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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060587 ID=TCONS_00060587|Name=TCONS_00060587|organism=Clytia hemisphaerica|type=transcript|length=2727bpRun BLAST on NCBI protein sequence of TCONS_00060587-protein >TCONS_00060587-protein ID=TCONS_00060587-protein|Name=TCONS_00060587-protein|organism=Clytia hemisphaerica|type=polypeptide|length=376bp MGKKVAEEEGWDHEKLAKVKLKVLRGHIGGVQTCCFLDGQSLVLSGGVDKRun BLAST on NCBI transcript from alignment at scaffold_345:207802..226814+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060587 ID=TCONS_00060587|Name=TCONS_00060587|organism=Clytia hemisphaerica|type=transcript|length=19013bp|location=Sequence derived from alignment at scaffold_345:207802..226814+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_345:207802..226814+ >TCONS_00060587 ID=TCONS_00060587|Name=TCONS_00060587|organism=Clytia hemisphaerica|type=CDS|length=13572bp|location=Sequence derived from alignment at scaffold_345:207802..226814+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060587 vs. Swiss-Prot (Human)
Match: WDR88 (WD repeat-containing protein 88 OS=Homo sapiens GN=WDR88 PE=2 SV=2) HSP 1 Score: 232.261 bits (591), Expect = 1.535e-66 Identity = 129/380 (33.95%), Postives = 214/380 (56.32%), Query Frame = 3
Query: 33 KHSCAMGKKVAEEEGW-DHEKLAKVKLKVLRGHIGGVQTCCFLDGQSLVLSGGVDKTLKIWDIQDGSC-RETLIGHKAEVTCTRSTKDGRRIVSSGLDKYLIVWDGTTGQPILESRHEGMVMSCDISYDGRYMLSGTDLDNVVVIWDLRQDKSIKMLK-HHNNTVMCVRFAPSSYQFCSSGMDFTSVVCDMQNYRNERDPHAVIRLGGHINMISSCDFSGDERRLCTGSWDKTIKVWDLNSGSYRTSGP-VSLDKVHEGCVSACRFSKDGSTIMSANYDQSLIMWDADNACVNFTLQGHTGWVTDCDFSADELGVISSSKDGTIRYWDILRKDEIPVVLQNKKTIGLRLLKCHECQKQFSITQAQ-NADAIKLCVFCRLE 1157
H +V E+ W D + L+K+ K+L GH V TC F + +LSG D T+K+WD DGS R+ KA V T D R++++ DK + WD TG+ + + R++ ++SC S DG+Y++SG D+D+ + I D ++ ++K HH ++ F P S + S +D + D+ + + H N IS+C F+ LCT SWDK +K+W++++G +R G V+L + HEG VS+C F++D S ++S +D+++ +WD +L+GH WV D S ++ ++S+SKD T+R W+I DEIP+V++ KK +GL+L +C C + FSI ++ +++ CVFCR++
Sbjct: 69 PHLLPEKHQVPEKLIWGDQDPLSKIPFKILSGHEHAVSTCHFCVDDTKLLSGSYDCTVKLWDPVDGSVVRDFEHRPKAPVVECSITGDSSRVIAASYDKTVRAWDLETGKLLWKVRYDTFIVSCKFSPDGKYVVSGFDVDHGICIMDAENITTVSVIKDHHTRSITSCCFDPDSQRVASVSLDRCIKIWDVTSQAT-----LLTITKAHSNAISNCCFTFSGHFLCTSSWDKNLKIWNVHTGEFRNCGACVTLMQGHEGSVSSCHFARDSSFLISGGFDRTVAIWDVAEGYRKLSLKGHNDWVMDVAISNNKKWILSASKDRTMRLWNIEEIDEIPLVIKYKKAVGLKLKQCERCDRPFSIFKSDTSSEMFTQCVFCRID 443 The following BLAST results are available for this feature:
BLAST of TCONS_00060587 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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