TCONS_00060562 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060562
Unique NameTCONS_00060562
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length307

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060562 ID=TCONS_00060562|Name=TCONS_00060562|organism=Clytia hemisphaerica|type=transcript|length=307bp
GCTTGTCCAAAATTGTCCTTAAACTGGCTAAATTAGGAAATGGTCGAAAA
TGGATCTGGGTTCTACTTTAAAGCACGTTTGAAATGCAATGTGAATATAG
GTTTCTTGCTTGTTTCTATAGCATCTAAAATACAATTATATTGAAGAacg
attttattaaaataaagtAACAAATACAGTACTTGAGCAATTTTAATACA
TGTCCAGAAAATATATCCCAACCATTTACGTGTTTTACGTGTTTACATAG
ATTTAAAATTTCTAACGGCATCCACAGAGAACCTTTAGGAAAAGATGAAT
Ccatgaa
Run BLAST on NCBI

transcript from alignment at scaffold_344:98750..99056

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060562 ID=TCONS_00060562|Name=TCONS_00060562|organism=Clytia hemisphaerica|type=transcript|length=307bp|location=Sequence derived from alignment at scaffold_344:98750..99056 (Clytia hemisphaerica)
ttcatgGATTCATCTTTTCCTAAAGGTTCTCTGTGGATGCCGTTAGAAAT
TTTAAATCTATGTAAACACGTAAAACACGTAAATGGTTGGGATATATTTT
CTGGACATGTATTAAAATTGCTCAAGTACTGTATTTGTTactttatttta
ataaaatcgtTCTTCAATATAATTGTATTTTAGATGCTATAGAAACAAGC
AAGAAACCTATATTCACATTGCATTTCAAACGTGCTTTAAAGTAGAACCC
AGATCCATTTTCGACCATTTCCTAATTTAGCCAGTTTAAGGACAATTTTG
GACAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038093XLOC_038093Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060562-exon-scaffold_344-1491911889:98750..99056TCONS_00060562-exon-scaffold_344-1491911889:98750..99056Clytia hemisphaericaexon
TCONS_00060562-exon-scaffold_344-1510915933:98750..99056TCONS_00060562-exon-scaffold_344-1510915933:98750..99056Clytia hemisphaericaexon
TCONS_00060562-exon-scaffold_344-1575043694:98750..99056TCONS_00060562-exon-scaffold_344-1575043694:98750..99056Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_344supercontigscaffold_344:98750..99056 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.996208	0.608815	0	0	0	0	0	0.351692	0	0	0	0.528771	0	0.239446	0	0	0	1.15378	0	0.48165	1.23826	0	0	0	0	0.821922	0.673879	0.477493	1.85124
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060562 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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