TCONS_00060606 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060606
Unique NameTCONS_00060606
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length429

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060606 ID=TCONS_00060606|Name=TCONS_00060606|organism=Clytia hemisphaerica|type=transcript|length=429bp
AGAAGGCGACGGGAGAACAACAAAAATGTGCCTGTTTGGAACGATCTCTG
CAGGGTAgtttaaactaaaaattgaatacaaaagaaaactaTCAAAATGG
ATGAAATGCTAGGCAATGTTCATAGACCCCTGAATGCTAGAAAATTGAAC
TATAAAGatagaaaattaaaaacttaaGGAGCTGTTTTGGACTACATGGA
TGAGAGTAGAGACGAACTATCCAAAATGACAGTCAAACTGGACGAATATA
GGGTTTCTCTGCGAGATGACCACATCGATCTTGAACAAAACATTGATGAA
GACGAATACTCCAAAAAGTTTGCCGAGAGTTGCAAACGAATAAGTGATCT
CATCAAAGCCAAAATCATCCAAATCCTGGACGCTAAAGACACCAAAAAGA
CTGAAGAGCAAGCTGCTGAGGAAGTCACC
Run BLAST on NCBI

transcript from alignment at scaffold_345:160490..160918

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060606 ID=TCONS_00060606|Name=TCONS_00060606|organism=Clytia hemisphaerica|type=transcript|length=429bp|location=Sequence derived from alignment at scaffold_345:160490..160918 (Clytia hemisphaerica)
GGTGACTTCCTCAGCAGCTTGCTCTTCAGTCTTTTTGGTGTCTTTAGCGT
CCAGGATTTGGATGATTTTGGCTTTGATGAGATCACTTATTCGTTTGCAA
CTCTCGGCAAACTTTTTGGAGTATTCGTCTTCATCAATGTTTTGTTCAAG
ATCGATGTGGTCATCTCGCAGAGAAACCCTATATTCGTCCAGTTTGACTG
TCATTTTGGATAGTTCGTCTCTACTCTCATCCATGTAGTCCAAAACAGCT
CCttaagtttttaattttctatCTTTATAGTTCAATTTTCTAGCATTCAG
GGGTCTATGAACATTGCCTAGCATTTCATCCATTTTGAtagttttctttt
gtattcaatttttagtttaaacTACCCTGCAGAGATCGTTCCAAACAGGC
ACATTTTTGTTGTTCTCCCGTCGCCTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038118XLOC_038118Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060606-exon-scaffold_345-1491911889:160490..160918TCONS_00060606-exon-scaffold_345-1491911889:160490..160918Clytia hemisphaericaexon
TCONS_00060606-exon-scaffold_345-1510915933:160490..160918TCONS_00060606-exon-scaffold_345-1510915933:160490..160918Clytia hemisphaericaexon
TCONS_00060606-exon-scaffold_345-1575043694:160490..160918TCONS_00060606-exon-scaffold_345-1575043694:160490..160918Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_345supercontigscaffold_345:160490..160918 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.354033	0.314513	0.912948	1.42908	1.08736	0	0.829313	0.970491	0	0.504975	1.47042	0.2148	0.107251	0.891046	0	0	0	0	0	0	0.311835	0.456307	0.554701	0	0.346281	0.309047	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060606 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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