TCONS_00060610 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060610
Unique NameTCONS_00060610
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length361

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060610 ID=TCONS_00060610|Name=TCONS_00060610|organism=Clytia hemisphaerica|type=transcript|length=361bp
CACAAATATATTTATCATAAATAAATAGACTATGCAAGGTGAATAAATAA
TATTTCTATAGTGTAAAAATAATCCTGTACCTCCTTAAAAATCTGcgtaa
atattttcataaaatttccaaataaaatgtgaaaatcaaagtaaatttga
taaaatgatATAGTGATTTATAACTAATGCTAATTAACTCCAGGTCACtt
tacaattttacagtttTTTGTTCGGGGTTTTTATCGAGTCCTTATGTCAT
TTCCCGAATACTCACTTCTCGAGATCCGTAATCAAAAGCATTGcgggcct
cgttttcaaatgaaataattGCTTCAAACGACATTTCCCAAAAGGCTGTT
TTCAATTTTGG
Run BLAST on NCBI

transcript from alignment at scaffold_345:190769..191129

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060610 ID=TCONS_00060610|Name=TCONS_00060610|organism=Clytia hemisphaerica|type=transcript|length=361bp|location=Sequence derived from alignment at scaffold_345:190769..191129 (Clytia hemisphaerica)
CCAAAATTGAAAACAGCCTTTTGGGAAATGTCGTTTGAAGCaattatttc
atttgaaaacgaggcccgCAATGCTTTTGATTACGGATCTCGAGAAGTGA
GTATTCGGGAAATGACATAAGGACTCGATAAAAACCCCGAACAAAaaact
gtaaaattgtaaaGTGACCTGGAGTTAATTAGCATTAGTTATAAATCACT
ATatcattttatcaaatttactttgattttcacattttatttggaaattt
tatgaaaatatttacgCAGATTTTTAAGGAGGTACAGGATTATTTTTACA
CTATAGAAATATTATTTATTCACCTTGCATAGTCTATTTATTTATGATAA
ATATATTTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038122XLOC_038122Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060610-exon-scaffold_345-1491911889:190769..191129TCONS_00060610-exon-scaffold_345-1491911889:190769..191129Clytia hemisphaericaexon
TCONS_00060610-exon-scaffold_345-1510915933:190769..191129TCONS_00060610-exon-scaffold_345-1510915933:190769..191129Clytia hemisphaericaexon
TCONS_00060610-exon-scaffold_345-1575043694:190769..191129TCONS_00060610-exon-scaffold_345-1575043694:190769..191129Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_345supercontigscaffold_345:190769..191129 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.700218	0.455216	0.528549	0.258551	0.314761	0.248729	4.80129	6.46143	6.09729	1.7054	3.78355	2.9535	1.55231	0.483627	0.530143	0.284462	0	1.07755	1.73681	2.59635	2.70804	2.31156	2.94381	1.70313	0.501196	2.01287	12.1618	5.46499	2.59063	1.05578
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060610 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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