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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060543 ID=TCONS_00060543|Name=TCONS_00060543|organism=Clytia hemisphaerica|type=transcript|length=519bp
gaaaaactatCGTTACATTTAGAATTTGACATTTaaagagtttttttgaa
aatccctaCAACGGGTCAAAATTTTCAGAGCTTTAATGAtgttttggtta
ttttttgCCCTTCTCTTGCTCATCGATAAAGCATATTGCTCATCATTAGT
GAGCTGGTCAAAACCAGTCAATAGATCCATCGCAAAATTAGTTGATGGTA
AATTGGATCAATATCATTACATTAACATCAAATATGGGAGATTTACGAGA
CAAGCAAAATTTCAGGCTGTATTTCCTGCCATAAAATCTATTATTGAAGA
CTTGAGTGTGAATGAATGCCTTGATAGTTGCAACGATACACCTGGCTGTG
TAATGGTTCTTCACAACACAGGGAATTACAAAGTATGCTCTCTCTTCGAC
AAAACGTGTcgaaatgatgaatttttttgtgtggCTGGAGGCACTCATCA
TACTTTGTACATAAGAAAGAATCCATGCGACGATTCTTCATTGTGCGAAC
ACGGCAGTTTTTGTCGAGC Run BLAST on NCBI protein sequence of TCONS_00060543-protein >TCONS_00060543-protein ID=TCONS_00060543-protein|Name=TCONS_00060543-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
MMFWLFFALLLLIDKAYCSSLVSWSKPVNRSIAKLVDGKLDQYHYINIKY
GRFTRQAKFQAVFPAIKSIIEDLSVNECLDSCNDTPGCVMVLHNTGNYKV
CSLFDKTCRNDEFFCVAGGTHHTLYIRKNPCDDSSLCEHGSFCR Run BLAST on NCBI transcript from alignment at scaffold_344:50577..52128- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060543 ID=TCONS_00060543|Name=TCONS_00060543|organism=Clytia hemisphaerica|type=transcript|length=1552bp|location=Sequence derived from alignment at scaffold_344:50577..52128- (Clytia hemisphaerica)
GAAAAACTATCGTTACATTTAGAATTTGACATTTAAAGAGTTTTTTTGAA
AATCCCTACAACGGGTCAAAATTTTCAGAGCTTTAATGATGTTTTGGTTA
TTTTTTGCCCTTCTCTTGCTCATCGATAAAGCATATTGCTCATCATTAGT
GAGCTGGTCAAAACCAGTCAATAGATCCATCGCAAAATTAGTTGATGGTA
AATTGGATCAATATCATTACATTAACATCAAATATGGGAGATTTACGAGA
CAAGCAAAATTTCAGGCTGTATTTCCTGCCATAAAATCTATTATTGAAGA
CTTGAGTGTGAATGAATGCCTTGATAGTTGCAACGATACACCTGGCTGTG
TAATGGTTCTTCACAACACAGGGAATTACAAAGTATGCTCTCTCTTCGAC
AAAACGTGTCGAAATGATGAATTTTTTTGTGTGGCTGGAGGCACTCATCA
TACTTTGTACATAAGAAAGGTAAACATCAGCATCTTGATGTAAAAAATTT
CGTGTATTAGACAAGGCACGAAGATTTTCTCTTCTTCTTTTATTCGACAA
CAATTTTATGAGAACAACAATTTTATGAGAACAACAAGGCTCAAAATACC
AAAAAAAACTAAACGTCCCAACCCGGTTATTTATTTTTGAAAATATTTTC
AGCCATCATCAAAGACTGGAAGCTCTACATAATCTAGTTTTGGTCCTTAT
CGGGGAAAACTTTGTCGGGGAAAAGTGACGAAATTTTGGCCAAGTGAAGG
AAATTTTCCCCAGCCTTAATGCGTTTACCAACTACAAGCAAGTGACGAAT
ATTTTTCCCCGACGAAAATTTTCCCCGACGAAGTTTTCCCCGACGAAGTT
TTCCCCGATAAGGTAATTAATTACCTTTTTTTTTTGTGTTTTTTTTTTTT
TTGGGGGGGGGGAGCTCAGAGGGAAAACTTTTAAATCCCCCGGTTAAAGC
TCTCCCCTGGTTATTCTATTTTCGAACCAGCCTGCTATTAGGGACCTTAG
AGTAACTCCACCTTGCCATTTAAAATTCACTTTGACACGACAAAGTTTTC
TACATTTTATTTCTTTAAAAAGCGGCACAAACTTTTAATTTTTGTATAAT
TTGGAATTATTACAAACGGTTGGGAATAGTTTTTTTCCAATTAAACGATA
ATCAAATACCAAAGTAATGAACTAGGATTTCAAATACTAATTGAAATATC
TAAGTCGTAAAAATTGGCATAACTTTGGGATTTTTATTAAAAATTGTCTG
GGACACAAAGTAAAGTTTAAAACCATCTCGGCGATTCGCCCCAATATAAC
AGTTATATAATTTTAGTTAGTTAATCATTAATCATGTATCATTTACAGAA
AATTTGAAAAATCCCAAGGAAAAAATGGCAAAACCTAAACCGCGAAAATT
AATTCCCGCGATTGCGATTTTTTTTCGACCACGAAAATTAGTTTCCTTAA
GGTAAGTTAACTGTCAAGCAAATCATTAACATTAACTTCCTTCTAATCTT
AGAATCCATGCGACGATTCTTCATTGTGCGAACACGGCAGTTTTTGTCGA
GC Coding sequence (CDS) from alignment at scaffold_344:50577..52128- >TCONS_00060543 ID=TCONS_00060543|Name=TCONS_00060543|organism=Clytia hemisphaerica|type=CDS|length=864bp|location=Sequence derived from alignment at scaffold_344:50577..52128- (Clytia hemisphaerica)
AATCCATGCGACGATTCTTCATTGTGCGAACACGGCAGTTTTTGTCGAAT
GATGTTTTGGTTATTTTTTGCCCTTCTCTTGCTCATCGATAAAGCATATT
GCTCATCATTAGTGAGCTGGTCAAAACCAGTCAATAGATCCATCGCAAAA
TTAGTTGATGGTAAATTGGATCAATATCATTACATTAACATCAAATATGG
GAGATTTACGAGACAAGCAAAATTTCAGGCTGTATTTCCTGCCATAAAAT
CTATTATTGAAGACTTGAGTGTGAATGAATGCCTTGATAGTTGCAACGAT
ACACCTGGCTGTGTAATGGTTCTTCACAACACAGGGAATTACAAAGTATG
CTCTCTCTTCGACAAAACGTGTCGAAATGATGAATTTTTTTGTGTGGCTG
GAGGCACTCATCATACTTTGTACATAAGAAAGAATCCATGCGACGATTCT
TCATTGTGCGAACACGGCAGTTTTTGTCGAATGATGTTTTGGTTATTTTT
TGCCCTTCTCTTGCTCATCGATAAAGCATATTGCTCATCATTAGTGAGCT
GGTCAAAACCAGTCAATAGATCCATCGCAAAATTAGTTGATGGTAAATTG
GATCAATATCATTACATTAACATCAAATATGGGAGATTTACGAGACAAGC
AAAATTTCAGGCTGTATTTCCTGCCATAAAATCTATTATTGAAGACTTGA
GTGTGAATGAATGCCTTGATAGTTGCAACGATACACCTGGCTGTGTAATG
GTTCTTCACAACACAGGGAATTACAAAGTATGCTCTCTCTTCGACAAAAC
GTGTCGAAATGATGAATTTTTTTGTGTGGCTGGAGGCACTCATCATACTT
TGTACATAAGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060543-exon-scaffold_344-1575043694:51660..52128 | TCONS_00060543-exon-scaffold_344-1575043694:51660..52128 | Clytia hemisphaerica | exon |
| TCONS_00060543-exon-scaffold_344-1575043694:50577..50626 | TCONS_00060543-exon-scaffold_344-1575043694:50577..50626 | Clytia hemisphaerica | exon |
| TCONS_00060543-exon-scaffold_344-1510915933:51660..52128 | TCONS_00060543-exon-scaffold_344-1510915933:51660..52128 | Clytia hemisphaerica | exon |
| TCONS_00060543-exon-scaffold_344-1510915933:50577..50626 | TCONS_00060543-exon-scaffold_344-1510915933:50577..50626 | Clytia hemisphaerica | exon |
| TCONS_00060543-exon-scaffold_344-1491911889:51660..52128 | TCONS_00060543-exon-scaffold_344-1491911889:51660..52128 | Clytia hemisphaerica | exon |
| TCONS_00060543-exon-scaffold_344-1491911889:50577..50626 | TCONS_00060543-exon-scaffold_344-1491911889:50577..50626 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_344 | supercontig | scaffold_344:50577..52128 - |
Blast
The following BLAST results are available for this feature:
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