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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060569 ID=TCONS_00060569|Name=TCONS_00060569|organism=Clytia hemisphaerica|type=transcript|length=1372bp
GCACTGGGGTCGTGAACACCAAAATACCGAAAACTTTTCTCGGTTCACCG
TCTACATCGACAGAAAAATCCTAGTTAAAAAACTCCTATCCTAGTTATGT
GTGACACCCAaacatttcgaaacaaaaacaaaacgtacATTGAAATATAT
GTAAACTAACTTCATTTTTTCCCTTCTTTTTAGCCGAAATGGAAGCAATG
ACTGGCACCGATCATAGCTCGATCAATACCACACAAAATTTCACAAAGTA
TGACGATTCTCCTCCTATACCAATTAGTATACCCGCCATCATGCCGGGAC
ATCTACCACCCTTCCTCCCTTCAAACAAAGAAGATCAAAACAATATCACC
GAGGCGAATCAAAGGGGGCATTCAAATATGGAAAtcatcataatttttga
aggggCATTTATTGTGTTGGTGAATTTATTCTTTCTGACTTGCATATTGT
TGAAAAGAAAGACACGTCGCATGAAAGAGACAAGATTTTTGCTGAACCTT
CAATTCACACACGTGCTTGTTGGTGTCAACTCTTTTGTATACTACTCAAA
AGGCTATACCGAATCTATAATGATAGCTAATTTACTACTCCTTCAAGTAT
TTTTGGGCTTAATATGCATGACTTTGGAGCGTTTTCTATCAATAATATAT
CCATTCAAGATGAGACAGAGCAGCACTCGCTATCATTACATCTTAATATC
AATATCCTGGTTGCTGATTGGTTTATTGACTGCTCTCGGCTTGGTCTATT
TCGAGGATATAACAGGTCACCAAAACAATGACAACCacgtgtttttgatg
ttttcgACAGCATTGGTTTCAATTGCGATCTTACTCTTAGCATTTACGAA
CTTCAAACTTTTGTTGATCGCTCGTAAACATTTTAAGGAGATTGGGAAAA
CATTAGTTCGAGAGAAAACTGAAATTTGTAAACGAAATTCAAAAGCGACT
TACACGTGTATTATAATAGTGGCTAGCTTCATTATTCTATGGCTACCTCA
GCTTATTCATAATATTCTGTCGCTATTGAATATATATCAAGCTGGAAAGG
ATCGATTAATGACTCAAATCGTTTGGTTAATCGCAATGATCGATTCAATT
GTGAACCCGTTCGTTCACATGTGTTTTAATCGGGGTATTCGACAAATGGT
TAAACGAATGAGCAATCGAAAATCGACAGCTGAGCCAAACACAATAACCA
AACACAATAATGAAACAGTATCGTCTAAACATACAGTCGTATCAAAAGAT
CGAGTTAGAAGTCATATCGAGAATGTTGCTGAGTGAGCATTTTATTATAA
AGCAATTTATAGTAGTTTATTTACCGTTTACCAATTTTACCAATTTACCA
ATTTATAGTATTTTATtaaacc Run BLAST on NCBI protein sequence of TCONS_00060569-protein >TCONS_00060569-protein ID=TCONS_00060569-protein|Name=TCONS_00060569-protein|organism=Clytia hemisphaerica|type=polypeptide|length=365bp
MEAMTGTDHSSINTTQNFTKYDDSPPIPISIPAIMPGHLPPFLPSNKEDQ
NNITEANQRGHSNMEIIIIFEGAFIVLVNLFFLTCILLKRKTRRMKETRF
LLNLQFTHVLVGVNSFVYYSKGYTESIMIANLLLLQVFLGLICMTLERFL
SIIYPFKMRQSSTRYHYILISISWLLIGLLTALGLVYFEDITGHQNNDNH
VFLMFSTALVSIAILLLAFTNFKLLLIARKHFKEIGKTLVREKTEICKRN
SKATYTCIIIVASFIILWLPQLIHNILSLLNIYQAGKDRLMTQIVWLIAM
IDSIVNPFVHMCFNRGIRQMVKRMSNRKSTAEPNTITKHNNETVSSKHTV
VSKDRVRSHIENVAE Run BLAST on NCBI transcript from alignment at scaffold_344:301529..302900 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060569 ID=TCONS_00060569|Name=TCONS_00060569|organism=Clytia hemisphaerica|type=transcript|length=1372bp|location=Sequence derived from alignment at scaffold_344:301529..302900 (Clytia hemisphaerica)
ggtttaATAAAATACTATAAATTGGTAAATTGGTAAAATTGGTAAACGGT
AAATAAACTACTATAAATTGCTTTATAATAAAATGCTCACTCAGCAACAT
TCTCGATATGACTTCTAACTCGATCTTTTGATACGACTGTATGTTTAGAC
GATACTGTTTCATTATTGTGTTTGGTTATTGTGTTTGGCTCAGCTGTCGA
TTTTCGATTGCTCATTCGTTTAACCATTTGTCGAATACCCCGATTAAAAC
ACATGTGAACGAACGGGTTCACAATTGAATCGATCATTGCGATTAACCAA
ACGATTTGAGTCATTAATCGATCCTTTCCAGCTTGATATATATTCAATAG
CGACAGAATATTATGAATAAGCTGAGGTAGCCATAGAATAATGAAGCTAG
CCACTATTATAATACACGTGTAAGTCGCTTTTGAATTTCGTTTACAAATT
TCAGTTTTCTCTCGAACTAATGTTTTCCCAATCTCCTTAAAATGTTTACG
AGCGATCAACAAAAGTTTGAAGTTCGTAAATGCTAAGAGTAAGATCGCAA
TTGAAACCAATGCTGTcgaaaacatcaaaaacacgtGGTTGTCATTGTTT
TGGTGACCTGTTATATCCTCGAAATAGACCAAGCCGAGAGCAGTCAATAA
ACCAATCAGCAACCAGGATATTGATATTAAGATGTAATGATAGCGAGTGC
TGCTCTGTCTCATCTTGAATGGATATATTATTGATAGAAAACGCTCCAAA
GTCATGCATATTAAGCCCAAAAATACTTGAAGGAGTAGTAAATTAGCTAT
CATTATAGATTCGGTATAGCCTTTTGAGTAGTATACAAAAGAGTTGACAC
CAACAAGCACGTGTGTGAATTGAAGGTTCAGCAAAAATCTTGTCTCTTTC
ATGCGACGTGTCTTTCTTTTCAACAATATGCAAGTCAGAAAGAATAAATT
CACCAACACAATAAATGccccttcaaaaattatgatgaTTTCCATATTTG
AATGCCCCCTTTGATTCGCCTCGGTGATATTGTTTTGATCTTCTTTGTTT
GAAGGGAGGAAGGGTGGTAGATGTCCCGGCATGATGGCGGGTATACTAAT
TGGTATAGGAGGAGAATCGTCATACTTTGTGAAATTTTGTGTGGTATTGA
TCGAGCTATGATCGGTGCCAGTCATTGCTTCCATTTCGGCTAAAAAGAAG
GGAAAAAATGAAGTTAGTTTACATATATTTCAATgtacgttttgtttttg
tttcgaaatgttTGGGTGTCACACATAACTAGGATAGGAGTTTTTTAACT
AGGATTTTTCTGTCGATGTAGACGGTGAACCGAGAAAAGTTTTCGGTATT
TTGGTGTTCACGACCCCAGTGC Coding sequence (CDS) from alignment at scaffold_344:301529..302900 >TCONS_00060569 ID=TCONS_00060569|Name=TCONS_00060569|organism=Clytia hemisphaerica|type=CDS|length=1098bp|location=Sequence derived from alignment at scaffold_344:301529..302900 (Clytia hemisphaerica)
TCACTCAGCAACATTCTCGATATGACTTCTAACTCGATCTTTTGATACGA
CTGTATGTTTAGACGATACTGTTTCATTATTGTGTTTGGTTATTGTGTTT
GGCTCAGCTGTCGATTTTCGATTGCTCATTCGTTTAACCATTTGTCGAAT
ACCCCGATTAAAACACATGTGAACGAACGGGTTCACAATTGAATCGATCA
TTGCGATTAACCAAACGATTTGAGTCATTAATCGATCCTTTCCAGCTTGA
TATATATTCAATAGCGACAGAATATTATGAATAAGCTGAGGTAGCCATAG
AATAATGAAGCTAGCCACTATTATAATACACGTGTAAGTCGCTTTTGAAT
TTCGTTTACAAATTTCAGTTTTCTCTCGAACTAATGTTTTCCCAATCTCC
TTAAAATGTTTACGAGCGATCAACAAAAGTTTGAAGTTCGTAAATGCTAA
GAGTAAGATCGCAATTGAAACCAATGCTGTcgaaaacatcaaaaacacgt
GGTTGTCATTGTTTTGGTGACCTGTTATATCCTCGAAATAGACCAAGCCG
AGAGCAGTCAATAAACCAATCAGCAACCAGGATATTGATATTAAGATGTA
ATGATAGCGAGTGCTGCTCTGTCTCATCTTGAATGGATATATTATTGATA
GAAAACGCTCCAAAGTCATGCATATTAAGCCCAAAAATACTTGAAGGAGT
AGTAAATTAGCTATCATTATAGATTCGGTATAGCCTTTTGAGTAGTATAC
AAAAGAGTTGACACCAACAAGCACGTGTGTGAATTGAAGGTTCAGCAAAA
ATCTTGTCTCTTTCATGCGACGTGTCTTTCTTTTCAACAATATGCAAGTC
AGAAAGAATAAATTCACCAACACAATAAATGccccttcaaaaattatgat
gaTTTCCATATTTGAATGCCCCCTTTGATTCGCCTCGGTGATATTGTTTT
GATCTTCTTTGTTTGAAGGGAGGAAGGGTGGTAGATGTCCCGGCATGATG
GCGGGTATACTAATTGGTATAGGAGGAGAATCGTCATACTTTGTGAAATT
TTGTGTGGTATTGATCGAGCTATGATCGGTGCCAGTCATTGCTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060569-exon-scaffold_344-1491911889:301529..302900 | TCONS_00060569-exon-scaffold_344-1491911889:301529..302900 | Clytia hemisphaerica | exon |
| TCONS_00060569-exon-scaffold_344-1510915933:301529..302900 | TCONS_00060569-exon-scaffold_344-1510915933:301529..302900 | Clytia hemisphaerica | exon |
| TCONS_00060569-exon-scaffold_344-1575043694:301529..302900 | TCONS_00060569-exon-scaffold_344-1575043694:301529..302900 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_344 | supercontig | scaffold_344:301529..302900 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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