaerica)
ttaaaacaaaatttggctCGAGAAACTAGGTGTGTTGTGTTTTAAGCGcc
aaaaattttgacacgtCTGTACTCCGCGGATGTCAAAGCTAAACTGAGAT
GAAAACAGAGATCTTGCCAGGATAAGTGAGTGGGCtcgtcaatggaagat
gtctttcAACCCAGACCCTTCTAAACAAGCTGTGGAAGTCTATTTTACCT
GCAGAATCACTCCtgctaatgctccagtaatatCCTTCAATAACACTAAC
ATCGCTGTCTGTGAGCACCAAAAACACCTAGGTCTtatcttagattcaaa
actCTCTTTCGATTACCATCTTGAGGAGAagataaaaaaggccaataaag
gtATTGGCCTTATTAACAGACTTCGCAAACATGTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038127XLOC_038127Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060616-exon-scaffold_346-1491911889:76347..76733TCONS_00060616-exon-scaffold_346-1491911889:76347..76733Clytia hemisphaericaexon
TCONS_00060616-exon-scaffold_346-1510915933:76347..76733TCONS_00060616-exon-scaffold_346-1510915933:76347..76733Clytia hemisphaericaexon
TCONS_00060616-exon-scaffold_346-1575043694:76347..76733TCONS_00060616-exon-scaffold_346-1575043694:76347..76733Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_346supercontigscaffold_346:76347..76733 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.680047	0.552957	0.825654	0.869108	1.07514	0.212397	1.53749	3.11866	0.526546	0.806736	0.631173	0	1.10168	0.55686	0.33953	0.445855	0.299247	0.729419	3.27132	2.85913	0.943219	0.679416	0.457057	0.415531	0.24507	0.381969	0.900423	0.583342	1.37477	0.246175
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060616 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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