TCONS_00060541 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060541
Unique NameTCONS_00060541
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length863

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060541 ID=TCONS_00060541|Name=TCONS_00060541|organism=Clytia hemisphaerica|type=transcript|length=863bp
AGGAGAAGACACTTCAAGTATTTTAAGTAAAGACCAAACAGATCCAGACA
TTTGGTCAGGAAAAAAAGCATCATGtacacaaataaaaaaaaattatggc
aGTACTGCAGCGAGAGAATGGATTCACCCGTGGCGTGATTCGAGAAGAGT
CAAAGTCAACTGTGCAGGTGATCAAATGTATATGGCACAAACTTCAAAAC
TGACAGAAGCCGGTATTCCTGTCATCACGGAAATCCCGGAGTTGTATGAC
GGACTGGAATTTCcagacaataatttcaaaatgggGCGCAAAGCAATTGA
ACAATATTATAAATTAATCAGATATTTCACATTCATGTCGGACGTAAGGC
CAGCTGCGTGTCAATGGTATGGTTGGGGGAGCGACGACTTTGATTGTACA
GAACATGTTGATGGTAGATTTTCCTCACCGTACATTAACTCTGATGACCG
GCTCTATGATCGTATTTATAACCGGACGAATGGGGAAACCTATTCATTTC
ACGGTGACCATTGGGCATGTTTCGGTCCCAGTAAACCTATCCTAGATCCT
GATATCAGTTTTGATATTCGAGAGTTTTCATAGAACACCCGAAGAAATCT
GAAACACCAAAAGGGATCACTAATagatttttaaataagagtgatatcgt
ttgattactcatcaattttaattcatttcACATTGttttgacacgaatgt
ggagcaagataaaaataaaaacatattttgcttatatcagcacaatatga
CAATGGGCAGACACTGTACTGATATggaacatgtgtctgatatgaaacgg
ggacACTTATGTAAAACTTTAAGTCCTTAGCCAGCCCTGCTACAAAATGA
TGCATTTATCTAG
Run BLAST on NCBI

transcript from alignment at scaffold_344:45384..49987-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060541 ID=TCONS_00060541|Name=TCONS_00060541|organism=Clytia hemisphaerica|type=transcript|length=4604bp|location=Sequence derived from alignment at scaffold_344:45384..49987- (Clytia hemisphaerica)
AGGAGAAGACACTTCAAGTATTTTAAGTAAAGACCAAACAGATCCAGGTA
AATGGCTTTCCAAATCTTATCCATTTTAATACAAAGAGACTGAAGAAGAA
ATTCGACCTTTAAAAGTTTCTCACTCGTCTGTGTTGTAAACAGACCCGAT
ATCCACAGAAAGTTTAACAATACACCTTTTTCCGGTTAGCCGTTTCGTAT
AAAAAGTCACCAAAATTTCGAGTAAACAAACTGATTGGCTAAAAAGGCAA
AAACATAAACAAAAAAATGTACGAGGAAAATGTGCTTTCTGTGCTCTTAC
TCTGGACATTTTTTTGTTTATGTTTTTGCTTTCTTTTAGCCAATGAGATG
GTTTGTTTACTCGAAATTTTGGTGACTTTTTATACGAAGCAGCTAACCGT
AAAAAGGTGTATTAATTTCCGTATTACGCAACGCTTTAATCGATTTTGAT
ACGATTGCAGTGGTAAATTGAAAGCCCGCCCCCTAGTCAGACTTTTCCAA
ACAATTCGAACGATTTTTCACCCAAAATTCCCCTGTTCCCCGAAAAATCT
CTGTGTGAATGTGCGAGTCCAAGAAACATTTACGTGGCTGCATGGATTTA
AAATCCAAGTTGGCTAACCATGGATTAATAATAATAAAAAAAACGAAAAG
CTTCCGTTAAAAAAAATGATTTAAGTTAAGTCCGTCTCAATATAATTTAC
AGTGGAGACAATAAAAGCTATAACTTTTGATAAAATTCCAATTAGATATG
TAGCGGTTTTGTGCTTGTACAGGAGTGGAATATTATGATAAAAAAAAAAT
TCAAAAAAGATCGGAAAATGAAGATCGAAAACGAAAAAGAATAAATCAAC
TTCTTCAATAATTGTGCTATAATTATCATTTTCACACGAGTGACTCTTTG
ATCTTAGAGCATAATGTGAAAACGTTTTTTCAAGAATTTATTCCATCGAA
AAATATAGTCCACAGTTTATCATTGATTGACTTTAAAAACCATTAAAAAA
CAACAAAAAAAGAGCCCTTTTTAAGTCAACCAGGGCAAAGTTTTAAGCTG
TATTTTTTGACTGAATGAATATATTTCTTTTTTACATTTATGATGTTTTA
AATTTTTTTGATTTCACGTTTTTAATTTCTGATATAAAAATGAAGATCAT
AGCATTATTCTACAAGAAGTTGATTTTCTTCTTCTTCATTTTTCATCTTC
GTTTTTCCATTTTTTTCCATTTTTTTCTTTTTTAAATGATATTCCACTCC
GGATTATCTTTTCGACGAGCACAAAACCGCTATCTAATTCGAATTCTATC
AAAAGTGACAACTTTTTTTGTCTCCGCTGCAAATTATATTGAGACAGACG
TTAGAAGAAATTAGTTTTAATTAAAATCTATTTCAAGTTTAAATTTAATA
ATCTTTTGCTTGATGCTGTTTTGTCCGACATATCACACAATGAAATAGCA
AAAATATTTGCTGAAATGTTTTTCGTTTTGGTAAGTTTTCATCTCATCGC
ATNAAAATATTTGCTGAAATGTTTTTCGTTTTGGCAAGTTTCCATCTCAT
CGCATTTCAAATCGATTTCTTTTACTAGACATTTGGTCAGGAAAAAAAGC
ATCATGTACACAAATAAAAAAAAATTATGGCAGTACTGCAGCGAGAGAAT
GGATTCACCCGTGGCGTGATTCGAGAAGAGTCAAAGTCAACTGTGCAGGT
ATGTACATTTAAGATTTCACTACAAAGTCAACTGTGCAGGTGTATACATT
TTAGTCTTTACTACAAAGTCAACTGTGCAGGTATATACATTTTAACTTTA
GACTTTACGACTTTTTGCGTGAACCTGTCAAATTTTTACATTAATTTGTT
CATCTTCCGTCTTGGATCTTGTGACGTTTCAACCTTATTTTGTCAAAGAA
AGAAGCTTCATAAAGCCTGGCTAACAGCGTTGAGAAAAAGCACGAACCTT
AAACTTCCGGGGGTTTTTGCGGAAATTAGGTCGCAAAGGAAATTTAGAAA
GATATTATCAATCCGCGAAATATTCATAAATTTATTTCAATACTCAAGAA
AATATGGCAATGACGAGACCTCATGGGAATTCTACGTTTCAACCTCCTAT
TATCTTGGAACTAATTTTCGTGGGAACTAATTTTCGCGGTCGAAAAAAAA
TATCTGAAAAATTGCATTTCGCGGGTTTTAATTTTCGCGGTTTTTTTTCA
TTCTGGAATTTTCGCGGGCTTTAATTTTCGCGGTTTTGTCCTTTTTTGGA
CAAATTTCGTTCATTTTCCTAGGGATTTTTCAAATTTTTCGATAAAGTTG
GAAAAAATTGTATTTCGCAGGAATCAATTTTCGCGGTTTTTAGCTCTCAA
AATTTTTCGCGGGCTAAAATTTTCGCTATTTTGACGAAAAACCGCGAAAA
ACACTAAAATTAATTCCCGTGAAAATTAGTTCCAATAAGGTACTTGTCTC
TATAGAACAGCTTTTGTGAACGTTTTTGAACCTTAATTCCTTTGGGAAAT
CAAAATCGTTTTAAAACCAATGAATTTTTTAGAAACTTCACCATTAGCTA
CTGAACCGTTTATGTGTAACCTGAGATCAGATTGTGAATGTTTTCTGCAC
ACCACGCTGAAGCTCTAAAGGGATGTGTGAAAACAAACAATCTGACGAAT
ATGCAATCTCGAAATCGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCA
AGAATCTTGTTGTGCGCCGGAAAAATAAAAACTGATACGGCGCCCTATTC
ATAAACACAATCGCGCAACTTTGTTGTCATTCCCAGCCCTTTTAGACGAG
CGCGATCCTTACGATTTCGAGATTGCATATTCGTCAGATTGTTTGTTTTC
ACACATCCCTTTAGAGCTTCAGCGTGGTGTGAAGATAACATTCACAATCT
GATCTCAGGTTACATTTGTGTGTCTCTCTCTTTTGTCCCTGGGACAAATC
ATCGTGTCTTTTGGGTATTCCCCTCCCTTTCTGTCCCATGAAAAAATAAA
AGTAACCATGGGACACGCACTTTTTTTGTGTTGGTGGGATGGAGCATGTT
GCATTGCACCAACGCGACTAAAACTTCTCATGTCCCCAAGCCTTAACAAT
GTGTATTTCAACAACCAAAATGCATGATTTGACAGTAAAAAGTCACAAAT
TCGTGAAAATACTGTCACCCAATAAGTGCCATCCGCCAAATTAAGTCGGT
TGAGCTCAACTGCAAAATTTAATACCCTCGAAAATTAATCCCATTAAAGT
AGCTCCTAAATTCCATTAAATTCCAAATGATCCTACATTTACTTTAGGTG
ATCAAATGTATATGGCACAAACTTCAAAACTGACAGAAGCCGGTATTCCT
GTCATCACGGAAATCCCGGAGTTGTATGACGGACTGGAATTTCCAGACAA
TAATTTCAAAATGGGGCGCAAAGCAATTGAACAATATTATAAATTAATCA
GGTTTACCAAGTATCGATTTGGATGTTTCAACGGATCTATATATTCAGAT
TTCATTTTTAGTCGACACAATTATCAAAAGTAAGTATCACAGTCAAATTT
ATCAAACCGTTATATGAACAAATCTTCATCTAGAACTCTCCATAACTCAG
ACAAATTTTAATTTCCCGTGTGTGTTCGAGTTATTGAGCAGGCTCCACTC
TATTCCCACACAATTTAATAAGCGACGGGGGATTATAAATTAGGGCGTAA
GAGTAATTAATTATTCTTTTAAGTGAAACGTAAAGGCCTTGTGATGTGCA
ACCAAATCAAAATAAAACATAAAACATTTTTCTTTAAACAATACATTTCA
TTATTCTTTTAGATATTTCACATTCATGTCGGACGTAAGGCCAGCTGCGT
GTCAATGGTATGGTTGGGGGAGCGACGACTTTGATTGTACAGAACATGTT
GATGGTAGATTTTCCTCACCGTACATTAACTCTGATGACCGGCTCTATGA
TCGTATTTATAACCGGACGAATGGGGAAACCTATTCATTTCACGGTGACC
ATTGGGCATGTTTCGGTCCCAGTAAACCTATCCTAGATCCTGATATCAGT
TTTGATATTCGAGAGTTTTCATAGAACACCCGAAGAAATCTGAAACACCA
AAAGGGATCACTAATAGATTTTTAAATAAGAGTGATATCGTTTGATTACT
CATCAATTTTAATTCATTTCACATTGTTTTGACACGAATGTGGAGCAAGA
TAAAAATAAAAACATATTTTGCTTATATCAGCACAATATGACAATGGGCA
GACACTGTACTGATATGGAACATGTGTCTGATATGAAACGGGGACACTTA
TGTAAAACTTTAAGTCCTTAGCCAGCCCTGCTACAAAATGATGCATTTAT
CTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038082XLOC_038082Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060541-exon-scaffold_344-1575043694:49941..49987TCONS_00060541-exon-scaffold_344-1575043694:49941..49987Clytia hemisphaericaexon
TCONS_00060541-exon-scaffold_344-1575043694:48290..48409TCONS_00060541-exon-scaffold_344-1575043694:48290..48409Clytia hemisphaericaexon
TCONS_00060541-exon-scaffold_344-1575043694:46287..46440TCONS_00060541-exon-scaffold_344-1575043694:46287..46440Clytia hemisphaericaexon
TCONS_00060541-exon-scaffold_344-1575043694:45384..45925TCONS_00060541-exon-scaffold_344-1575043694:45384..45925Clytia hemisphaericaexon
TCONS_00060541-exon-scaffold_344-1510915933:49941..49987TCONS_00060541-exon-scaffold_344-1510915933:49941..49987Clytia hemisphaericaexon
TCONS_00060541-exon-scaffold_344-1510915933:48290..48409TCONS_00060541-exon-scaffold_344-1510915933:48290..48409Clytia hemisphaericaexon
TCONS_00060541-exon-scaffold_344-1510915933:46287..46440TCONS_00060541-exon-scaffold_344-1510915933:46287..46440Clytia hemisphaericaexon
TCONS_00060541-exon-scaffold_344-1510915933:45384..45925TCONS_00060541-exon-scaffold_344-1510915933:45384..45925Clytia hemisphaericaexon
TCONS_00060541-exon-scaffold_344-1491911889:49941..49987TCONS_00060541-exon-scaffold_344-1491911889:49941..49987Clytia hemisphaericaexon
TCONS_00060541-exon-scaffold_344-1491911889:48290..48409TCONS_00060541-exon-scaffold_344-1491911889:48290..48409Clytia hemisphaericaexon
TCONS_00060541-exon-scaffold_344-1491911889:46287..46440TCONS_00060541-exon-scaffold_344-1491911889:46287..46440Clytia hemisphaericaexon
TCONS_00060541-exon-scaffold_344-1491911889:45384..45925TCONS_00060541-exon-scaffold_344-1491911889:45384..45925Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_344supercontigscaffold_344:45384..49987 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.182012	0	0.285117	0	0	0	0.274799	0	0	0	0	0	0	0.210183	0.362209	0.377542	0.245954	0	0	0	0	0.257401	0.0743838	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060541 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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