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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060527 ID=TCONS_00060527|Name=TCONS_00060527|organism=Clytia hemisphaerica|type=transcript|length=1844bpRun BLAST on NCBI protein sequence of TCONS_00060527-protein >TCONS_00060527-protein ID=TCONS_00060527-protein|Name=TCONS_00060527-protein|organism=Clytia hemisphaerica|type=polypeptide|length=494bp MNSKKQIRIPSGKSGRSQEDEKSTKKPVSTKSKTGNASSIKRPGQTKASLRun BLAST on NCBI transcript from alignment at scaffold_344:65813..73829+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060527 ID=TCONS_00060527|Name=TCONS_00060527|organism=Clytia hemisphaerica|type=transcript|length=8017bp|location=Sequence derived from alignment at scaffold_344:65813..73829+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_344:65813..73829+ >TCONS_00060527 ID=TCONS_00060527|Name=TCONS_00060527|organism=Clytia hemisphaerica|type=CDS|length=22275bp|location=Sequence derived from alignment at scaffold_344:65813..73829+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060527 vs. Swiss-Prot (Human)
Match: FBX15 (F-box only protein 15 OS=Homo sapiens GN=FBXO15 PE=2 SV=2) HSP 1 Score: 103.219 bits (256), Expect = 3.804e-23 Identity = 105/459 (22.88%), Postives = 200/459 (43.57%), Query Frame = 2
Query: 239 VPNEALHCIFKYLTFSDLLRCNCVCKAWKDVAEIQSLWHKVFRFLPKPCQELSTKAKTTGCKDWK---------KEALFCVKERRQNYYKKLMSSNQLHSRKKKRA-----------------EATRTLGTRWLLEIQEKGPSKPHQYFADE-DFIFSFHNLTARWNNMNDVPSLSKVKSISLYAVTPLLFDENMKPIENSICTRSLLASHRFRDHPLKSMKLVHQDKELTFYSLNQTLYFAVWSSSLPKDGDIAFVGMTTTIENLLLKTQEGSSNRVWSAPPHQVIPDDVNPSYGLHGYSVRICLRNSRKTFYENEYS--FHKNGRWEDDWLSFIHQTIENPLYDDFYYDIKEQIKFSWKSGPINGRIDNLMILDVQLKDMNEELIWDSSELVLMKETEEDTDFSNYI--VYEMTTEESHRKTLIRVLQDPXXXXXXXXXXXXXXRKSVINEWFGTKY 1522
+P+E L IF YL LL CV + + +A +W ++ P + +WK + V+++ Y+KK + Q+ S K A EA R G W + ++EKG +Y + D + ++T W P L+ + ++ L +TP+ D P ++ + SL+A + + +M + D+ + + L+ L VW K+ ++AFV +L+ ++ GS+ + PPH DD +P YGLHGY + + L + + + F K G E+ + I ++N + + + ++ SWK+ +G I + ++DV L D + + W S V ++ +D S+++ Y + ++ + + ++ ++E LI++L ++L + IN WFGT+Y
Sbjct: 77 MPSEILLKIFSYLDAVSLLCTGCVSRRFYHLANDNFIWIGIYSTAFSPARS-----------NWKFNSVEKIAMSMSFLSVQDKEAGYWKKEYITKQIASVKAALADILKPVNPYTGLPVKTKEALRIFGLGWAIILKEKGGK---EYIMEHVDLSINDTSVTVIWYG-KKWPCLASLSTLDLCGMTPVFTDWYKTPTKHRLRWHSLIAKYNLSHLTISTM--IGCDRLIRIFCLHPGLLVGVWK----KEEELAFVMANLHFHHLVERSTLGSATIPYELPPHSPFLDD-SPEYGLHGYQLHVDLHSGGVFYLCGTFRNLFTKRGNIENGHVKLIVIHLKN---NREHLPLIGKVGLSWKTDIFDGCIKSCSMMDVTLLDEHGKPFWCFSSPVCLRSPATPSDSSSFLGQTYNVDYVDAEGRVHVELVWIRETEEYLIVNLVLYLSIAKINHWFGTEY 510 The following BLAST results are available for this feature:
BLAST of TCONS_00060527 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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