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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060605 ID=TCONS_00060605|Name=TCONS_00060605|organism=Clytia hemisphaerica|type=transcript|length=1619bp
taaacatctccgccactgcttactccacccggatttatcacgcctctcct
aaactattcccttttttagtgatcttgtgtagacgataggatcgtctaaa
aGGCAttattaaatatctttttttcaaatcgTCCTCAATTGTCtgaaaat
cgaaacaaaaaagtgaaacattctTTAGAAAGCTTatgatagaaaaaaag
aaatttcgcTGAAAAAGAATTATAGAAACGGATGACATAAGTATGGGAAA
TTTCATTGGCCTAACCTCTGTATCACTGAATTCTAAGTAGATAGTTTATT
CAATCGATCTATGCGGTGTCATTTTAGTGAAAGTTAAGACTACAAATATG
gaaaacaataaacaaaacaaaaattatactTTTAAATATAGAGAAATATT
AACCAGGTTGGTATTCATATTAACACGTTCGCTGCAAATTACGAGTATAC
TCGTAACGAGAGGTCAAAATACCGACAGTACGTCAAAGgtacataacttt
tgatacagaaACTTTCTGCGTCGTTTGGCATACAATTTGCAGGTATCCAA
AACAAAACTTAGGCCAAAGGAGCCTGCTGAAAGTCTAACTTGATAAAATT
CAAATTCGAAgttttgatttctgaaaaaagGCTCGGCAGCGAACGTTTTA
ACTAATGTTTCATTTTAACCataatttatctcaaaatgaaaatggaatcc
attttttctattatttacTCCATTCGATGACATCATTAACGACAGCGCTG
GTCATCCTAACCGCAATATTGGAGCTGTCTGTGGAACCTTTATGGATACC
AATGGAGTATATGTTGATATAATTTATATTATTAAAATTCGAACCAGCGA
AAACAGGACTGCCACTTTGGCCACCAGATGTATCGATGGTGTAGAAAAGG
ATATTAGAATTGGCTGACACTATAGGGCCTTGTTCTTCCCAATTGTAACC
ATATGGGGCATTTGAAGGATTACTCCCAGGATACCCGGAAATTAAGGCTT
GTTGGTTTACCGGAGACTCGTCTACGTACATTGCACATGCTCCTAAATAA
TTTGTTTTGGGGATAAGAATTGCTCCATAATCAAAATTGGATTTATTTGG
ACCAGCTGCTTTCCATCCTGCGGAAGCCCTCAAGCTAGAGGGGCCCACAG
TAAAAGCTCCCCAGGGTGCATATTTACCGTCGGCTCCAGGAACAACAGTG
ACTGATTCTGCAAACTTTCCAGTTGAAGTTTCATAGACACAATGTCCTGA
AGTTACAACGACGTCGTATTTGCTGCTATTAGTATAGCATAGCCAACCGG
TTCCAACATATTTCTTGGCTGAAAACGTCATTGATAATCGGCAAACCCAT
TGATATGGCACTTGTGTTGTGTCTTTCACTTCTTTTCGACCGTCATTACC
AAATGGCTTGAATACAATGGTTTCACCATAGGATAAAATAGCAGCTGGAA
CGCACGAATCTGACAATTCAATTATATCAGCATTTTTACTTGGGACGTGA
GGTGTTGACTCCATTTTCCAGCTTCTTGATCTCGAGAGCAAAAGAGACTG
CTGACAAAAAATTCAGCGACTTCTTATATACAGACCTCGTTGATCTATTT
TTAGTTGACAGTGGTCGTT Run BLAST on NCBI protein sequence of TCONS_00060605-protein >TCONS_00060605-protein ID=TCONS_00060605-protein|Name=TCONS_00060605-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
MESTPHVPSKNADIIELSDSCVPAAILSYGETIVFKPFGNDGRKEVKDTT
QVPYQWVCRLSMTFSAKKYVGTGWLCYTNSSKYDVVVTSGHCVYETSTGK
FAESVTVVPGADGKYAPWGAFTVGPSSLRASAGWKAAGPNKSNFDYGAIL
IPKTNYLGACAMYVDESPVNQQALISGYPGSNPSNAPYGYNWEEQGPIVS
ANSNILFYTIDTSGGQSGSPVFAGSNFNNINYINIYSIGIHKGSTDSSNI
AVRMTSAVVNDVIEWSK Run BLAST on NCBI transcript from alignment at scaffold_345:87314..88932 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060605 ID=TCONS_00060605|Name=TCONS_00060605|organism=Clytia hemisphaerica|type=transcript|length=1619bp|location=Sequence derived from alignment at scaffold_345:87314..88932 (Clytia hemisphaerica)
AACGACCACTGTCAACTAAAAATAGATCAACGAGGTCTGTATATAAGAAG
TCGCTGAATTTTTTGTCAGCAGTCTCTTTTGCTCTCGAGATCAAGAAGCT
GGAAAATGGAGTCAACACCTCACGTCCCAAGTAAAAATGCTGATATAATT
GAATTGTCAGATTCGTGCGTTCCAGCTGCTATTTTATCCTATGGTGAAAC
CATTGTATTCAAGCCATTTGGTAATGACGGTCGAAAAGAAGTGAAAGACA
CAACACAAGTGCCATATCAATGGGTTTGCCGATTATCAATGACGTTTTCA
GCCAAGAAATATGTTGGAACCGGTTGGCTATGCTATACTAATAGCAGCAA
ATACGACGTCGTTGTAACTTCAGGACATTGTGTCTATGAAACTTCAACTG
GAAAGTTTGCAGAATCAGTCACTGTTGTTCCTGGAGCCGACGGTAAATAT
GCACCCTGGGGAGCTTTTACTGTGGGCCCCTCTAGCTTGAGGGCTTCCGC
AGGATGGAAAGCAGCTGGTCCAAATAAATCCAATTTTGATTATGGAGCAA
TTCTTATCCCCAAAACAAATTATTTAGGAGCATGTGCAATGTACGTAGAC
GAGTCTCCGGTAAACCAACAAGCCTTAATTTCCGGGTATCCTGGGAGTAA
TCCTTCAAATGCCCCATATGGTTACAATTGGGAAGAACAAGGCCCTATAG
TGTCAGCCAATTCTAATATCCTTTTCTACACCATCGATACATCTGGTGGC
CAAAGTGGCAGTCCTGTTTTCGCTGGTTCGAATTTTAATAATATAAATTA
TATCAACATATACTCCATTGGTATCCATAAAGGTTCCACAGACAGCTCCA
ATATTGCGGTTAGGATGACCAGCGCTGTCGTTAATGATGTCATCGAATGG
AgtaaataatagaaaaaatggattccattttcattttgagataaattatG
GTTAAAATGAAACATTAGTTAAAACGTTCGCTGCCGAGCcttttttcaga
aatcaaaacTTCGAATTTGAATTTTATCAAGTTAGACTTTCAGCAGGCTC
CTTTGGCCTAAGTTTTGTTTTGGATACCTGCAAATTGTATGCCAAACGAC
GCAGAAAGTttctgtatcaaaagttatgtacCTTTGACGTACTGTCGGTA
TTTTGACCTCTCGTTACGAGTATACTCGTAATTTGCAGCGAACGTGTTAA
TATGAATACCAACCTGGTTAATATTTCTCTATATTTAAAagtataatttt
tgttttgtttattgttttcCATATTTGTAGTCTTAACTTTCACTAAAATG
ACACCGCATAGATCGATTGAATAAACTATCTACTTAGAATTCAGTGATAC
AGAGGTTAGGCCAATGAAATTTCCCATACTTATGTCATCCGTTTCTATAA
TTCTTTTTCAgcgaaatttctttttttctatcatAAGCTTTCTAAagaat
gtttcacttttttgtttcgattttcaGACAATTGAGGAcgatttgaaaaa
aagatatttaataaTGCCttttagacgatcctatcgtctacacaagatca
ctaaaaaagggaatagtttaggagaggcgtgataaatccgggtggagtaa
gcagtggcggagatgttta Coding sequence (CDS) from alignment at scaffold_345:87314..88932 >TCONS_00060605 ID=TCONS_00060605|Name=TCONS_00060605|organism=Clytia hemisphaerica|type=CDS|length=804bp|location=Sequence derived from alignment at scaffold_345:87314..88932 (Clytia hemisphaerica)
ATGGAGTCAACACCTCACGTCCCAAGTAAAAATGCTGATATAATTGAATT
GTCAGATTCGTGCGTTCCAGCTGCTATTTTATCCTATGGTGAAACCATTG
TATTCAAGCCATTTGGTAATGACGGTCGAAAAGAAGTGAAAGACACAACA
CAAGTGCCATATCAATGGGTTTGCCGATTATCAATGACGTTTTCAGCCAA
GAAATATGTTGGAACCGGTTGGCTATGCTATACTAATAGCAGCAAATACG
ACGTCGTTGTAACTTCAGGACATTGTGTCTATGAAACTTCAACTGGAAAG
TTTGCAGAATCAGTCACTGTTGTTCCTGGAGCCGACGGTAAATATGCACC
CTGGGGAGCTTTTACTGTGGGCCCCTCTAGCTTGAGGGCTTCCGCAGGAT
GGAAAGCAGCTGGTCCAAATAAATCCAATTTTGATTATGGAGCAATTCTT
ATCCCCAAAACAAATTATTTAGGAGCATGTGCAATGTACGTAGACGAGTC
TCCGGTAAACCAACAAGCCTTAATTTCCGGGTATCCTGGGAGTAATCCTT
CAAATGCCCCATATGGTTACAATTGGGAAGAACAAGGCCCTATAGTGTCA
GCCAATTCTAATATCCTTTTCTACACCATCGATACATCTGGTGGCCAAAG
TGGCAGTCCTGTTTTCGCTGGTTCGAATTTTAATAATATAAATTATATCA
ACATATACTCCATTGGTATCCATAAAGGTTCCACAGACAGCTCCAATATT
GCGGTTAGGATGACCAGCGCTGTCGTTAATGATGTCATCGAATGGAgtaa
ataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060605-exon-scaffold_345-1491911889:87314..88932 | TCONS_00060605-exon-scaffold_345-1491911889:87314..88932 | Clytia hemisphaerica | exon |
| TCONS_00060605-exon-scaffold_345-1510915933:87314..88932 | TCONS_00060605-exon-scaffold_345-1510915933:87314..88932 | Clytia hemisphaerica | exon |
| TCONS_00060605-exon-scaffold_345-1575043694:87314..88932 | TCONS_00060605-exon-scaffold_345-1575043694:87314..88932 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_345 | supercontig | scaffold_345:87314..88932 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008236 | serine-type peptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0008236 |
serine-type peptidase activity |
Blast
The following BLAST results are available for this feature:
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