TCONS_00060570 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060570
Unique NameTCONS_00060570
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1620

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060570 ID=TCONS_00060570|Name=TCONS_00060570|organism=Clytia hemisphaerica|type=transcript|length=1620bp
aaactgtTTTATTGCATAGCAtatctaaaaataaatttcgcAGAGGCGAG
ATTACCAATCGAATCTTTTTGCACTGCGAGCAACGTTTTGCACACAAGGT
CAGCATGCTTGACCATCTGTAGTCTAATGACATCATAAAACCCATCTACG
TCACTGGTTCTTATATTCTTGAGATATAATCTCCGCGCGTTATctcatta
acaattttggtTTTTGACAAGTAGAAAAGTCTTTCCCTCCTTGGTTTATA
ATGTTCTGttatcaaaaagaaagaaaattttaaaaaccgcAAAAGAAACA
AAGGATAAAGTAACAATAAGATGTCTGTATAAATATGAGCTCCCAGCGAT
GAAAGCTCCAATCATTTAGTGGTCTGTTAGTTGCTTACATAAGACGCATA
CTAACATGGGGCAGATAACAGAGACAAGAATTACTCCACAGCTGACTTAT
CAAGTCCAGGCATTTTTCCGTGCAGCTCTTAACATGAATGATACTCAGAC
AGTGAGAAAATTGTTAAAACATCAAAGAGAGGCTATCGATATTGAATTAA
CCAATCAGGAAGGAGTATTACCAATCCATTTGTGTGCGATTGAAGGAAAT
AAACCAATGATATCTATTCTACTACGCGCGGGTGCTGATATTAATGCAAT
CGATCGCCGCGGATGGACATGTTTACACGCTGCCGTTCACACAGGTAACC
TTGAACTATGTCAATATTTATTGCGTAAAGGAGCTGATCCGTTGGTTTAT
TCAACAAAACAGGAACTGCCTGTAGACTTATCTAATTATTCTGTAATTAC
ATATTTATTGGTTGAAGTTATGCAGCAGAAAGGTCAGATTGGGTTAGCGC
GTTTCCATTTATCGAGAGCTGTAGCGCAACAAAAGTACGAGGTTGCAGAA
CAACAACAAGAGGAGcagaaaaatgaagttttcaagACAAATCGAAGATA
TTCTCAACCAGCAGTTTATCGACAACATACATCACAACAATCCAGTTCGA
TTTTAAAGCGACGACCGAGTCAAATATCGGAAACTGTATCGGGAAATGAT
GAAACCCGATGTTCGTGGTCGTCAACCGTTTCGGATGAATCGGAAACAGG
AAGTGTTCGATCATCAAGTTCATCATCATCAACAAGCAGTGGACTTTCTG
TTCAATTCCCAACAAATACTTTATTTCTTAACTATGTCCACGAAAATGAG
CATGAACTTCTTGATCAGTTATTGAATGAACATAAAGTTGGTATTATCAA
CAAATTAGATCGTAAAGGTCTGAGTTCTATTCATTGGGCTGCTATGCATG
GATTTGACGAATGTATCCGTGTTTTGGTGAAACATGGTGCTAACGTTGAT
ATCGAGGACCCGAATGGGTGGACCGCCCTTCACGCCGCCGTTATTACGGA
AAAAACGGAATGTGTACGTCAATTACTGAAATGTGACTCCCGCATATACG
CCGTAACCAACAGTGGCGAAACTGTTTTCGACATGACGAAagatcaagaa
attaaaagccTATTGGAGGAGCATGTTCACTCGAACCTCAAGATGAAACT
GAAAAACAGCACGCTTTAAACTCATACTAACTTTGGTTTTTTATcattta
aaatttgatattgGTTTTCT
Run BLAST on NCBI

protein sequence of TCONS_00060570-protein

>TCONS_00060570-protein ID=TCONS_00060570-protein|Name=TCONS_00060570-protein|organism=Clytia hemisphaerica|type=polypeptide|length=387bp
MGQITETRITPQLTYQVQAFFRAALNMNDTQTVRKLLKHQREAIDIELTN
QEGVLPIHLCAIEGNKPMISILLRAGADINAIDRRGWTCLHAAVHTGNLE
LCQYLLRKGADPLVYSTKQELPVDLSNYSVITYLLVEVMQQKGQIGLARF
HLSRAVAQQKYEVAEQQQEEQKNEVFKTNRRYSQPAVYRQHTSQQSSSIL
KRRPSQISETVSGNDETRCSWSSTVSDESETGSVRSSSSSSSTSSGLSVQ
FPTNTLFLNYVHENEHELLDQLLNEHKVGIINKLDRKGLSSIHWAAMHGF
DECIRVLVKHGANVDIEDPNGWTALHAAVITEKTECVRQLLKCDSRIYAV
TNSGETVFDMTKDQEIKSLLEEHVHSNLKMKLKNSTL
Run BLAST on NCBI

transcript from alignment at scaffold_344:320167..321786

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060570 ID=TCONS_00060570|Name=TCONS_00060570|organism=Clytia hemisphaerica|type=transcript|length=1620bp|location=Sequence derived from alignment at scaffold_344:320167..321786 (Clytia hemisphaerica)
AGAAAACcaatatcaaattttaaatgATAAAAAACCAAAGTTAGTATGAG
TTTAAAGCGTGCTGTTTTTCAGTTTCATCTTGAGGTTCGAGTGAACATGC
TCCTCCAATAggcttttaatttcttgatctTTCGTCATGTCGAAAACAGT
TTCGCCACTGTTGGTTACGGCGTATATGCGGGAGTCACATTTCAGTAATT
GACGTACACATTCCGTTTTTTCCGTAATAACGGCGGCGTGAAGGGCGGTC
CACCCATTCGGGTCCTCGATATCAACGTTAGCACCATGTTTCACCAAAAC
ACGGATACATTCGTCAAATCCATGCATAGCAGCCCAATGAATAGAACTCA
GACCTTTACGATCTAATTTGTTGATAATACCAACTTTATGTTCATTCAAT
AACTGATCAAGAAGTTCATGCTCATTTTCGTGGACATAGTTAAGAAATAA
AGTATTTGTTGGGAATTGAACAGAAAGTCCACTGCTTGTTGATGATGATG
AACTTGATGATCGAACACTTCCTGTTTCCGATTCATCCGAAACGGTTGAC
GACCACGAACATCGGGTTTCATCATTTCCCGATACAGTTTCCGATATTTG
ACTCGGTCGTCGCTTTAAAATCGAACTGGATTGTTGTGATGTATGTTGTC
GATAAACTGCTGGTTGAGAATATCTTCGATTTGTcttgaaaacttcattt
ttctgCTCCTCTTGTTGTTGTTCTGCAACCTCGTACTTTTGTTGCGCTAC
AGCTCTCGATAAATGGAAACGCGCTAACCCAATCTGACCTTTCTGCTGCA
TAACTTCAACCAATAAATATGTAATTACAGAATAATTAGATAAGTCTACA
GGCAGTTCCTGTTTTGTTGAATAAACCAACGGATCAGCTCCTTTACGCAA
TAAATATTGACATAGTTCAAGGTTACCTGTGTGAACGGCAGCGTGTAAAC
ATGTCCATCCGCGGCGATCGATTGCATTAATATCAGCACCCGCGCGTAGT
AGAATAGATATCATTGGTTTATTTCCTTCAATCGCACACAAATGGATTGG
TAATACTCCTTCCTGATTGGTTAATTCAATATCGATAGCCTCTCTTTGAT
GTTTTAACAATTTTCTCACTGTCTGAGTATCATTCATGTTAAGAGCTGCA
CGGAAAAATGCCTGGACTTGATAAGTCAGCTGTGGAGTAATTCTTGTCTC
TGTTATCTGCCCCATGTTAGTATGCGTCTTATGTAAGCAACTAACAGACC
ACTAAATGATTGGAGCTTTCATCGCTGGGAGCTCATATTTATACAGACAT
CTTATTGTTACTTTATCCTTTGTTTCTTTTgcggtttttaaaattttctt
tctttttgataaCAGAACATTATAAACCAAGGAGGGAAAGACTTTTCTAC
TTGTCAAAAaccaaaattgttaatgagATAACGCGCGGAGATTATATCTC
AAGAATATAAGAACCAGTGACGTAGATGGGTTTTATGATGTCATTAGACT
ACAGATGGTCAAGCATGCTGACCTTGTGTGCAAAACGTTGCTCGCAGTGC
AAAAAGATTCGATTGGTAATCTCGCCTCTgcgaaatttatttttagataT
GCTATGCAATAAAacagttt

Coding sequence (CDS) from alignment at scaffold_344:320167..321786

>TCONS_00060570 ID=TCONS_00060570|Name=TCONS_00060570|organism=Clytia hemisphaerica|type=CDS|length=1164bp|location=Sequence derived from alignment at scaffold_344:320167..321786 (Clytia hemisphaerica)
TTAAAGCGTGCTGTTTTTCAGTTTCATCTTGAGGTTCGAGTGAACATGCT
CCTCCAATAggcttttaatttcttgatctTTCGTCATGTCGAAAACAGTT
TCGCCACTGTTGGTTACGGCGTATATGCGGGAGTCACATTTCAGTAATTG
ACGTACACATTCCGTTTTTTCCGTAATAACGGCGGCGTGAAGGGCGGTCC
ACCCATTCGGGTCCTCGATATCAACGTTAGCACCATGTTTCACCAAAACA
CGGATACATTCGTCAAATCCATGCATAGCAGCCCAATGAATAGAACTCAG
ACCTTTACGATCTAATTTGTTGATAATACCAACTTTATGTTCATTCAATA
ACTGATCAAGAAGTTCATGCTCATTTTCGTGGACATAGTTAAGAAATAAA
GTATTTGTTGGGAATTGAACAGAAAGTCCACTGCTTGTTGATGATGATGA
ACTTGATGATCGAACACTTCCTGTTTCCGATTCATCCGAAACGGTTGACG
ACCACGAACATCGGGTTTCATCATTTCCCGATACAGTTTCCGATATTTGA
CTCGGTCGTCGCTTTAAAATCGAACTGGATTGTTGTGATGTATGTTGTCG
ATAAACTGCTGGTTGAGAATATCTTCGATTTGTcttgaaaacttcatttt
tctgCTCCTCTTGTTGTTGTTCTGCAACCTCGTACTTTTGTTGCGCTACA
GCTCTCGATAAATGGAAACGCGCTAACCCAATCTGACCTTTCTGCTGCAT
AACTTCAACCAATAAATATGTAATTACAGAATAATTAGATAAGTCTACAG
GCAGTTCCTGTTTTGTTGAATAAACCAACGGATCAGCTCCTTTACGCAAT
AAATATTGACATAGTTCAAGGTTACCTGTGTGAACGGCAGCGTGTAAACA
TGTCCATCCGCGGCGATCGATTGCATTAATATCAGCACCCGCGCGTAGTA
GAATAGATATCATTGGTTTATTTCCTTCAATCGCACACAAATGGATTGGT
AATACTCCTTCCTGATTGGTTAATTCAATATCGATAGCCTCTCTTTGATG
TTTTAACAATTTTCTCACTGTCTGAGTATCATTCATGTTAAGAGCTGCAC
GGAAAAATGCCTGGACTTGATAAGTCAGCTGTGGAGTAATTCTTGTCTCT
GTTATCTGCCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038101XLOC_038101Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060570-proteinTCONS_00060570-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060570-exon-scaffold_344-1491911889:320167..321786TCONS_00060570-exon-scaffold_344-1491911889:320167..321786Clytia hemisphaericaexon
TCONS_00060570-exon-scaffold_344-1510915933:320167..321786TCONS_00060570-exon-scaffold_344-1510915933:320167..321786Clytia hemisphaericaexon
TCONS_00060570-exon-scaffold_344-1575043694:320167..321786TCONS_00060570-exon-scaffold_344-1575043694:320167..321786Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_344supercontigscaffold_344:320167..321786 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.0605268	0.0423762	0.0524898	0.178317	0.0669822	0.334446	0.0347325	0.0285548	0.0153219	18.1958	0.599743	0	0	6.07759	7.29251	2.8541	3.53835	7.18085	5.95097	0.103431	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00060570 vs. Swiss-Prot (Human)
Match: MYPT2 (Protein phosphatase 1 regulatory subunit 12B OS=Homo sapiens GN=PPP1R12B PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.737e-17
Identity = 45/136 (33.09%), Postives = 74/136 (54.41%), Query Frame = 1 
Query:  427 RITPQLTYQVQAFFRAALNMNDTQTVRKLLKHQREAIDIELTNQEGVLPIHLCAIEGNKPMISILLRAGADINAIDRRGWTCLHAAVHTGNLELCQYLLRKGADPLVYSTKQELPVDLSNYSVITYLLVEVMQQKG 834
            R +P++ ++  A F AA +  DT  VRKLL       DI   N +G+  +H   I+ N  M+  L+   A++N  D  GWT LHAA   G L + +Y +  GA   + +++ E+P DL+    +  LL+E ++++G
Sbjct:   49 RGSPRVRFEDGAVFLAACSSGDTDEVRKLLAR---GADINTVNVDGLTALHQACIDENLDMVKFLVENRANVNQQDNEGWTPLHAAASCGYLNIAEYFINHGASVGIVNSEGEVPSDLAEEPAMKDLLLEQVKKQG 181
The following BLAST results are available for this feature:
BLAST of TCONS_00060570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MYPT22.737e-1733.09Protein phosphatase 1 regulatory subunit 12B OS=Ho... [more]
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