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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060603 ID=TCONS_00060603|Name=TCONS_00060603|organism=Clytia hemisphaerica|type=transcript|length=1303bp
CGAACAGGGTATAGCGCATCGAGCGCGAAGAGTCATAAAGCCTGATAAAG
CGCCATATTTCTTTGGATCTCATTTGTCTGCTTGTGGACTTTTCACTGCA
AGGCcaagccaaaaaaaattaatcgattATAAGTCATGGATGGTCCTATG
TCTccaaagaaagaaaagtctGATCCTTTATCACCTGCAGTATCAACAGA
ACCAAAAAATGTGCAAGATCTCACTGTATTTgttGAAAACTTGCTGAGCA
CAATGcAAGATAAATTTCAAGCAATGTCGGATCAAATATTGACAAGAATG
GATGACATGGGTGGACGAATTGACGAACTGGAAAAGAACATAGGTGATCT
TATGCAACAAGCTGGCATCGAAGATGAACCtgctaaaaagtaaacaaaca
aaaacatttaacTAAATGGGATGGCACCACGAAACTTTACATACAGTTTT
TGTTGTTCATATTTTTATACCTAACTAAAAACGGGGAATCCTTCAATCGA
AATCTCAAGCTTAATTTGATGTTGCTTCTTTGTTGATGAGCCTTTAAATT
CGAAACATAGTCAAATAGACATTGTCGATGGATTGGGATTTTTTCTTGCC
AGTTGaaactaatagaccttttcataaattacgtcacgaacatcacttgc
ctcgttttgaaattattgccaaggtgattacctcccagtggattttatta
gaactactttctatttataaagaaatcatttgatgtctcaagggacataa
tcaccatggtaattgtttgaatacgaggcaagtgatgttcgtgacgtaat
ttatgaaaaggtctattttaggTTGTTTGAATTAATTTATTGATCctgtt
gttattttttatataaatattaTACATAATATGTAAGTAACTGATCGAAA
CATTAAATAATAGTGCCACTCTTTGACTTTTATAACAGACCCCATTATTT
GAACTTTCCGAACCACTTTTCTGCTTTgcacaatttttcaaaaacataag
GTTGAGTAAGTTCGAGTAATCTGCCGAATTTATTAACTCGAACTTTGGAT
TCCAATGTATGTTAAAAGTTCAAGTAATGTTCGAGTAAGTTGGGGTTCTA
GTAATTTGTTAACTCAAACTTTActagaattaaaatataatcaaaaggaa
atttcttatatttaagtttttaaagCTATCGGTTAGCAAATTACAGAAAC
ACTCAAAATATATTTAGCTATCTTTTCAATTGTTAATTTGGCCAATTGTA
ACTATTTTCTTTAGATATGTTTTTATGATATCGAATGAATATCTAAATCG
TAC Run BLAST on NCBI transcript from alignment at scaffold_345:195216..200885- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060603 ID=TCONS_00060603|Name=TCONS_00060603|organism=Clytia hemisphaerica|type=transcript|length=5670bp|location=Sequence derived from alignment at scaffold_345:195216..200885- (Clytia hemisphaerica)
CGAACAGGGTATAGCGCATCGAGCGCGAAGAGTCATAAAGCCTGATAAAG
CGCCATATTTCTTTGGATCTCATTTGTCTGCTTGTGGACTTTTCACTGCA
AGGCCAAGCCAAAAAAAATTAATCGATTATAAGTCATGGATGGTCCTATG
TCTCCAAAGAAAGAAAAGTCTGATCCTTTATCACCTGCAGTATCAACAGA
ACCAAAAAATGTGCAAGATCTCACTGTATTTGTAAGTTTATATACATGTT
TTATTGTGTGGCGAGGAGGTTGCAACTTAACTTTTCCATTTCTATCTTCT
ATTATTCACTTTGTTTATGTTTTTCTTTATCTTCCCACAAGCTCTAGAAT
TTCTAAAGGGCTAATCAAAGCTTGCTTGAGATCTCTATGTTCAGACAGTG
TCAATCAAACAACTTCGAACAAAAATCGCAATCGAACGTAAAATCGAACG
GTTGTGGCTTCTTCACAAAGACGAAAGACAGATCTGAACTATTTCGTACT
TTCCAGTCTGTTGTTCGTAGTTTTCTGACTTTCTGGTTCTTTGTGAGTTA
TTTTCTATGTCTACTAACTCACCGTAGAGTTGTTTAATATCGACATATCT
GTAGGCTGGTCTTCGAAATAAAAAATCTAACATAAACAAATACATACCAA
AGTTATCAATCAATCACTAAATTGTTCTCTCTCTCTATCCACGTCACAGA
TTGTTAATATAATATGAGAAATGTGAACNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNATAAGAATGATACCAAGAATTTCATTCAAGGT
TTGTTTTGATTATTTTACAGATCCGGTGTCGAGATTGCAAGACGTATGTC
GAGATTAGACGACTCTACGGTACTGAATGACTTACCGACAGATCACCACC
GGTGTGATTTGAACCCACTAAATGCAAAGTTCTGATATTCTGAAACCCAT
TGTCTTATCCACTGCGCCACGGATTCATGCCAGGATAGCGCTTCTGACGG
CTATTTATATTGTACAAACTGCAGACCAGACTGTATTAAGAGAAAGTCAC
AAAAGAGTGCTTGTTTCGAGCTCTAACCCTAACCCTAAAACTGATAATAA
CCCAATTCCTAGCCAATCTGATACGTAACCACACCCAAACCACACCCATA
CCCAACCCTACCAGGTTGCTTGCAGGTCCTGACACTATTCCCGTATACCG
GATCCGAAAAATAGATACATGTCTTTCGTCTTTATGAAGAAGCTTTCACC
TAATCGAACGCGATCGAATAATTGCGATTCGATTGTCAAACGTAATCAAA
TCTCAATCAAACTGTTTGAGTAAGGTTAGATTGATAGTTGACTATGTTCA
ATTCTGGTTCGATTGGTTTGATTGATTGTCAATTACCATGAGATTGGCTG
GGTAACTTGCATCAGTGGAGGCTAACATGCATAGCCCTCAAATAAATGAC
CTGACTGGTCATTAAAATACAACTACGCAGCTCCGCTCGCAGCTCTACTC
TACCATTTTTGTTTTGATTTAACTTGTATTTTAATGACCAGCTAGGTCAT
TTATTTGAGGGCTATGCATGTTAGCCTCCACTGATGCAAGTTACCTAAGC
TACCGAAGTAAGTATCACCTTTTCACCTTTCCATCCGCAATCTTGAATTG
TATGCAAAAATAGAGGAAGGAAAAAGCTGTGGTTGGATTTAGTTGGAAAG
TATGCAAAACATATGCAAGTTTACACAAAGATTAAAAAGACAACAAAGCA
TCTTATAAAGAAATATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNATTTCTTAATCCAAAAAGAAATATTTACAGA
ACAACAAAAGCCTTTTAGAAATTTGTTCTTAAAGACATAGCATATTCTGT
TTTCATGCCATTAAAAAAATTCCACAAAGGTAGAGTACACACATCAAACT
TTCAAAACACGCAAACTGAAAGCAGTAATTATGACATCACACATAATCAA
TGTTTTGATTTGATCATTTGGTGACTCTATTCCCAGGAGAATAATTTGCC
GTCAGCCGAATAAGGATTGTTTTTTTACCCTTGCTAGTGATTTTTCAGCT
TGAGTTTAATGTCTAAAAGAGATGAGGGAATATAATTATTTTTAGCTTTT
AAGACTTTTAAGAGAAGCAAATTTAATCTTTCTTCTACAATTCAAGATGG
TGGATGGAAAGGCGAAAAGGTCTATTGATTTTTCTGGTGAAAATTTCTTT
GCCACGAAAGAACGTCAACAAATTATCCCCCAACCCCCCCCCCCCCCCCC
CTAAACGTCCATTTTCCACGGCAAGTCTGAGTTTGGAAGGTTCCCCTTAC
AGCCCCTTGGATATGAAACAACCTAACCTAGGAAACACTTTGTGAAAGCT
AAAAGATTTTGTGTCTGCACCAAAAAGTGCAAAACTTCAATTTCTATCCA
TTTATTTGCATAAGACTAAAAAGCTAAAATCAAAAATATTTAACAAAAAC
TTGTCTATAAAAATAAAAAGTATATAAAAAAGGAAGTTAAGAATATTATA
CAATAATTAATAGTAATAAATAGTAAAAAAGTAGAAAATAGTAAAACATA
TTGAATAAATAGTTTATTAGTTGACTGACCCTCTGGACACGTGTTTTGAC
CCTGCTAAAGCATCAAATTGAACCATAGGGCACTAAAATTTACACCTGCA
CATTTCAATTTTATCCCACGGATATGAGCAGTTTTTCATGACTTTTCAAA
TAAATACCCCTGGACAGTAAATATATCTTCCACCATGTATATACAGTCTT
TTTCTGGGGGTGAGCTTCCTTAAATGTCTATTACCTTCATGAGACTAATT
TCGAGGAGAAATAACTGAGTGTTTTAGCAGGCAAAATTTAAGGGTTATTT
TAGGAAATGATGGAAAAACTTAATAAGATGAGTAATAACTTATTTTGGCA
AGGCAGCATTTTTGTTATTTTTGGTAAGAAATAATTTTCAAATTCACCAA
AATAGGCCAAAGGGTAATCAACATATCAAATATATATTATTTCTTTTTTA
GGTTGAAAACTTGCTGAGCACAATGGTAATTACACTTGCAAATTGATCAG
CATCTCTCTGCCATGCCTCCTTGCTACTGTTGGGAATCCATTGACTTAAA
AAAATGTCTCAATTAAAGCCTAGAATTAGTGCAATTGAATATTTGGCATG
AAATTAAGGAAATAATGCAAATTATTCCTGGTTACTTACTCAATTACTTT
TTTGCTTTTTGGCCTTTGTGTATGGCGCGCCAAAAGAGTTTTTAATACCA
ACTTTTTTTTTCGATAGCAACTTTTTTCTTGATGTCAACTTTTTTTTAGA
TATCAACTTTTTAATGTCTCTATTTACTCGCTTTCATTATTTTGCAATGT
AGAGAGAGGCTTATAATACGCATGCGCAAAAATACATTGCGCGCGTGTTT
GATCTAAAATTGTCAACAACATGCAGCTCTTGATGCTCTACGGATTCCAT
GCATGCGCTTCCGCACCATCTCCTTCGTTCTTGTATTTTATTAAGGGTCC
CTTTACACTAATGGTTCTCATCGAGGCAAAAGTTTGTATTGTACAACTTT
GGTATTATAATAAAAATGTTGGTGTTAAAAAAAAGTTGGTATTAAAAAAA
AAAGTTGGTATTAAAAAAAAAGTTGGTATCGAAAATAAAAAGTTGGTATT
GAAAAAAAAAGTTGGTGTCGAAAGAAAAATTTGGTATTGAAAAAAAAGTT
GTCATATAAACCTTTTTGGCGCGCCATATTTGTGCAGCTTCTTTTTATAC
ATTTCTTTGCTCACAAATATTTTATGGATTATTTCTATTTTGTTTCATTT
TAGCAAGATAAATTTCAAGCAATGTCGGATCAAATATTGACAAGAAATAT
CCTTTTCATCATTTTGCTTCTACTTACAACGTCGTAAAATCATGACTTCT
TCTAGAGTTTTAAAACATCTGGGGAAGAATGTCCCTGGTTATTCCCCAAA
GCACACCCTTTTTAAAATTCCCTTTTTTGATGGCATATCTTTGACCAATT
AAACACTTCCAGCAGATAAAGTATTTTTCTACTTTAAAGAAGTGGTCTGG
CAACAAACTTTTCTTCGACACCCTGTATTTGTGTTAAGATTAAGTTAGTG
TTTTTGCGGGGTCATAAATATATTTTGTCAAAATTGAAGAATGGTAGTTT
CAAAAGCTAAATAGAAGATCTAATCGGAATAGTGAATAAGAAGGAAAATA
TTGAAATATATGTTTATGTAAAACCAATCTAAAAGTCACATGTTTTCTTT
AACTGATATGTTTACTGGATGACATGGGTGGACGAATTGACGAACTGGAA
AAGAACATAGGTGATCTTATGCAACAAGCTGGCATCGAAGATGAACCTGC
TAAAAAGTAAACAAACAAAAACATTTAACTAAATGGGATGGCACCACGAA
ACTTTACATACAGTTTTTGTTGTTCATATTTTTATACCTAACTAAAAACG
GGGAATCCTTCAATCGAAATCTCAAGCTTAATTTGATGTTGCTTCTTTGT
TGATGAGCCTTTAAATTCGAAACATAGTCAAATAGACATTGTCGATGGAT
TGGGATTTTTTCTTGCCAGTTGAAACTAATAGACCTTTTCATAAATTACG
TCACGAACATCACTTGCCTCGTTTTGAAATTATTGCCAAGGTGATTACCT
CCCAGTGGATTTTATTAGAACTACTTTCTATTTATAAAGAAATCATTTGA
TGTCTCAAGGGACATAATCACCATGGTAATTGTTTGAATACGAGGCAAGT
GATGTTCGTGACGTAATTTATGAAAAGGTCTATTTTAGGTTGTTTGAATT
AATTTATTGATCCTGTTGTTATTTTTTATATAAATATTATACATAATATG
TAAGTAACTGATCGAAACATTAAATAATAGTGCCACTCTTTGACTTTTAT
AACAGACCCCATTATTTGAACTTTCCGAACCACTTTTCTGCTTTGCACAA
TTTTTCAAAAACATAAGGTTGAGTAAGTTCGAGTAATCTGCCGAATTTAT
TAACTCGAACTTTGGATTCCAATGTATGTTAAAAGTTCAAGTAATGTTCG
AGTAAGTTGGGGTTCTAGTAATTTGTTAACTCAAACTTTACTAGAATTAA
AATATAATCAAAAGGAAATTTCTTATATTTAAGTTTTTAAAGCTATCGGT
TAGCAAATTACAGAAACACTCAAAATATATTTAGCTATCTTTTCAATTGT
TAATTTGGCCAATTGTAACTATTTTCTTTAGATATGTTTTTATGATATCG
AATGAATATCTAAATCGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060603-exon-scaffold_345-1575043694:200655..200885 | TCONS_00060603-exon-scaffold_345-1575043694:200655..200885 | Clytia hemisphaerica | exon |
| TCONS_00060603-exon-scaffold_345-1575043694:197461..197484 | TCONS_00060603-exon-scaffold_345-1575043694:197461..197484 | Clytia hemisphaerica | exon |
| TCONS_00060603-exon-scaffold_345-1575043694:196640..196682 | TCONS_00060603-exon-scaffold_345-1575043694:196640..196682 | Clytia hemisphaerica | exon |
| TCONS_00060603-exon-scaffold_345-1575043694:195216..196220 | TCONS_00060603-exon-scaffold_345-1575043694:195216..196220 | Clytia hemisphaerica | exon |
| TCONS_00060603-exon-scaffold_345-1510915933:200655..200885 | TCONS_00060603-exon-scaffold_345-1510915933:200655..200885 | Clytia hemisphaerica | exon |
| TCONS_00060603-exon-scaffold_345-1510915933:197461..197484 | TCONS_00060603-exon-scaffold_345-1510915933:197461..197484 | Clytia hemisphaerica | exon |
| TCONS_00060603-exon-scaffold_345-1510915933:196640..196682 | TCONS_00060603-exon-scaffold_345-1510915933:196640..196682 | Clytia hemisphaerica | exon |
| TCONS_00060603-exon-scaffold_345-1510915933:195216..196220 | TCONS_00060603-exon-scaffold_345-1510915933:195216..196220 | Clytia hemisphaerica | exon |
| TCONS_00060603-exon-scaffold_345-1491911889:200655..200885 | TCONS_00060603-exon-scaffold_345-1491911889:200655..200885 | Clytia hemisphaerica | exon |
| TCONS_00060603-exon-scaffold_345-1491911889:197461..197484 | TCONS_00060603-exon-scaffold_345-1491911889:197461..197484 | Clytia hemisphaerica | exon |
| TCONS_00060603-exon-scaffold_345-1491911889:196640..196682 | TCONS_00060603-exon-scaffold_345-1491911889:196640..196682 | Clytia hemisphaerica | exon |
| TCONS_00060603-exon-scaffold_345-1491911889:195216..196220 | TCONS_00060603-exon-scaffold_345-1491911889:195216..196220 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_345 | supercontig | scaffold_345:195216..200885 - |
Blast
BLAST of TCONS_00060603 vs. Swiss-Prot (Human)
Match: HSBP1 (Heat shock factor-binding protein 1 OS=Homo sapiens GN=HSBP1 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.071e-20 Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 1
Query: 196 TEPKNVQDLTVFVENLLSTMQDKFQAMSDQILTRMDDMGGRIDELEKNIGDLMQQAGIED 375
T+PK VQDLT V+ LL MQDKFQ MSDQI+ R+DDM RID+LEKNI DLM QAG+E+
Sbjct: 4 TDPKTVQDLTSVVQTLLQQMQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVEE 63
The following BLAST results are available for this feature:
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