|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060593 ID=TCONS_00060593|Name=TCONS_00060593|organism=Clytia hemisphaerica|type=transcript|length=3344bp
ACTCACACTGGATTTTCAACCTAATTTTaatgaccaccctggattttttt
attttccagaccttCCTGGAcctcacacctcctcaacaaaaGGGttttca
agtGAGAGAGGTTCAATATCAGAAGACACAGCTTCGACATCCATGAAGTC
ATTTTTAAATGATAGAGTCTTACCACCAATGAATCTAATTTCTgataaac
aacaacaaaaacaagagGAGCGGACGTCGACGTCGTCCGACAATTCACGT
AATTTGCGCCCGTTTTCCTGCCACGTTTGTAGTTTCCGTGCGTGCGAGAA
ATACAATCTTTTACGTCACTACGACAACAGGCATTCGTTACGTAAACGTG
ACGTCAATATCGTGTATCCGTGTCCTGTGTGTCAACGCACGTTCAAAGGG
AAAACGTACTTGATAACTCATCTTGAAACTCATGCTGAGTCAATCTCAAA
ACCCTACCGTTGCTCTATTTGTCAGGCGTCGTATGACAATGTGACGGATC
TGGAACGTCATCATTTGTCTCACGAATTTGATCTGACCACGGACCCAGGT
GAGGAGGATCAGGATGACGGTAAACCGAAAGAACGAACCTCTTTACTTCA
ATGTCAAAAATGCTCTCTTGGTTTCGATTCACTAGAATCTTTACAGCGTC
ACCAAAGACGCCATATTGAAACAATCGGCACCGGTACATCGGCCGTAACG
ACGGTAGCGACGTCAACGAACCAAGCATTTACTTTCAAACCGCCGACGAA
AAAGCCGAAAAAGAATGGGAATATTAAAGGACTCAAAAGAAAAcccatca
aagaaaacaaagccGAACGAAAACACGATAAAGCGAAATTTAGAAAACGT
CTCACAACAGGCCCAGAATTTTTAAATTGTCCATATTGTTCTAGTcaatt
ctcaaataaaaacttcAACGGAATTACGAACTTAAACATTCACTTACTAT
TAAAACACAAGAACACGATCAAAGCGAAACCTCGTACTCACCTTCACAAA
TGTCCGAAATGTGTCAAATTGTTTACGTCCCAGACCTCTTTAGATGTGCA
TTTACAGAAAAAACATGGTATTGAGTCTGACGAAAGCGCTCAAGGTAAGC
AAAAATCGCCGAGAAAGCGAAAAGAAATATCTGAAAGTGAGGTAAAACAA
GACCTAGGAGAAGAACATCAGTCCGCCGTCTCCACGAACATCATTAAAGG
TGAAAGTGTGAATAAAAGTACTGTGAATTCTAATAATAAAACTGATCGAA
AAGCTAGACTGCGGAAACGTCTCGCAAAGAAACGATCCCAACTCAAATCC
AAAATCATCGTTACGAGAACCCGCTCACAAAGCCCCGTTAAAGCTGCCTC
GTCCTCATCAAACGGTGATGACGTGCCGAAAACATCGAAATTCAATAAAC
GGCGAGATGGCGGTGCGTCAAATACGTCACAATCGGGTTCTGTATTCCGT
AGAAAGGGACGTCCGCCGGGTATCGGGAAAGTCATTGCCGGTAGAATCTT
GAAGAAGTACCGATGTCCGCATTGTCACTTGACCTATATCCATCAACCGA
GTTTCATTAATCACCAACGTACTTGTAAATCCTTGAAAGCTACCGCTCTT
CAGTTGACCAATAAAAGACTCATGAAATCATAGATTGAAAATTATTAGGT
TTGGGCGTAAAATCTGAGAGTCCTCTTGCGCCTTTGGTTGTGTCGGTGTC
AACCCTCCATGGATTCCAGCCATTCCAGCCCTTGAAactctcttaattat
atttttctttttctttgttaataatTATTTGTCTAGTATTTATCTAACCG
ACTAGTCTCGAATCAAGACAATATCCATCACTGAATCTTCCAGGCTAGGC
GATCTTCGAAAATGACATGACAAGCGATCTAgctatgaaaattttgattc
aagAAATGCACCAAAGCCGCAAGTCATTTTCAAAACTATTCCGGGCGTTC
ATTAATCCTCATAGttgggtcgtttagcataatttacaggaaaaaaaaat
tttcgacctGAAACTTTCTctagaccttctctataggatgcttatgtcTC
AGAAAAAATCCCCTATAATCCCACTGGTGATCCTTCTCAAGATAATTCAC
ACAGAAGATGCAATTTATGGCCAATTTCAgacaaaatgtggcgaaaattG
GAACTTGCGCGTGAAATATCTAAGGAAATCGGCTATGACCGTTTGAAGGT
CTTCTAtgtagtttttcgagagctttcgaatggtatacatgatattgtct
gaaaataaggtttgaaattttcaaaaaatttcgcccttagggttttgcct
gggggaaatagaaattgcccaaaaaagggatgttccaccagtgggatttt
agggcaTTTTTTCCTGAGGCTTAAGCATCCcgtagagaaggtctggagaa
agtttcagctagatattatttttttcctacaaacagccttgtatttttgt
aacacgaccataCTATCATTTTTTGCCAAGGATAAAATCAttcagtttgt
ttttttctccccagaaatttttcacaattttagaatttataCTATAGAAA
TGTttacttatttttttagaattgagttattttaaagtataattttttat
GCCATAATATTGTATTATgttttttaagtcatttttttcaattttcgatg
attattttgttttcattattgGTTTTGATTTTCTGTCTGTGCATATATGA
GAATATATAGTTTTATCAATATAGTTTTTCTATTATATTTTAGGCCGTAG
GTAACTCGAGGCCCGCATATTTTCGCTATTTCTTTACAGATACACTTTTC
CCTCaagaattgttttcaaaaattggataTTTGGTCCTTAAGTAATATCA
TTTTTGATAGTTCATATTTTGAAGACATTTCTCTCTCTGGtataaatctt
tttcaagcGTGTAgtgtagtgcagtggtagagcatccggctacggttccc
atccgggtcataccaaagattctcaaaatggtacttgatgcctctctgct
tgatgctcagcaattaagagaaggatcaagggtcaGTGGAGCAAACAAGG
GAGAAAGTGTGGCGCCCTCCCTTACCTTCGGATAGATAGCTTTTGATAGA
GTagtcttcgggtcgcctccgactgcggtcgcagacttaaactttttcaa
ttGTGTTTTTCAGCACTAATCAGGAGAACATTTGAAAAAGTGTGAAATCC
ATTAAACTGTAAATCAAAAGTGGTATTATCACTCTCTCTCTAGATTACCC
AAAATGCATTTGTAGGAAATATTATaatctttaatttttctttttaagcg
ATTAGTTTCCTTTATAATATTATATCACAAATTATGAATTGAAT Run BLAST on NCBI transcript from alignment at scaffold_345:112653..117462- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060593 ID=TCONS_00060593|Name=TCONS_00060593|organism=Clytia hemisphaerica|type=transcript|length=4810bp|location=Sequence derived from alignment at scaffold_345:112653..117462- (Clytia hemisphaerica)
ACTCACACTGGATTTTCAACCTAATTTTAATGACCACCCTGGATTTTTTT
ATTTTCCAGACCTTCCTGGACCTCACACCTCCTCAACAAAAGGGGTGAAG
ACTATTTCTGGAATAGCCCATTATCATACTCGTCTTACTGTAATACCCGG
ATTATTAAACGACACAAGTCTATGTTGATCGTTAGAGTGATTGTAAAAGT
TTTGTGCTTTGGAACCCCCGTTCGTGATTGCAAAATTCTTACTTACTACA
CACACTACACACGAAAATACTGTCCCTTCTATGTACTTTACGTCCCTGAA
TACCTCTAGAAAGTTAATCATTCTTTTTGCCTTTGATTTATCGAGCTTTT
TTAAAAAGTACACACACATAAGTAGTTGTGGTCTCTTGTGATCAGTACTC
TTACGCCCACGCATGCATACACGCTTTTTTTTATAAGAATATCTTTCTAT
AAGAATATCAGGGTGAAAATTGGCCAAATCGTAAGAATACCCTCTAGGGT
GAATTCCACAGAATTTGATAAGAATACAGTCATTTTGTATTCGGTTAATA
GAAAAAACTGCTTCCTTTGTTAGAGATAAATTGAAGCTTTGAGAAAGAAA
TGTAATTTTAACCCAAATGTTCACTCTAAATTCCAAAACTCTCAAATTGA
TCATTTCTCATGTTTGTAAAAAAGTCAAGTCTAAAACAGTAAGAAAAGGT
TAAGAATATCTCATCCACAATTTTGGCACTTTCTTAAGAATACTTGACCC
TCATCCAAAGTACACTATTCTTATAAAAAAAAGCGTGTAACACACAAACG
ATTAAGTGACCGCTCATTTCAGCTTTCCTATAGAAACCAGTCTAATAATT
AATGATTTACTTGCATCTGTAACATTACACTCTCTATTTTTTAAAGTTTT
CAAGTGAGAGAGGTTCAATATCAGAAGACACAGCTTCGACATCCATGAAG
TCATTTTTAAATGATAGAGGTTTGACTGATTGATTTTAATGATATAGAGA
ATATAAAAATGCTAGCTTTAATTTTATCTAACACTCGCAGGGAACCTAAA
TGAAGGGAAAATAATCTCTCATTTTTTAACAAGGGAAAGAACAACTCCCA
CCACCTTAGCTTTCCAAAAATGTATAACAAGTGCTTTGACTAAAAAAATC
GAGTGATTTTACAAATTTCCCCCTACTACAAGGGAAAGAACAACTCCCGC
CACCACAAATTTTGAGAAATTCTCTTATTTTTTCTGCTTTCTCAGTGTAA
AGGAGTGCCTCTTTTTATATCTTTTAAATTCGTTAGAGTAGCCTTTTTAA
TGAAATGCTTTTCATGTGTTTTTTCTTTGTTCTAGATCAAAGATTTCTTT
GTTTTCTCCCACTTTTCTGATATTTTCTTGTTTCTATAATGGGCTTTTCC
AGAAAAAATTTGAATATGGGGGGTGGAGGATATAACAATATTCAGTGATT
TACCCCCCGGACAAGCATCAGTTGACCCCCCGGACAACCCAAATTACCCC
TGAACAGAGCAAATTTAAACCCCCCTCCCCCGGACAAGGCAAATTTTGAT
TATTTTTCGCTACCCCCAGACAATATACTCGACCCCCATGTACGGACATT
TTCTGGAAGAGTCCAATCTCCTTGTATTTTCAGTCTTACCACCAATGAAT
CTAATTTCTGATAAACAACAACAAAAACAAGAGGAGCGGACGTCGACGTC
GTCCGACAATTCACGTAATTTGCGCCCGTTTTCCTGCCACGTTTGTAGTT
TCCGTGCGTGCGAGAAATACAATCTTTTACGTCACTACGACAACAGGCAT
TCGTTACGTAAACGTGACGTCAATATCGTGTATCCGTGTCCTGTGTGTCA
ACGCACGTTCAAAGGGAAAACGTACTTGATAACTCATCTTGAAACTCATG
CTGAGTCAATCTCAAAACCCTACCGTTGCTCTATTTGTCAGGCGTCGTAT
GACAATGTGACGGATCTGGAACGTCATCATTTGTCTCACGAATTTGATCT
GACCACGGACCCAGGTGAGGAGGATCAGGATGACGGTAAACCGAAAGAAC
GAACCTCTTTACTTCAATGTCAAAAATGCTCTCTTGGTTTCGATTCACTA
GAATCTTTACAGCGTCACCAAAGACGCCATATTGAAACAATCGGCACCGG
TACATCGGCCGTAACGACGGTAGCGACGTCAACGAACCAAGCATTTACTT
TCAAACCGCCGACGAAAAAGCCGAAAAAGAATGGGAATATTAAAGGACTC
AAAAGAAAACCCATCAAAGAAAACAAAGCCGAACGAAAACACGATAAAGC
GAAATTTAGAAAACGTCTCACAACAGGCCCAGAATTTTTAAATTGTCCAT
ATTGTTCTAGTCAATTCTCAAATAAAAACTTCAACGGAATTACGAACTTA
AACATTCACTTACTATTAAAACACAAGAACACGATCAAAGCGAAACCTCG
TACTCACCTTCACAAATGTCCGAAATGTGTCAAATTGTTTACGTCCCAGA
CCTCTTTAGATGTGCATTTACAGAAAAAACATGGTATTGAGTCTGACGAA
AGCGCTCAAGGTAAGCAAAAATCGCCGAGAAAGCGAAAAGAAATATCTGA
AAGTGAGGTAAAACAAGACCTAGGAGAAGAACATCAGTCCGCCGTCTCCA
CGAACATCATTAAAGGTGAAAGTGTGAATAAAAGTACTGTGAATTCTAAT
AATAAAACTGATCGAAAAGCTAGACTGCGGAAACGTCTCGCAAAGAAACG
ATCCCAACTCAAATCCAAAATCATCGTTACGAGAACCCGCTCACAAAGCC
CCGTTAAAGCTGCCTCGTCCTCATCAAACGGTGATGACGTGCCGAAAACA
TCGAAATTCAATAAACGGCGAGATGGCGGTGCGTCAAATACGTCACAATC
GGGTTCTGTATTCCGTAGAAAGGGACGTCCGCCGGGTATCGGGAAAGTCA
TTGCCGGTAGAATCTTGAAGAAGTACCGATGTCCGCATTGTCACTTGACC
TATATCCATCAACCGAGTTTCATTAATCACCAACGTACTTGTAAATCCTT
GAAAGCTACCGCTCTTCAGTTGACCAATAAAAGACTCATGAAATCATAGA
TTGAAAATTATTAGGTTTGGGCGTAAAATCTGAGAGTCCTCTTGCGCCTT
TGGTTGTGTCGGTGTCAACCCTCCATGGATTCCAGCCATTCCAGCCCTTG
AAACTCTCTTAATTATATTTTTCTTTTTCTTTGTTAATAATTATTTGTCT
AGTATTTATCTAACCGACTAGTCTCGAATCAAGACAATATCCATCACTGA
ATCTTCCAGGCTAGGCGATCTTCGAAAATGACATGACAAGCGATCTAGCT
ATGAAAATTTTGATTCAAGAAATGCACCAAAGCCGCAAGTCATTTTCAAA
ACTATTCCGGGCGTTCATTAATCCTCATAGTTGGGTCGTTTAGCATAATT
TACAGGAAAAAAAAATTTTCGACCTGAAACTTTCTCTAGACCTTCTCTAT
AGGATGCTTATGTCTCAGAAAAAATCCCCTATAATCCCACTGGTGATCCT
TCTCAAGATAATTCACACAGAAGATGCAATTTATGGCCAATTTCAGACAA
AATGTGGCGAAAATTGGAACTTGCGCGTGAAATATCTAAGGAAATCGGCT
ATGACCGTTTGAAGGTCTTCTATGTAGTTTTTCGAGAGCTTTCGAATGGT
ATACATGATATTGTCTGAAAATAAGGTTTGAAATTTTCAAAAAATTTCGC
CCTTAGGGTTTTGCCTGGGGGAAATAGAAATTGCCCAAAAAAGGGATGTT
CCACCAGTGGGATTTTAGGGCATTTTTTCCTGAGGCTTAAGCATCCCGTA
GAGAAGGTCTGGAGAAAGTTTCAGCTAGATATTATTTTTTTCCTACAAAC
AGCCTTGTATTTTTGTAACACGACCATACTATCATTTTTTGCCAAGGATA
AAATCATTCAGTTTGTTTTTTTCTCCCCAGAAATTTTTCACAATTTTAGA
ATTTATACTATAGAAATGTTTACTTATTTTTTTAGAATTGAGTTATTTTA
AAGTATAATTTTTTATGCCATAATATTGTATTATGTTTTTTAAGTCATTT
TTTTCAATTTTCGATGATTATTTTGTTTTCATTATTGGTTTTGATTTTCT
GTCTGTGCATATATGAGAATATATAGTTTTATCAATATAGTTTTTCTATT
ATATTTTAGGCCGTAGGTAACTCGAGGCCCGCATATTTTCGCTATTTCTT
TACAGATACACTTTTCCCTCAAGAATTGTTTTCAAAAATTGGATATTTGG
TCCTTAAGTAATATCATTTTTGATAGTTCATATTTTGAAGACATTTCTCT
CTCTGGTATAAATCTTTTTCAAGCGTGTAGTGTAGTGCAGTGGTAGAGCA
TCCGGCTACGGTTCCCATCCGGGTCATACCAAAGATTCTCAAAATGGTAC
TTGATGCCTCTCTGCTTGATGCTCAGCAATTAAGAGAAGGATCAAGGGTC
AGTGGAGCAAACAAGGGAGAAAGTGTGGCGCCCTCCCTTACCTTCGGATA
GATAGCTTTTGATAGAGTAGTCTTCGGGTCGCCTCCGACTGCGGTCGCAG
ACTTAAACTTTTTCAATTGTGTTTTTCAGCACTAATCAGGAGAACATTTG
AAAAAGTGTGAAATCCATTAAACTGTAAATCAAAAGTGGTATTATCACTC
TCTCTCTAGATTACCCAAAATGCATTTGTAGGAAATATTATAATCTTTAA
TTTTTCTTTTTAAGCGATTAGTTTCCTTTATAATATTATATCACAAATTA
TGAATTGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060593-exon-scaffold_345-1575043694:117369..117462 | TCONS_00060593-exon-scaffold_345-1575043694:117369..117462 | Clytia hemisphaerica | exon |
| TCONS_00060593-exon-scaffold_345-1575043694:116494..116566 | TCONS_00060593-exon-scaffold_345-1575043694:116494..116566 | Clytia hemisphaerica | exon |
| TCONS_00060593-exon-scaffold_345-1575043694:112653..115829 | TCONS_00060593-exon-scaffold_345-1575043694:112653..115829 | Clytia hemisphaerica | exon |
| TCONS_00060593-exon-scaffold_345-1510915933:117369..117462 | TCONS_00060593-exon-scaffold_345-1510915933:117369..117462 | Clytia hemisphaerica | exon |
| TCONS_00060593-exon-scaffold_345-1510915933:116494..116566 | TCONS_00060593-exon-scaffold_345-1510915933:116494..116566 | Clytia hemisphaerica | exon |
| TCONS_00060593-exon-scaffold_345-1510915933:112653..115829 | TCONS_00060593-exon-scaffold_345-1510915933:112653..115829 | Clytia hemisphaerica | exon |
| TCONS_00060593-exon-scaffold_345-1491911889:117369..117462 | TCONS_00060593-exon-scaffold_345-1491911889:117369..117462 | Clytia hemisphaerica | exon |
| TCONS_00060593-exon-scaffold_345-1491911889:116494..116566 | TCONS_00060593-exon-scaffold_345-1491911889:116494..116566 | Clytia hemisphaerica | exon |
| TCONS_00060593-exon-scaffold_345-1491911889:112653..115829 | TCONS_00060593-exon-scaffold_345-1491911889:112653..115829 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_345 | supercontig | scaffold_345:112653..117462 - |
Blast
The following BLAST results are available for this feature:
|
