TCONS_00060540 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060540
Unique NameTCONS_00060540
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length185

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060540 ID=TCONS_00060540|Name=TCONS_00060540|organism=Clytia hemisphaerica|type=transcript|length=185bp
ACGCAATTGCGGAACAGTGGGACGTGTGGCAATTTCTAACTTCTTGATCG
AATAATACAGTAAGATCTGTGGCGTGAAATACAAAAAGCAAAATCTGTGA
TCCAAGTTTTTTCTACGATGCATTCAAGaaaaatgatgtttttgtggCTG
TCAATGATTTGTATGTCGTATTTGTCGATTGCCGT
Run BLAST on NCBI

transcript from alignment at scaffold_344:337969..338511+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060540 ID=TCONS_00060540|Name=TCONS_00060540|organism=Clytia hemisphaerica|type=transcript|length=543bp|location=Sequence derived from alignment at scaffold_344:337969..338511+ (Clytia hemisphaerica)
ACGCAATTGCGGAACAGTGGGACGTGTGGCAATTTCTAACTTCTTGATCG
AATAATACAGTAAGATCTGTGGCGTGAAATACAAAAAGCAAAATCTGTGA
TCCAAGTTTTTTCTACGATGCATTCAAGGTGAGTACTGTACTTGGAGATT
TTTTTGATAtgatttttcataattatcaagaaaattaagaaattacAATC
TAATAGAACACCCTTGTGTcacatgtttaaaaattgcactccaataCCAT
CCCGACTGGATGTTTTAACCCTTGAACAATATAATtcctatccccattgg
gatttttaTATCCGCTGGGGAACTGAGGAGAAAAGTTTTACCGGGGGCGG
ACTGTGAGACAAGGGTGTAATAGAAGGTTCTGAAATAGACAAAACTTATA
AAGCATCAACAGTTTAATGTTTCATGGCGGATTGGGACTTATCACTTAGG
GGGCAAATGTACGATATTTTGTGcttgtttttttagaaaaatgatgtttt
tgtggCTGTCAATGATTTGTATGTCGTATTTGTCGATTGCCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038081XLOC_038081Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060540-exon-scaffold_344-1491911889:337969..338096TCONS_00060540-exon-scaffold_344-1491911889:337969..338096Clytia hemisphaericaexon
TCONS_00060540-exon-scaffold_344-1510915933:337969..338096TCONS_00060540-exon-scaffold_344-1510915933:337969..338096Clytia hemisphaericaexon
TCONS_00060540-exon-scaffold_344-1575043694:337969..338096TCONS_00060540-exon-scaffold_344-1575043694:337969..338096Clytia hemisphaericaexon
TCONS_00060540-exon-scaffold_344-1491911889:338455..338511TCONS_00060540-exon-scaffold_344-1491911889:338455..338511Clytia hemisphaericaexon
TCONS_00060540-exon-scaffold_344-1510915933:338455..338511TCONS_00060540-exon-scaffold_344-1510915933:338455..338511Clytia hemisphaericaexon
TCONS_00060540-exon-scaffold_344-1575043694:338455..338511TCONS_00060540-exon-scaffold_344-1575043694:338455..338511Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_344supercontigscaffold_344:337969..338511 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060540 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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