|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060552 ID=TCONS_00060552|Name=TCONS_00060552|organism=Clytia hemisphaerica|type=transcript|length=3656bp CTATATTTACCCATGGTTGAAACTTTTCGAGAAATTTGTATGCTCGTAAA TTCATTCGAAAGGGATTACTTCAAACTCGATTATGGGGTGCCCGAATTCA AAAGACTGTAAAATCAAAAGCCAAGATGGTAAAGTTGTTGACATTGAGTT TTGTGATTTTCCCAAATCGACTCTTATTGTAAACAAAAGAGTATTGGAAG CTTATTACGTAAAACTTCACATTGGCGCTGGTTCATTCAGTGATGTCTTC AAAGCTGAGGACAAGAAAACGAAAATGCCGTATGCTATTAAACGGATACA AATCAAAAACGAGAACGTAAGGGATATGTTTGTATTCGAGGCTaaagcat tacgtaatgttagCCATCCAAATATTATAAAACTGCATGATATCATCAGT ACTCCAGTATGTGCTTTTATTATAATGGATTTAGCAACAGGGGGTGATTT GTTTGAGCGTATAAGAGATAACTTCAGTAACGGAAGACGTTTAACAGTCA CGGAAGCACGTCGTGTCACGCAAATGATCACTGATGCTTTAGCGTACCTT CATGAAACAGCTGGTATTACGCACCGTGATTTAAAGGCTGAAAATGTACT TTACCATAGTCCTGGACCCTCTCGAGTCGTTATATCTGACTTTGGATTTG CATCTTTAAGGGGTCGAGACTCGGTCTTACATACCTTTTGTGGAACACCA GAATACCTGAGTCCAGAGCTTATTTGTAAGCAACAGTATACGAATAAAGT GGATGTTTGGGCGTTGGGCTGTCTGGTTTATTTCATGCTTTCTGGACACT TACCATGGACTGGATTGGAACTCAGAGACAAGATTGCCACAGAACCACAC AGTTTCTCAGAGCAGtatTGGAATGAAGTTCCCGAAGAGGCAAAAAGCTT CATCGATTCGTGTTTAGCGAAAACGGAAGAGAATCGAGCATCTTCGAGCC AGCTTCTTCGACACCAATGGATCAAAACACATAAACTAACGGCAGCCGAT AAAATCAACCGACAAAGACGAATATCTCTAGCTTCATCCAGACCTCAGAG TATTGGAATTCGGAGTTTAAAAAGCGGCCGATCATCTAAATCAGGCTTTT TACCACAACTTTCCAAATCTCCTGAAGAGCCAATGATAGCTGAAAAAAGA TTCAAAGTAGAATCACCCTCTCCTCCACCTCCGAGAATTTCCCCACCCCA ATTTACGTCACGCGCCCCTCCACCTTCACATAACAACCCACGTTCACCTC CAACTGTACAAAACATGCCACAGACATCAcaccaaataaaaacaaacaat tttcgaTTGCCTCTACAACCCAACTCAAACTTCGTACCAATGATAAACGA TATTGGCATGAGCGAGTCTATACCGTCAAGCAGTTCAATGACCTACAGTA ACGACTCTTTAATAGTCTTACCAACCCATTGTAATAATATGATCAACAAA GCTGATCTGTATCTAACCTCGGACGATGAAAGTCATTGTAATCCAAgaga acattcaaaattgcCAGCGCCTCAAGACCATAACATGCTAAACATGAATG GTATTGTAAACGGTGGTGTAGACTTGCCTGATCAAGAATGTATGGAGATC AGTACACATAACAACCTGAAACACCAAAACACAAATATGAACTTCTTGAA ATCTTCGAAACATGTAAATAGTGCCTTACCGNCCTGAAACACCAAAACGC AAGTATGAACTTCTTGAAATCTTCGAAACATGTAAATAGTGCTTTACCAC CAATAATGAATGGGCACCGTAATGCCCTATTCACACCACGTACTTTTGAA CAATACGTTGAAAGAGCTGTGTCTGAGAGTAGTAATAGTTCCAAAAAAAC ACATTTAGACGAACTTTTTACAGCACCAATCCTGAGGAAAAATACCGGGT TCATGAGGCGATCCCGTTCTTCGTCACCTTCGAATCCGATTTGCCCGATT TTACCAAACGGGTTTTTGAGTAAGTCGGAAGGACGAGTTCAAAACTGGTT AAGCTCAATATCACAAGAAAGTCGTCGACAAAAATGTCCTCGAGAGTCGG ACCCAGATCATCCAAGATTTTGTAAATTATGTATGGAAGGAAAATCGTTG GCtaaatctttttgaatgatCTTGTTCCGTGTTGTTGATGAGTTGTTGGG TTAACTATTGCTCTTTTAtggcaattttaattttttctcgcattttttgt tgatcaaaataGGTAATGTCTTACAAAGTTTAAAATGATACCCAAAATTA AAGCTAAGAATTACATTCGCATCTCCCAGTTTgtacacaacgttatttca atcTTGAGAGCCTTACAAATGTTTTTGAGAAGTTAAGTAAACGGAGTTGA ACAGCCAAGAGTCTTATAATTGTCTAAAACAGAGACACTGAATGACAATG CATGGTGGTTATAAATTTACGATCCTCACTCACTAGTGGAGCCAGctcaa gtttttttcaaaacataaaaatatctatTAAAGATATTGTTTGctgagaa aataaatttaatgcCAATAATGTACCTCTATAGCTTTTTCCACGTCATTT CGAGAGCCTGATTTGAACGTTGATCAAACCTTTGTGTTACTTTTCCCATG GTCTTGACTTAAAATATGTTTATACATGCGGAGTTATATTTTGATAGTGG AAATTGGTATCAAAGTACATGGCTGGCCTTAGGAAGGATATTCTCAAGTG TTTCGATATACAAAACAGTTAACAACAATTACAATATGTTCCCACAAAAC AAAACTGTATTGGAGATATTcctgttttgtttattttaatgaccagctca aatttttgatgGTGATATTTCTTTTTGGGTAGCCCCCGGGGCCCCATCCT TGAAaagtttttccataaaaaaaaNGGTTTTTGAGTAAGTCGGAAGGACG AGTTCAAAACTGGTTAAGCTCAATATCACAAGAAAGTCGTCGACAAAAAT GTCCTCGAGAGTTGGACCCAGATCATCCAAGATTTTGTAAATTATGTATG GAAGGAAAATCGTTGGCtaaatctttttgaatgatCTTGTTCCGTGTTGT TGATGAGTTGTTGGGTTAACTATTGCTCTTTTAtggcaattttaattttt tctcgcattttttgttgatcaaaataGGTAATGTCTTACAAAGTTTAAAA TGATACCCAAAATTAAAGCTAAGAATTACATTCGCATCTCCCAGTTTgta cacaacgttatttcaatcTTGAGAGCCTTACAAATGTTTTTGAGAAGTCA AGTAGACGGAGTTGAACTTCCAAGAGTCTTATAATTGTCTAAAACAGAGA CACTACATGACAATGCATGGTGGTTATAAATTTACGATCCTCACTCACTA GTGGAGCCAGctcaagtttttttcaaaacataaaaatatctatTAAAGAT ATTGTTTGctgagaaaataaatttaatgcCAATAGTACGTCTATAGCTTT TTCCACGTCATTTCGAGAGCCTGATTTGAACGTTGATCAAACCTTTGTGT TACTTTTCCCATGGTCTTGACTTAAAATATGTTTATACATGCGGAGTTAT ATTTTGATAGTGGAAATTGGTATCAAAGTACATGGCTGGCCTTAGGAAGG ATATTCTCAAGTGTTTCGATATACAAAACAGTTAACAACAATTACAATAT GTTCCC Run BLAST on NCBI protein sequence of TCONS_00060552-protein >TCONS_00060552-protein ID=TCONS_00060552-protein|Name=TCONS_00060552-protein|organism=Clytia hemisphaerica|type=polypeptide|length=534bp
MGCPNSKDCKIKSQDGKVVDIEFCDFPKSTLIVNKRVLEAYYVKLHIGAG SFSDVFKAEDKKTKMPYAIKRIQIKNENVRDMFVFEAKALRNVSHPNIIK LHDIISTPVCAFIIMDLATGGDLFERIRDNFSNGRRLTVTEARRVTQMIT DALAYLHETAGITHRDLKAENVLYHSPGPSRVVISDFGFASLRGRDSVLH TFCGTPEYLSPELICKQQYTNKVDVWALGCLVYFMLSGHLPWTGLELRDK IATEPHSFSEQYWNEVPEEAKSFIDSCLAKTEENRASSSQLLRHQWIKTH KLTAADKINRQRRISLASSRPQSIGIRSLKSGRSSKSGFLPQLSKSPEEP MIAEKRFKVESPSPPPPRISPPQFTSRAPPPSHNNPRSPPTVQNMPQTSH QIKTNNFRLPLQPNSNFVPMINDIGMSESIPSSSSMTYSNDSLIVLPTHC NNMINKADLYLTSDDESHCNPREHSKLPAPQDHNMLNMNGIVNGGVDLPD QECMEISTHNNLKHQNTNMNFLKSSKHVNSALPX Run BLAST on NCBI transcript from alignment at scaffold_344:253034..264515- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060552 ID=TCONS_00060552|Name=TCONS_00060552|organism=Clytia hemisphaerica|type=transcript|length=11482bp|location=Sequence derived from alignment at scaffold_344:253034..264515- (Clytia hemisphaerica) CTATATTTACCCATGGTTGAAACTTTTCGAGAAATTTGTATGCTCGTAAA
TTCATTCGAAAGGGATTACTTCAAACTCGATTATGGGGTGCCCGAATTCA
AAAGACTGTAAAATCAAAAGCCAAGATGGTAAAGTTGTTGACATTGAGTT
TTGTGATTTTCCCAAATCGACTCTTATTGTAAACAAAAGAGTATTGGAAG
CTTATTACGTAAAACTTCACATTGGAGCTGGCNATTGTAAACAAAAGAGT
ATTGGAAGCTTATTACGTAAAACTCCACATTGGCGCTGGTTCATTCAGTG
ATGTCTTCAAAGCTGAGGACAAGAAAACGAAAATGCCGTATGCTATTAAA
CGGATACAAATCAAAAACGAGAACGTAAGGGATATGTTTGTATTCGAGGC
TAAAGCATTACGTAATGTTAGCCATCCAAATATTATAAAACTGCATGATA
TCATCAGTACTCCAGTATGTGCTTTTATTATAATGGATTTAGCAACAGGG
GGTGATTTGTTTGAGCGTATAAGAGATAACTTCAGTAACGGAAGACGTTT
AACAGTCACGGAAGCACGTCGTGTCACGCAAATGATCACTGATGCTTTAG
CGTACCTTCATGAAACAGCTGGTATTACGCACCGTGATTTAAAGGCTGAA
AATGTACTTTACCATAGTCCTGGACCCTCTCGAGTCGTTATATCTGACTT
TGGATTTGCATCTTTAAGGGGTCGAGACTCGGTCTTACATACCTTTTGTG
GAACACCAGAATACCTGAGTCCAGAGCTTATTTGTAAGCAACAGTATACG
AATAAAGTGGATGTTTGGGCGTTGGGCTGTCTGGTTTATTTCATGCTTTC
TGGACACTTACCATGGACTGGATTGGAACTCAGAGACAAGATTGCCACAG
AACCACACAGTTTCTCAGAGCAGGTAGGGAGCTTTTCTTTTACAACAAAA
AGTACTGAAACATGGGACCGTGGAAGATTTCTATCTCACGGCTTTCTCGA
CTAAATATTTTACGCTCTATTGAGTTTCTTTTAGTTAATCTCCATACTAA
ATCATACTTTGTCAGTTCGAATCTTACCTCTACAAAAGTGAGGTCGTTGT
GTTCTGTGTTGCAAAGCCATCCGTAAGTGCAAAGATAAAGCATTCAGCTA
CGGTAAGGAAGTCATGGGTTAGTATAGAATTATAAAAGGGTACTTAATGC
CTCTCATGTTTGTGCTCAACAATTCATAGAAGGGTCAATAGAAAAAGTTG
AACCCTCCCCTAGCAAACAGTATATGAACGTTATCCACACTTTGAGGTCA
TTCCCTCTATATATAATTCTTGATATTCATGACGTAATCTTTTATACGGA
AACACCCAAAAAACACTGAACGTTTGCCACCAGTGTTGAATTTAAACAAT
GAAACTGCGATGGGAAACAGCCAGTGTTTTTCATGTGTTTCAGTAGAAAA
GATTACGTCATGAACATGAAGAATACAGAGCAAAGATCGCGTGCAATATT
TGATGCGTAGGTTACTTGAAAGAAGGTTTGATCAAGACCATGGATGGGAA
ATATTACGAGAATTATATTTGAAATGGATCCACTTTCAGTTTCGATTGGG
GATCGTATTCAAATTATTTTTCAGAATATAATAAATATTCAAGTCAAATC
TTTTAATGTTGAATATACTCTACTTTTAAAAATGATCTGTTTGGTGTTGG
AAATCAAGAGATACATACATCCCCTGACTCATTACTAACGCTTACTGGTC
AGTGATATACTTTGTATCTGTTTGATGTTGGAAACCTAGAGAATATATAC
ATTCCCTGGCTCTTTCCTAGTACTTATCGATCGGTCGTAATTTGGAGCTT
GATGACATCAATTTTTCGTTAAATTTCAAGTCAACTGTGTTGACCTTTCA
CTTTCTTTTGGTCTTGACAACAACTTTTTTTCCTTTTTCGATTTCAATTT
CTTCTCTGACGTGTTTGACTTTCAAGTACTGTCTTGCCTGTTTTTGATCG
TTCACATAATGTCGAAGGTCTCGTTAAATTCAAAGCTTTGCCAGGCTTGT
CAATTACTGATCCTTTTTGATAACGTTAATTTGGGCATTCAATATGAGAC
CTTGTGAAGGTGAAATCTTCGAGAATATTTTGTAAGAGCAATACCTTCGT
GAATATTCTGGTAGAGAGTATAACCCTCTTCAAAAATTTGTAAACGAATT
CAAAATTTGGAGATTAGAGGAAAGAGTTAATTGAAGGCAATTCATTTTAG
TCACAAATATTAAAGAATTTTATTTCCTCTAGAATGTCATATCAGGAATA
AAAATAACGAAAGGGCATCTAAAAATAAGATATTGAATATCATATCTCTC
TCATGTTTCTCTGGTCTGTAAAAATCTCCCTTGGGCCTTTCTTTTCGATG
AATGTTTTTTTACTAGTACTTCTTTAATGAGACAAGAATCTCTCTTTTAG
AAAGTGTAAAATTTCTTGTCATTCTTAGTACTGCTTTTGTCCGGGGCGGG
GGGGGGAGTGATTACTCCCACTGAAGTAGACTGGGAATCCAGTCGTTTAT
AACGTTTTTGTTGAAAGCGGGAAATTTTTATTTTTATGTCGGGATATGGT
TAAAATAAACTATATTGATGCTCCTGTCAAGTTTTCTACTTCCTATTTTT
TACTGAGTTAAGTCGTCTAGCATGCTAGACTACCACTGAAGGTGAAATCT
TCTTGGATCTTGGACTGATTTTTTCCATAGAACTTTCAGATTTGTATACA
GTCTAGGAACATCCTGCATTTTCGGTATAACTAAGAAAGAAAATTGACGT
TAATATACTTCAATTGCGGGATATTAATGAAAACTGCCCTGTATAGTTTT
CATAATTAGAGGGTTGACACTTTACGATATATTCCATTGACACAACCGTG
TTCTTATAGTACTCATGGCTTTCAGGAGGAAGAGGTCATTGGAGTCATTG
TGCATAAAGGCATTTGTCTTTGATTCAGATCAATAACATCTGAGAGACCT
TTAGGAATGAAATAAGAACATTTTTATCTTAGTTTACACTCCTGTCCCAC
CGGGCTCGAAATCTTGGCTGAACTTTCCGGTGGGTCTGTGACACAGGGAT
GTTGGATTAAAAGATCGGAAAGTTGAATTTTTGCTGAAGGATCAAAAGTA
CACTACTTCAATTTCGAACTGCTCCAACTGGCAATATGTTTGTTATTGAA
AACCACTCAATTTTATCTAACGTTTAAGGAATTCAATTCTTGTTTATGAC
AATGAATCTAACTAAAAGCCTATGCAAACTCATGTTGAAACAATTTCTGT
TTTTGGCAGCTAACTTGATACAAAGTGAAAAATACTTGATCGTTCATGAT
AATTTTGTAATTTTTAGAAATTTAAAGTCATGTTTAAACAATTTGCAGAC
TTTGATGCCAAAACATGATCTGACCGTGCATCGTAAGGAATAACGTCCTA
AACATAGACAAGTACACGTTTTATTTATAAGAACAAACTATATAAGAACA
TAAGGCTTCGATTGCCAAAATCTTAAGAACAAGTTAAGAACATTTTAAGG
CTTTGCGGACTCTAAAGCCCCTAATTTCTTAGGAAAATGGACCAAAATAC
TCACAAAATGGTGAAATTAAGAGCATGTTAAGAATATTTTTTGGCTTAAA
ACTCAAAAAGATTAAGAACATCCAAAGGCTTCAAAAATGTTGGATGTTCC
TATAAAAAAAAACGTGTATCTTCTTTATTTCACAATGATGAAACTTTAAA
CTGATTTAGTGGTCTTTTGCCAACATAAATAGTAAAGGAGCCTCTTCAAA
AAAGATTTTTTACTGTTCATTCCTATACCCACACACACATAAACACTTGG
ACCATATACTCTTTTTTTGTAAGAATCAGTAAACTTTTGTTAAGCCTCGG
CTGTTCTTATGGTTCTTTTTGTGTTCTTATGCTAAGAGAGAAACTGAGGT
TTTTTTAGTCATGGCGCACAATTTCAAAACTTTTACATTCAATTTCCGTC
AATCTAGGAATTTGTTAGGAGTATTTTGAGCCTCATTGTTCTTATAAAAT
CATTTTTACAAAACCAAAACAATATAGTCTTGTTTTTCTTATAGAATTCT
TAATTTATCTCATATTAATGTTGGCAGATGATTTGCTAGACCCTTTTGGT
TTATTTACTTGGCTAGTAGAAGCATCCAAAAACAAATCCTTCCATCGTCA
TTTCAAAATGATGCAAAAGCCATCTCGATATTTATGAATTTTTGAGCTAG
CTTTCTGCAGCCTTGCAATATATCATGGACTGAAAATGACGGACTTTTTT
TAACTATTTGACGGATATTCAGATGACGGAAATTTAGCGACGAACTTTGT
TATTCTTCTCTGAGCTGCTTCACCAGTTTCCCCGGCTAAACCATACATAC
CCAGCTGGCACACAACGTTGTTTCAATGTTTTTCTAACATTCACAACGTC
CATATAACGTTAGGTAAACGTTGAAATAACGTTGTGTGCCTGCTGGGTAC
TTATACTTTCTGAGTTCCCTTCTAGACCAGCTCACATTTTCTGTCTTTTC
TTGGTCTAGTATGTTTTTGACAATCTGACACTCAAAATCTACAATGTTTT
GATTACAGTCTTGTTTCATTTATATTAAATCCTGATCTAGTAATTTCTTT
CTTCCATGAATCTGTTTGCGCGTATAATTGCGTATCTGAAATTAAATGAA
AATTTAAAGCCTAATGTCTGCATCATTACATCATTGTTCTTTTAGAAAAG
AGTGTATTCAAGTCAAAAAGGCTTCTTTAACTCGAATCTGTCTTCTTAAC
TCGAACAAGCAATCGAGCTCCTTCAGTTAATACTAACTTTGGGAATGGAA
ATTTCTATCGAAATCCCAATTGGGCTCAAAAAAAGCTTTGGAATGCAATT
TTTCGTATTGAATTTCGAATGGGAGCGAAAACAAGTTTATTTTTCCCACC
GAGCAAGAAATTTTGACCAAGTTTTCCAGTGATATGGGGTCACATCGAAT
CTTTGAACACTTTGACAAAAGGGGTGTTTTTAGCTCAATAAATATTCCTC
AACAATATTATACATTGCTGCGTGTGGCAAATCAGGCACGAAAACGCACC
TCTCTTACGTTCAATTTAGAGTATTTTGTTGCATGCAGCAGTCATAAACA
AACAAAATTATATAATTTTTCATTACAAAATGGTTCTGTGATGTTTTGAT
AGAAAAAATTACATAAAACCCAACAATACGAATCTGACATGTTTTGTTAG
TATTCGTATACATTTGTCTCACACTTCATTTTTCTTCTGCTCTTATTCTC
TCTCCAGTACACACTCTAAATACCACACACAATGTTTCGTGAGTCTGTAT
TCTATATCCAACCTACGGTATTTCACTATCTTTTTCTCGGTGAAATTTGA
GATCTTTGAGATAAATTATAGATTTCCAGTTCCCTCCAGTTGAACTAATG
ATCTCAGAATGTCAGTATCTTGCAAAATTAACGTCAGTCCGGAGATGGTT
GCTATTGGCTACATTTTTTCGTAAGTTGAACCAAGAAAATGAGAATAAGA
AAACAAGTTAAGAACCCCTTGTCTCACAGCCCCGGTGGAACTTTCATTCC
TATTGAAATCCCAATGGGAATAGAAATTCCTTTGTTCCAAGGTTAAAAAA
ATCAGTGCCACAATGATTTTGACGTGCAATTCTTAAACATTGAATTTCGA
ATGGAGATGAAATTATTGTCAATCTTTCCAGTAGGGGTGGGTTCCCAGTG
GGTCTGCAACACAGGGGTATAGTTAAAGAACAGAGAATTAACCGCAATGA
ACTTACAAAAGCCTAAATAAAAATATGACAAAATATTGACGAAACAACAT
TCGATAGACGTCTTTTCCCATACTATAGTCCATTGTTATACTTATACTTA
AGCTACATACTTAGTAAATCCAATTTTAGTAGCTAAGAAAATAAGGAACT
CGATAAGGAACTTTGAGGCTGCGATTCTATGGAAAAATAAGGAACTCCAG
GCTCGGAGCTAAGCTAAGGCTGATTCAAAATTTTTCATTTATTTTTTGCC
TGAGAATAAGATCAAATTAAATAAATGGACTGATAACGGCTCGACTAGAC
GTGTTTTTGTGTTTCGTGGAAATTTTCCGCCCTGGTTGCATATGAAAGTG
GTTTTTCGGAAGCTGTCATGATTTATACGCTAATTATAGTGTGAGTTACG
CGTTATTTGTTTGTTGATGAAAGGGAGATTACGAGAAGGAAAAATACGAG
AGTAGTACAAAAACAACTCCTACGCAAGAAGCAATGTCGCTCACTCCCTA
TTGAATCTATCACTCCATTTTCAATAAATCGTCACGAATCTCTCAAATAG
TTGTTTATTGTGAGAGAAAGTGGAGACGGTGTCAAAAACTCACAAAAAAT
ACTTCTTTCACGCGAAAACCTATTTTGTCATAAAGAGATCTATCTATACA
AGGTTCAATATGTATTGACGAGAACAAATGGTGTATCAAGTGTGCATGAG
GACCGCCGACAGGGTAGTTACAAAAAAATTTATATTAGTCATCAAAACTC
CTCGTGAGAAACCCCTTCAAGAAGATGACAGAATTTTTCTTCTTTCGTGG
TTCGACTGGTGATCCCTTTCACTGCCATCTTTTTTACTTAACACAAGTTT
ACTTCGTTGACTTCCAGGATCGGAATTTGAGCTTATTTACTACATACGCT
TTAAGTACCTATCAAATGTAGAAGTCCCATTGAATACCTTTTTTTCATTT
TATGAATCTCCCAGTAGGATTCACACCCCCTTCTCACAGACCCGAAGGGA
TTTTTTCAGCCAGTGTGGGTAAAATAGCGGTTCATAAACTCGATGGGGAT
CGATATTCCCATGTTTGCTCATGACTGGTGATTTGAATTTGTTTTCTAGC
CAATGAATTCAGTGGGGATGGAAAAAATAACACAATAATTTGCAGTGAGG
ATTGACTTATCTGATTATTTTTGGCGGGGACAAACTTAAGAGTAAATCTT
TCCACTGCGGACGATATTTTCCCCAATTTTTCTAGTGGGTCTGTGAGAAG
GGAGTGTGAATTTGGTCGCTTAGTTCTTCAATTTTACCTAGTTGTCCTGT
GTTTGTTTCAATGCGATGCCGTTGTCGAGGAGGTGCGCTAGTGCTGCCAC
TCACTGAACAGAGGTGGAAATTATATGTTAATAAACTTAAATTTTCTTAT
AGTTCCATCACAATTGAGCTCTAAGTGACTTAATTAAGTAAAAAAGGAAA
TTTTTGAGTCAGGAAACTAGCACTAGTTTCATGTTTAATAATAGAGCTTT
CTCAATGGTCAGGAAATTATCCATTCAAAGGTTTTAAGTACCCCCCTGTT
AACGGAAGTATGAATTCTAGTCGAACGTTGCGGTTGATACCGTTAGATTC
TAGCAAGTTTCGTCCCTAATTCTGGTATAACCTCAGTTTTATAAATTTGC
AATAATCATACCAATTCCCACTGGAGAATTGTAGAAATTTTGGAAAAATA
CCCAGAAATTTCATTTCACTCACTATATTCCAGTTCTAAATTTGTATTTC
CTTTCTGAAAAATATTGGAATATCAGGGAAAAGTATCCATCCCTATGAAA
TATCAAAGAAAACAATAGTATTTTCAATTTCTTCACCCTAAATGGTAGTT
TATCCATGATTGTATTCCAATCGGGAAATTTAATTTCCACGGGGGCAGTG
AGACAGGCGTGTACAAAGTAGCAAAAGTTCTAAAACATGTTATGACTTGT
TGAGAGATTCAACTCTTTTTCCAACATTTTTGCGACTAATTAGGGTAGAA
ACTAGTCCAAGTGTGTCATTTTTGTTTACCTTCTTGTCTAGAATGCCAAT
GTTTACAAAAAGTGAGGATCAAAAGCCTTCAGATTAGAAAGAGAGAGAGA
AAGAATTTTTTCTCAAGAAGTGTAATCACATGAGAGTGCCGACCGGCTTT
ACAATCACCTTTGAAAAAGAAATTTATTTTGGACTCTTGCCAAGCTTTCG
TTATTAGCCGAGGTCTCCTTTTTTTCATTCTAGACAGAAAGGTCATAGCC
TGAAACTATTTAGTATACCTCAACATGTGATTTAAAAACATTCTATATAT
TTNGGTCATAGCCTGATATCAAACTATTTAGCATACCCACTTTGTGATTT
TAGAACATGCTATATTTTTCTTGCTGAATGCGGAAATAGACCAACCAGAC
ATGCGCACTCATAAATCAATATGTTTTTGTCTGTAAAAAACGCGACACTG
AGATATAATCCTTTTCAGACTGTATGGTATATAAGGCGGGCGCAAGGCAC
ATTGTCTCTTCTCTCCCATAAATAAACTACTTGAACTCTAGGCTCTTCCC
GTGACATTTCATATTTTTCTCTTATGTTTGGCTAGCCTTGTTGCCTAAAC
AGACATAGCTTTTTTCTCGACACTTTTCCCTCTGTTTCCTCACTACAATA
TAAAGAAAGACACGTACTACGTAGACAAACTGAGTGAACTTGCTTTTTTT
TGCGTCAACTAAAAAGCTCAGCCACAGCTGAAATTACCCTCAATTAGCTT
CTACCCTGATTAGTTTATTTTTTCGATATATAGAACGACTTAAGACCTGT
CTCTTTTACTAACTGTTGCCCTGTTCCAAATGCTATATTCAGCAAGAAAT
TATAAGTTTAAATAAAAAGAAATTCATTTATTTTGTTTTAGTATTGGAAT
GAAGTTCCCGAAGAGGCAAAAAGCTTCATCGATTCGTGTTTAGCGAAAAC
GGAAGAGAATCGAGCATCTTCGAGCCAGCTTCTTCGACACCAATGGATCA
AAACACATAAACTAACGGCAGCCGATAAAATCAACCGACAAAGACGAATA
TCTCTAGCTTCATCCAGACCTCAGAGTATTGGAATTCGGAGTTTAAAAAG
CGGCCGATCATCTAAATCAGGCTTTTTACCACAACTTTCCAAATCTCCTG
AAGAGCCAATGATAGCTGAAAAAAGATTCAAAGTAGAATCACCCTCTCCT
CCACCTCCGAGAATTTCCCCACCCCAATTTACGTCACGCGCCCCTCCACC
TTCACATAACAACCCACGTTCACCTCCAACTGTACAAAACATGCCACAGA
CATCACACCAAATAAAAACAAACAATTTTCGATTGCCTCTACAACCCAAC
TCAAACTTCGTACCAATGATAAACGATATTGGCATGAGCGAGTCTATACC
GTCAAGCAGTTCAATGACCTACAGTAACGACTCTTTAATAGTCTTACCAA
CCCATTGTAATAATATGATCAACAAAGCTGATCTGTATCTAACCTCGGAC
GATGAAAGTCATTGTAATCCAAGAGAACATTCAAAATTGCCAGCGCCTCA
AGACCATAACATGCTAAACATGAATGGTATTGTAAACGGTGGTGTAGACT
TGCCTGATCAAGAATGTATGGAGATCAGTACACATAACAACCTGAAACAC
CAAAACACAAATATGAACTTCTTGAAATCTTCGAAACATGTAAATAGTGC
CTTACCGNCCTGAAACACCAAAACGCAAGTATGAACTTCTTGAAATCTTC
GAAACATGTAAATAGTGCTTTACCACCAATAATGAATGGGCACCGTAATG
CCCTATTCACACCACGTACTTTTGAACAATACGTTGAAAGAGCTGTGTCT
GAGAGTAGTAATAGTTCCAAAAAAACACATTTAGACGAACTTTTTACAGC
ACCAATCCTGAGGAAAAATACCGGGTTCATGAGGCGATCCCGTTCTTCGT
CACCTTCGAATCCGATTTGCCCGATTTTACCAAACGGGTTTTTGAGTAAG
TCGGAAGGACGAGTTCAAAACTGGTTAAGCTCAATATCACAAGAAAGTCG
TCGACAAAAATGTCCTCGAGAGTCGGACCCAGATCATCCAAGATTTTGTA
AATTATGTATGGAAGGAAAATCGTTGGCTAAATCTTTTTGAATGATCTTG
TTCCGTGTTGTTGATGAGTTGTTGGGTTAACTATTGCTCTTTTATGGCAA
TTTTAATTTTTTCTCGCATTTTTTGTTGATCAAAATAGGTAATGTCTTAC
AAAGTTTAAAATGATACCCAAAATTAAAGCTAAGAATTACATTCGCATCT
CCCAGTTTGTACACAACGTTATTTCAATCTTGAGAGCCTTACAAATGTTT
TTGAGAAGTTAAGTAAACGGAGTTGAACAGCCAAGAGTCTTATAATTGTC
TAAAACAGAGACACTGAATGACAATGCATGGTGGTTATAAATTTACGATC
CTCACTCACTAGTGGAGCCAGCTCAAGTTTTTTTCAAAACATAAAAATAT
CTATTAAAGATATTGTTTGCTGAGAAAATAAATTTAATGCCAATAATGTA
CCTCTATAGCTTTTTCCACGTCATTTCGAGAGCCTGATTTGAACGTTGAT
CAAACCTTTGTGTTACTTTTCCCATGGTCTTGACTTAAAATATGTTTATA
CATGCGGAGTTATATTTTGATAGTGGAAATTGGTATCAAAGTACATGGCT
GGCCTTAGGAAGGATATTCTCAAGTGTTTCGATATACAAAACAGTTAACA
ACAATTACAATATGTTCCCACAAAACAAAACTGTATTGGAGATATTCCTG
TTTTGTTTATTTTAATGACCAGCTCAAATTTTTGATGGTGATATTTCTTT
TTGGGTAGCCCCCGGGGCCCCATCCTTGAAAAGTTTTTCCATAAAAAAAA
NGGTTTTTGAGTAAGTCGGAAGGACGAGTTCAAAACTGGTTAAGCTCAAT
ATCACAAGAAAGTCGTCGACAAAAATGTCCTCGAGAGTTGGACCCAGATC
ATCCAAGATTTTGTAAATTATGTATGGAAGGAAAATCGTTGGCTAAATCT
TTTTGAATGATCTTGTTCCGTGTTGTTGATGAGTTGTTGGGTTAACTATT
GCTCTTTTATGGCAATTTTAATTTTTTCTCGCATTTTTTGTTGATCAAAA
TAGGTAATGTCTTACAAAGTTTAAAATGATACCCAAAATTAAAGCTAAGA
ATTACATTCGCATCTCCCAGTTTGTACACAACGTTATTTCAATCTTGAGA
GCCTTACAAATGTTTTTGAGAAGTCAAGTAGACGGAGTTGAACTTCCAAG
AGTCTTATAATTGTCTAAAACAGAGACACTACATGACAATGCATGGTGGT
TATAAATTTACGATCCTCACTCACTAGTGGAGCCAGCTCAAGTTTTTTTC
AAAACATAAAAATATCTATTAAAGATATTGTTTGCTGAGAAAATAAATTT
AATGCCAATAGTACGTCTATAGCTTTTTCCACGTCATTTCGAGAGCCTGA
TTTGAACGTTGATCAAACCTTTGTGTTACTTTTCCCATGGTCTTGACTTA
AAATATGTTTATACATGCGGAGTTATATTTTGATAGTGGAAATTGGTATC
AAAGTACATGGCTGGCCTTAGGAAGGATATTCTCAAGTGTTTCGATATAC
AAAACAGTTAACAACAATTACAATATGTTCCC Coding sequence (CDS) from alignment at scaffold_344:253034..264515- >TCONS_00060552 ID=TCONS_00060552|Name=TCONS_00060552|organism=Clytia hemisphaerica|type=CDS|length=4815bp|location=Sequence derived from alignment at scaffold_344:253034..264515- (Clytia hemisphaerica) TATTGGAATGAAGTTCCCGAAGAGGCAAAAAGCTTCATCGATTCGTGTTT AGCGAAAACGGAAGAGAATCGAGCATCTTCGAGCCAGCTTCTTCGACACC AATGGATCAAAACACATAAACTAACGGCAGCCGATAAAATCAACCGACAA AGACGAATATCTCTAGCTTCATCCAGACCTCAGAGTATTGGAATTCGGAG TTTAAAAAGCGGCCGATCATCTAAATCAGGCTTTTTACCACAACTTTCCA AATCTCCTGAAGAGCCAATGATAGCTGAAAAAAGATTCAAAGTAGAATCA CCCTCTCCTCCACCTCCGAGAATTTCCCCACCCCAATTTACGTCACGCGC CCCTCCACCTTCACATAACAACCCACGTTCACCTCCAACTGTACAAAACA TGCCACAGACATCACACCAAATAAAAACAAACAATTTTCGATTGCCTCTA CAACCCAACTCAAACTTCGTACCAATGATAAACGATATTGGCATGAGCGA GTCTATACCGTCAAGCAGTTCAATGACCTACAGTAACGACTCTTTAATAG TCTTACCAACCCATTGTAATAATATGATCAACAAAGCTGATCTGTATCTA ACCTCGGACGATGAAAGTCATTGTAATCCAAGAGAACATTCAAAATTGCC AGCGCCTCAAGACCATAACATGCTAAACATGAATGGTATTGTAAACGGTG GTGTAGACTTGCCTGATCAAGAATGTATGGAGATCAGTACACATAACAAC CTGAAACACCAAAACACAAATATGAACTTCTTGAAATCTTCGAAACATGT AAATAGTGCCTTACCGNCCTGAATTGGCGCTGGTTCATTCAGTGATGTCT TCAAAGCTGAGGACAAGAAAACGAAAATGCCGTATGCTATTAAACGGATA CAAATCAAAAACGAGAACGTAAGGGATATGTTTGTATTCGAGGCTAAAGC ATTACGTAATGTTAGCCATCCAAATATTATAAAACTGCATGATATCATCA GTACTCCAGTATGTGCTTTTATTATAATGGATTTAGCAACAGGGGGTGAT TTGTTTGAGCGTATAAGAGATAACTTCAGTAACGGAAGACGTTTAACAGT CACGGAAGCACGTCGTGTCACGCAAATGATCACTGATGCTTTAGCGTACC TTCATGAAACAGCTGGTATTACGCACCGTGATTTAAAGGCTGAAAATGTA CTTTACCATAGTCCTGGACCCTCTCGAGTCGTTATATCTGACTTTGGATT TGCATCTTTAAGGGGTCGAGACTCGGTCTTACATACCTTTTGTGGAACAC CAGAATACCTGAGTCCAGAGCTTATTTGTAAGCAACAGTATACGAATAAA GTGGATGTTTGGGCGTTGGGCTGTCTGGTTTATTTCATGCTTTCTGGACA CTTACCATGGACTGGATTGGAACTCAGAGACAAGATTGCCACAGAACCAC ACAGTTTCTCAGAGCAGATGGGGTGCCCGAATTCAAAAGACTGTAAAATC AAAAGCCAAGATGGTAAAGTTGTTGACATTGAGTTTTGTGATTTTCCCAA ATCGACTCTTATTGTAAACAAAAGAGTATTGGAAGCTTATTACGTAAAAC TTCACTATTGGAATGAAGTTCCCGAAGAGGCAAAAAGCTTCATCGATTCG TGTTTAGCGAAAACGGAAGAGAATCGAGCATCTTCGAGCCAGCTTCTTCG ACACCAATGGATCAAAACACATAAACTAACGGCAGCCGATAAAATCAACC GACAAAGACGAATATCTCTAGCTTCATCCAGACCTCAGAGTATTGGAATT CGGAGTTTAAAAAGCGGCCGATCATCTAAATCAGGCTTTTTACCACAACT TTCCAAATCTCCTGAAGAGCCAATGATAGCTGAAAAAAGATTCAAAGTAG AATCACCCTCTCCTCCACCTCCGAGAATTTCCCCACCCCAATTTACGTCA CGCGCCCCTCCACCTTCACATAACAACCCACGTTCACCTCCAACTGTACA AAACATGCCACAGACATCACACCAAATAAAAACAAACAATTTTCGATTGC CTCTACAACCCAACTCAAACTTCGTACCAATGATAAACGATATTGGCATG AGCGAGTCTATACCGTCAAGCAGTTCAATGACCTACAGTAACGACTCTTT AATAGTCTTACCAACCCATTGTAATAATATGATCAACAAAGCTGATCTGT ATCTAACCTCGGACGATGAAAGTCATTGTAATCCAAGAGAACATTCAAAA TTGCCAGCGCCTCAAGACCATAACATGCTAAACATGAATGGTATTGTAAA CGGTGGTGTAGACTTGCCTGATCAAGAATGTATGGAGATCAGTACACATA ACAACCTGAAACACCAAAACACAAATATGAACTTCTTGAAATCTTCGAAA CATGTAAATAGTGCCTTACCGNCCTGAATTGGCGCTGGTTCATTCAGTGA TGTCTTCAAAGCTGAGGACAAGAAAACGAAAATGCCGTATGCTATTAAAC GGATACAAATCAAAAACGAGAACGTAAGGGATATGTTTGTATTCGAGGCT AAAGCATTACGTAATGTTAGCCATCCAAATATTATAAAACTGCATGATAT CATCAGTACTCCAGTATGTGCTTTTATTATAATGGATTTAGCAACAGGGG GTGATTTGTTTGAGCGTATAAGAGATAACTTCAGTAACGGAAGACGTTTA ACAGTCACGGAAGCACGTCGTGTCACGCAAATGATCACTGATGCTTTAGC GTACCTTCATGAAACAGCTGGTATTACGCACCGTGATTTAAAGGCTGAAA ATGTACTTTACCATAGTCCTGGACCCTCTCGAGTCGTTATATCTGACTTT GGATTTGCATCTTTAAGGGGTCGAGACTCGGTCTTACATACCTTTTGTGG AACACCAGAATACCTGAGTCCAGAGCTTATTTGTAAGCAACAGTATACGA ATAAAGTGGATGTTTGGGCGTTGGGCTGTCTGGTTTATTTCATGCTTTCT GGACACTTACCATGGACTGGATTGGAACTCAGAGACAAGATTGCCACAGA ACCACACAGTTTCTCAGAGCAGATGGGGTGCCCGAATTCAAAAGACTGTA AAATCAAAAGCCAAGATGGTAAAGTTGTTGACATTGAGTTTTGTGATTTT CCCAAATCGACTCTTATTGTAAACAAAAGAGTATTGGAAGCTTATTACGT AAAACTTCACTATTGGAATGAAGTTCCCGAAGAGGCAAAAAGCTTCATCG ATTCGTGTTTAGCGAAAACGGAAGAGAATCGAGCATCTTCGAGCCAGCTT CTTCGACACCAATGGATCAAAACACATAAACTAACGGCAGCCGATAAAAT CAACCGACAAAGACGAATATCTCTAGCTTCATCCAGACCTCAGAGTATTG GAATTCGGAGTTTAAAAAGCGGCCGATCATCTAAATCAGGCTTTTTACCA CAACTTTCCAAATCTCCTGAAGAGCCAATGATAGCTGAAAAAAGATTCAA AGTAGAATCACCCTCTCCTCCACCTCCGAGAATTTCCCCACCCCAATTTA CGTCACGCGCCCCTCCACCTTCACATAACAACCCACGTTCACCTCCAACT GTACAAAACATGCCACAGACATCACACCAAATAAAAACAAACAATTTTCG ATTGCCTCTACAACCCAACTCAAACTTCGTACCAATGATAAACGATATTG GCATGAGCGAGTCTATACCGTCAAGCAGTTCAATGACCTACAGTAACGAC TCTTTAATAGTCTTACCAACCCATTGTAATAATATGATCAACAAAGCTGA TCTGTATCTAACCTCGGACGATGAAAGTCATTGTAATCCAAGAGAACATT CAAAATTGCCAGCGCCTCAAGACCATAACATGCTAAACATGAATGGTATT GTAAACGGTGGTGTAGACTTGCCTGATCAAGAATGTATGGAGATCAGTAC ACATAACAACCTGAAACACCAAAACACAAATATGAACTTCTTGAAATCTT CGAAACATGTAAATAGTGCCTTACCGNCCTGAATTGGCGCTGGTTCATTC AGTGATGTCTTCAAAGCTGAGGACAAGAAAACGAAAATGCCGTATGCTAT TAAACGGATACAAATCAAAAACGAGAACGTAAGGGATATGTTTGTATTCG AGGCTAAAGCATTACGTAATGTTAGCCATCCAAATATTATAAAACTGCAT GATATCATCAGTACTCCAGTATGTGCTTTTATTATAATGGATTTAGCAAC AGGGGGTGATTTGTTTGAGCGTATAAGAGATAACTTCAGTAACGGAAGAC GTTTAACAGTCACGGAAGCACGTCGTGTCACGCAAATGATCACTGATGCT TTAGCGTACCTTCATGAAACAGCTGGTATTACGCACCGTGATTTAAAGGC TGAAAATGTACTTTACCATAGTCCTGGACCCTCTCGAGTCGTTATATCTG ACTTTGGATTTGCATCTTTAAGGGGTCGAGACTCGGTCTTACATACCTTT TGTGGAACACCAGAATACCTGAGTCCAGAGCTTATTTGTAAGCAACAGTA TACGAATAAAGTGGATGTTTGGGCGTTGGGCTGTCTGGTTTATTTCATGC TTTCTGGACACTTACCATGGACTGGATTGGAACTCAGAGACAAGATTGCC ACAGAACCACACAGTTTCTCAGAGCAGATGGGGTGCCCGAATTCAAAAGA CTGTAAAATCAAAAGCCAAGATGGTAAAGTTGTTGACATTGAGTTTTGTG ATTTTCCCAAATCGACTCTTATTGTAAACAAAAGAGTATTGGAAGCTTAT TACGTAAAACTTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00060552-exon-scaffold_344-1575043694:264296..264515 | TCONS_00060552-exon-scaffold_344-1575043694:264296..264515 | Clytia hemisphaerica | exon |
TCONS_00060552-exon-scaffold_344-1575043694:263593..264237 | TCONS_00060552-exon-scaffold_344-1575043694:263593..264237 | Clytia hemisphaerica | exon |
TCONS_00060552-exon-scaffold_344-1575043694:253034..255824 | TCONS_00060552-exon-scaffold_344-1575043694:253034..255824 | Clytia hemisphaerica | exon |
TCONS_00060552-exon-scaffold_344-1510915933:264296..264515 | TCONS_00060552-exon-scaffold_344-1510915933:264296..264515 | Clytia hemisphaerica | exon |
TCONS_00060552-exon-scaffold_344-1510915933:263593..264237 | TCONS_00060552-exon-scaffold_344-1510915933:263593..264237 | Clytia hemisphaerica | exon |
TCONS_00060552-exon-scaffold_344-1510915933:253034..255824 | TCONS_00060552-exon-scaffold_344-1510915933:253034..255824 | Clytia hemisphaerica | exon |
TCONS_00060552-exon-scaffold_344-1491911889:264296..264515 | TCONS_00060552-exon-scaffold_344-1491911889:264296..264515 | Clytia hemisphaerica | exon |
TCONS_00060552-exon-scaffold_344-1491911889:263593..264237 | TCONS_00060552-exon-scaffold_344-1491911889:263593..264237 | Clytia hemisphaerica | exon |
TCONS_00060552-exon-scaffold_344-1491911889:253034..255824 | TCONS_00060552-exon-scaffold_344-1491911889:253034..255824 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_344 | supercontig | scaffold_344:253034..264515 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0004672 | protein kinase activity |
GO:0005524 | ATP binding |
Vocabulary: Biological Process
Term | Definition |
GO:0006468 | protein phosphorylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006468 |
protein phosphorylation |
molecular_function |
GO:0005524 |
ATP binding |
molecular_function |
GO:0004672 |
protein kinase activity |
Blast
BLAST of TCONS_00060552 vs. Swiss-Prot (Human)
Match: KPSH1 (Serine/threonine-protein kinase H1 OS=Homo sapiens GN=PSKH1 PE=1 SV=4) HSP 1 Score: 219.935 bits (559), Expect = 6.175e-62 Identity = 127/300 (42.33%), Postives = 178/300 (59.33%), Query Frame = 2
Query: 182 NKRVLEAYYVKLHIGAGSFSDVFKAEDKKTKMPYAIKRIQIKNENVRDMFVFEAKALRNVSHPNIIKLHDIISTPVCAFIIMDLATGGDLFERIRDNFSNGRRLTVTEARRVTQMITDALAYLHETAGITHRDLKAENVLYHSPGP-SRVVISDFGFASLR--GRDSVLHTFCGTPEYLSPELICKQQYTNKVDVWALGCLVYFMLSGHLPWTG---LELRDKIATEPHSFSEQYWNEVPEEAKSFIDSCLAKTEENRASSSQLLRHQWIKTHKLTAADKINRQRRIS-----LASSRPQ 1048
+ RV Y +K IG GSFS V + E + T+ PYAIK I+ K R++ E + LR V H NII+L ++ T +++M+LATGG+LF+RI S T +A RV QM+ D + YLH GITHRDLK EN+LY+ PG S+++I+DFG AS R G D ++ T CGTPEY++PE++ ++ YTN VD+WALG + Y +LSG +P+ L +I +S+S + W V AK FID L R ++ Q LRH W+ + +++ K N R IS ASSR Q
Sbjct: 91 DPRVTAKYDIKALIGRGSFSRVVRVEHRATRQPYAIKMIETKYREGREVCESELRVLRRVRHANIIQLVEVFETQERVYMVMELATGGELFDRIIAKGS----FTERDATRVLQMVLDGVRYLH-ALGITHRDLKPENLLYYHPGTDSKIIITDFGLASARKKGDDCLMKTTCGTPEYIAPEVLVRKPYTNSVDMWALGVIAYILLSGTMPFEDDNRTRLYRQILRGKYSYSGEPWPSVSNLAKDFIDRLLTVDPGARMTALQALRHPWVVSMAASSSMK-NLHRSISQNLLKRASSRCQ 384
The following BLAST results are available for this feature:
|