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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060547 ID=TCONS_00060547|Name=TCONS_00060547|organism=Clytia hemisphaerica|type=transcript|length=3368bpRun BLAST on NCBI protein sequence of TCONS_00060547-protein >TCONS_00060547-protein ID=TCONS_00060547-protein|Name=TCONS_00060547-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1069bp MGKSKDIVDISSSEESEAEERHHKMKSTVSHMDEEEAISGLDDMERDETSRun BLAST on NCBI transcript from alignment at scaffold_344:117797..143314- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060547 ID=TCONS_00060547|Name=TCONS_00060547|organism=Clytia hemisphaerica|type=transcript|length=25518bp|location=Sequence derived from alignment at scaffold_344:117797..143314- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_344:117797..143314- >TCONS_00060547 ID=TCONS_00060547|Name=TCONS_00060547|organism=Clytia hemisphaerica|type=CDS|length=38520bp|location=Sequence derived from alignment at scaffold_344:117797..143314- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060547 vs. Swiss-Prot (Human)
Match: PRP4B (Serine/threonine-protein kinase PRP4 homolog OS=Homo sapiens GN=PRPF4B PE=1 SV=3) HSP 1 Score: 481.1 bits (1237), Expect = 7.648e-151 Identity = 227/381 (59.58%), Postives = 301/381 (79.00%), Query Frame = 3
Query: 2109 DMFADEGSNMFSENFDSPA--SGGVKAXXXXXXXXXXXXXXXAEGYYKLRVGEMMDGRYNVYGYTGQGVFSNVVRARDTLKANMEVAIKIMRSNEIMSKQGKQEMKILQQLNEADPDDKYHCLRMHRHFDHKQHLCLVFESLSMNLREVLKKYGNNVGLHIKAVRSYTQQMLFALRLLKKCGIIHADIKPDNILVNESKSMLKLCDFGSASSLSDNDITPYLVSRFYRAPEIIIGRKYDTMIDLWSIACTVFEIYSGKILFSGKTNNEMLKLMFDVKGRMPNKVVKKAMFREKHFDESFNFMFIETDKITQKEKFSIINYGTTPSKDLLEMLIGRHNLTDEAKKKRTDKMKSIIGQIWTTDHLLKLTTCTLLW--FIKVKI 3239
DMF E +MF+ FDS + G+ +++ N D+ DAEGYY++ +GE++D RYNVYGYTGQGVFSNVVRARD +AN EVA+KI+R+NE+M K G +E++ L++LN+ADPDDK+HCLR+ RHF HKQHLCLVFE LSMNLREVLKKYG +VGLHIKAVRSY+QQ+ AL+LLK+C I+HADIKPDNILVNESK++LKLCDFGSAS ++DNDITPYLVSRFYRAPEIIIG+ YD ID+WS+ CT++E+Y+GKILF GKTNN MLKL D+KG+MPNK+++K +F+++HFD++ NFM+IE DK+T++EK ++++ P+KDLL LIG L ++ +KK ++K ++ QI D +++ L FI+ KI
Sbjct: 631 DMFT-ESDDMFAAYFDSARLRAAGI-GKDFKENPNLRDNWTDAEGYYRVNIGEVLDKRYNVYGYTGQGVFSNVVRARDNARANQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPLSMNLREVLKKYGKDVGLHIKAVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLCDFGSASHVADNDITPYLVSRFYRAPEIIIGKSYDYGIDMWSVGCTLYELYTGKILFPGKTNNHMLKLAMDLKGKMPNKMIRKGVFKDQHFDQNLNFMYIEVDKVTEREKVTVMST-INPTKDLLADLIGCQRLPEDQRKK-VHQLKDLLDQILMLDPAKRISINQALQHAFIQEKI 1007 The following BLAST results are available for this feature:
BLAST of TCONS_00060547 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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