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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060595 ID=TCONS_00060595|Name=TCONS_00060595|organism=Clytia hemisphaerica|type=transcript|length=349bp
AGCggaaaaataaaactaaaaagcaaaaacaaaatatgtAAGACAAGTGA
ACAAAGAGATGACTTGGATGTTGTTGCACCTGGTGATTGGTTGAAGTCGG
TGGTGAATAGGGGTCTGGTGACAACAATGAACTCGTTACCAGGTTTCCGT
GGCAACAGTTTTCCAGTACGAAAAGTCATTGGTGCCCATATTGACGAGCA
TTCAAAGACATTTTACCAAGTCGAATGGGAGCCTAGTTGGGAACCggctg
aaaatttgaaaggcTGTGAAACTCTTATTCAAGACTTTTGGGTACGAAAC
AACCCCATTGCTCGAGTGAAACAGGAACCAGTGGACCAAATCTCGACAG Run BLAST on NCBI protein sequence of TCONS_00060595-protein >TCONS_00060595-protein ID=TCONS_00060595-protein|Name=TCONS_00060595-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
SGKIKLKSKNKICKTSEQRDDLDVVAPGDWLKSVVNRGLVTTMNSLPGFR
GNSFPVRKVIGAHIDEHSKTFYQVEWEPSWEPAENLKGCETLIQDFWVRN
NPIARVKQEPVDQIST Run BLAST on NCBI transcript from alignment at scaffold_345:120579..121521- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060595 ID=TCONS_00060595|Name=TCONS_00060595|organism=Clytia hemisphaerica|type=transcript|length=943bp|location=Sequence derived from alignment at scaffold_345:120579..121521- (Clytia hemisphaerica)
AGCGGAAAAATAAAACTAAAAAGCAAAAACAAAATATGTAAGACAAGTGA
ACAAAGAGATGACTTGGATGTTGTTGCACCTGGTGATTGGTTGAAGTCGG
TGGTGAATAGGGGTCTGGTGACAACAATGAACTCGTTACCAGGTTTCCGT
GGCAACAGTTTTCCAGTACGAAAAGTCATTGGTGCCCATATTGACGAGGT
TTAGTATGCTTTATTCGTTAATACTTTTTTTGTTATTAGAACACAATTTT
ACAAGAATAACATGCTGAAATTTGGCTAAAAACCTTATATTGAATTTAGA
ACAATTTTAAGCCACAAATGTCAGAAATTGCTAAGAAACTTGTCACTATA
TTGTAAGCCCGTTACCCGTCCTTCAATAAGAAAACCACAAGTTTAACCTT
ATAAGGGAACTAATCTTCGTGGTGCGATGGTACTAAATTGGCGCATTTTT
CGGAACTAATTTTCGTGGTAGACACTCAAAAAAGACAATATAGGTAGGAA
TATTTAACATCTCTATCCAAGCAGTAAACTAAATATTCAATTTGTTTAAT
TTCAGCATTCAAAGACATTTTACCAAGTCGAATGGGAGCCTAGTTGGGAA
CCGGCTGAAAATTTGAAAGGCTGTGAAACTCTTATTCAAGACTTTTGGGT
ACGAAACAACCCCATTGCTCGAGTGAAACAGGTAAAAATTACACGGTCCA
CATTTTGGAATTTTTCATAAACTTATACCAAATTGAATCATTTTTCGATC
TCGCGTAACTTGTTTATCGATTTTTTTCTCGGAAGAAATGACTTGATTTG
TCAAAAATAATATTGTTGCCGAGATCGACCAATAGCTTCACTTCTTTCTC
GTATGATTTGTATCGATAATGCATGATCTTCCATAGAAAACTAATGAACT
ATTTTCTCAATTTTTAAGGAACCAGTGGACCAAATCTCGACAG Coding sequence (CDS) from alignment at scaffold_345:120579..121521- >TCONS_00060595 ID=TCONS_00060595|Name=TCONS_00060595|organism=Clytia hemisphaerica|type=CDS|length=1044bp|location=Sequence derived from alignment at scaffold_345:120579..121521- (Clytia hemisphaerica)
GAACCAGTGGACCAAATCTCGACACATTCAAAGACATTTTACCAAGTCGA
ATGGGAGCCTAGTTGGGAACCGGCTGAAAATTTGAAAGGCTGTGAAACTC
TTATTCAAGACTTTTGGGTACGAAACAACCCCATTGCTCGAGTGAAACAG
AGCGGAAAAATAAAACTAAAAAGCAAAAACAAAATATGTAAGACAAGTGA
ACAAAGAGATGACTTGGATGTTGTTGCACCTGGTGATTGGTTGAAGTCGG
TGGTGAATAGGGGTCTGGTGACAACAATGAACTCGTTACCAGGTTTCCGT
GGCAACAGTTTTCCAGTACGAAAAGTCATTGGTGCCCATATTGACGAGGA
ACCAGTGGACCAAATCTCGACACATTCAAAGACATTTTACCAAGTCGAAT
GGGAGCCTAGTTGGGAACCGGCTGAAAATTTGAAAGGCTGTGAAACTCTT
ATTCAAGACTTTTGGGTACGAAACAACCCCATTGCTCGAGTGAAACAGAG
CGGAAAAATAAAACTAAAAAGCAAAAACAAAATATGTAAGACAAGTGAAC
AAAGAGATGACTTGGATGTTGTTGCACCTGGTGATTGGTTGAAGTCGGTG
GTGAATAGGGGTCTGGTGACAACAATGAACTCGTTACCAGGTTTCCGTGG
CAACAGTTTTCCAGTACGAAAAGTCATTGGTGCCCATATTGACGAGGAAC
CAGTGGACCAAATCTCGACACATTCAAAGACATTTTACCAAGTCGAATGG
GAGCCTAGTTGGGAACCGGCTGAAAATTTGAAAGGCTGTGAAACTCTTAT
TCAAGACTTTTGGGTACGAAACAACCCCATTGCTCGAGTGAAACAGAGCG
GAAAAATAAAACTAAAAAGCAAAAACAAAATATGTAAGACAAGTGAACAA
AGAGATGACTTGGATGTTGTTGCACCTGGTGATTGGTTGAAGTCGGTGGT
GAATAGGGGTCTGGTGACAACAATGAACTCGTTACCAGGTTTCCGTGGCA
ACAGTTTTCCAGTACGAAAAGTCATTGGTGCCCATATTGACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060595-exon-scaffold_345-1575043694:121324..121521 | TCONS_00060595-exon-scaffold_345-1575043694:121324..121521 | Clytia hemisphaerica | exon |
| TCONS_00060595-exon-scaffold_345-1575043694:120841..120966 | TCONS_00060595-exon-scaffold_345-1575043694:120841..120966 | Clytia hemisphaerica | exon |
| TCONS_00060595-exon-scaffold_345-1575043694:120579..120603 | TCONS_00060595-exon-scaffold_345-1575043694:120579..120603 | Clytia hemisphaerica | exon |
| TCONS_00060595-exon-scaffold_345-1510915933:121324..121521 | TCONS_00060595-exon-scaffold_345-1510915933:121324..121521 | Clytia hemisphaerica | exon |
| TCONS_00060595-exon-scaffold_345-1510915933:120841..120966 | TCONS_00060595-exon-scaffold_345-1510915933:120841..120966 | Clytia hemisphaerica | exon |
| TCONS_00060595-exon-scaffold_345-1510915933:120579..120603 | TCONS_00060595-exon-scaffold_345-1510915933:120579..120603 | Clytia hemisphaerica | exon |
| TCONS_00060595-exon-scaffold_345-1491911889:121324..121521 | TCONS_00060595-exon-scaffold_345-1491911889:121324..121521 | Clytia hemisphaerica | exon |
| TCONS_00060595-exon-scaffold_345-1491911889:120841..120966 | TCONS_00060595-exon-scaffold_345-1491911889:120841..120966 | Clytia hemisphaerica | exon |
| TCONS_00060595-exon-scaffold_345-1491911889:120579..120603 | TCONS_00060595-exon-scaffold_345-1491911889:120579..120603 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_345 | supercontig | scaffold_345:120579..121521 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR016197 | Chromodomain-like |
Blast
The following BLAST results are available for this feature:
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