|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060515 ID=TCONS_00060515|Name=TCONS_00060515|organism=Clytia hemisphaerica|type=transcript|length=2631bp
TTTCCATGCAAAGTTACTTTATTCTAACAAATTGTTACATAGCTACAGTA
AAAAGTAAATCTAATAATATAAGGGCGAAAATTAGATAATAACTTTTTGG
GAAGATTTCAAAATCCGACCTTGCCGCAGAAATCAACAATTTTATAAAGC
TATCTGAACAAAAAGCCTAATCAATATGTGATACTAGACTGGACGAGGAG
CAAAATCGTAAATCCTAGAGAGCTAATTTTGACGAAAACAAGGCTAAAAA
TTCGGCTTTTGTTCATTTGTTCagttaaaaatgaagaaagattTAAGGAT
GTGATTCTAGAAATTTCCCAATCAAGGTCTCAAAACAAGAAGTTTGTGAC
ACACCCATACCCCAAACAAACAAATTCATAATAGAAAATAAAACATGCTA
AAATTAAAATGATAAATACAGactttctataactcgaacataACTTATCG
TAAAACTTGTTCGACTTAGAGATATTCAAGTTACAGAGTTTCTATTTTAA
AGGGACTCTACAAAAGTTAGTAAATGACAAAGTAAAGTATAAACTAAATT
ACCTTAAAAAGCGTTTAGGAAGGGGGCCTTATGAAATCATATGAAATTCA
ATCTATTCCATAAAGGGCGGTGACCGCCCATTTCCCTGACTGACTTTTCC
CCAACAGACATTTCCCTGACTGACTTTTCCCCGACACACAATTCCCTGAC
ACACAATTCCCCGACTGACTTTTTTCTACAGAATCGTCCGGTAATCAAAA
ACTGATTCCTTTTTTTGAAAGACCTACCAATATACGTAGCCTTTTAGGAA
TTAGGTGCCTAATGAATGGACAAAAGCTCTGAATCTACCATATCGTCTGT
TAAACCTAAAGAATTCTTTAAATGTAGTATAGATTTTATTTGAATATAAT
ATAATTTAAATATAGTGTCAACTTTCCTAAACAGACTGTATTAGACCTTT
GGTGTACAGCATCCTTTCGCTTTACTCGTTAGTGTAAAATTCATCAACAT
TTTTCTCACCGCCTTCAGCATATTGGGAATCCATTTCGATCGCCATCTCA
TCTTTGACTTGTCGACGACGACGCTCATAATTTTTACTACGCATACGCTT
CCAATCTTTCTGGGCACCATACCTCTCATCTTGGTATTCCATTTCATCTC
TCTTTGATAATTTGATCACGTGTAAAGCTTTCCAAGATGGTAAAAGATCA
AGGAGCGAACCTTGCCAATAATTATCAACTGATTCTTTCAATTTTGCTAC
ATAGTCGTGATCTCCGTGTAATCTTTTCAGAGCGATCCACTTTCCACCAT
CCTCCCAATTTTTCTTGATCTCCCAGTTTTGATTGGTCTCATACCATTGA
TAACCCCACTTGTCAAGGTTGTAATGTCTGTCCATTCTCACAAAAACATC
TTTGCCACATTTATGACTTGCTATATCAGCTCCATCGAATACACAAGTGC
ATGCGAGCTTGTTTTCCACATGCGTTGAGCTGGTCCACCAACCTTCCCAC
TGTTCATTGGTTTTACAATTGAGAGTTTTATTACAATAGTCCCTACCATA
ATGCATCTTTTTAATCATAGAAACTGCATTTTGGGCGTACCTGGTTGACC
AACGAATTTCATTATTCAAATCTTCTGCGTAtcggtgaaactttttcttc
aTTGCTGGTAACTCTGCATAGGTGGCTGTTAAAGCAGAGATACTACCCAA
GCAAAGAATTACATAGTCACGAAATGTTATTAAGCTTGTTTCGATCCTTT
TAGTATCATAAACAGGGAGTTCTTTATTCGCTTGAACTTGGTTTGAAAAG
AGAGCGAATTTCGGTCGCGCCGCCATGATGTCCTTAACAGCGTCCTCCTG
GCATTCATTGACTTCGATTTCTGAAACTTCCTTCAAACAGTTTCCCCACA
TTTTGAACAAAGACTTGTATTCTCGACTGATCAAATCCTTCTCCAGATGG
ATTGTCTTTTGGTCGACATATCCTTTCATTTCGTCCAATCGCTCGTTTAC
TTCATCCGTTAATTTTTCGATAGCTTTGTTGGCTTGGTCCAAAATATCTT
GAGGTGAAGGTGAAGTGAATGCGTCAAGGACCGCCAAACCAATCCCAAAG
GCTCCCAATGCACCGCTCAACTTGGATGCAAACTTAGACACTTTTTGGAT
AGTTTCAATTCCTTGTAGAATCATACCACCATTATCAACTGCATCAACCA
ATGTACCAAGATTAGCTGTAAGTCCAGAAAGAACATCTTGTTCCATTTTC
GCCACCGGTGCAATGATCTTCTGAACTATGACTTTATTTCCTCCTGGTGC
ATAACCTTTGAATTCGCAATAAGCATCTGATGTATTTAAGTACCTTGCAT
AGAAACGTCCAGGTTGTTCAAGTGCCTTGGTGAGTTcctcaaaaaaattg
aaggaaatAACCTGGGTGGGACTTGCGAGTATGAACAGCAGCGAAATTAC
CTTTAAATACATTTTTATGGAATGGATATCTaagaaagaaaataatcaaT
AAGTTTACCTCCACCAAACCCTATCATTATGTTGAGAAGGCCATTTTAGA
ATTTCAGAATTAGTACCCCAGTGATGCCTGATTAGAAAAGTAATTTCGAG
TAGACAAGGTTCTCTATTTTTCGAatagaaa Run BLAST on NCBI protein sequence of TCONS_00060515-protein >TCONS_00060515-protein ID=TCONS_00060515-protein|Name=TCONS_00060515-protein|organism=Clytia hemisphaerica|type=polypeptide|length=496bp
MYLKVISLLFILASPTQVISFNFFEELTKALEQPGRFYARYLNTSDAYCE
FKGYAPGGNKVIVQKIIAPVAKMEQDVLSGLTANLGTLVDAVDNGGMILQ
GIETIQKVSKFASKLSGALGAFGIGLAVLDAFTSPSPQDILDQANKAIEK
LTDEVNERLDEMKGYVDQKTIHLEKDLISREYKSLFKMWGNCLKEVSEIE
VNECQEDAVKDIMAARPKFALFSNQVQANKELPVYDTKRIETSLITFRDY
VILCLGSISALTATYAELPAMKKKFHRYAEDLNNEIRWSTRYAQNAVSMI
KKMHYGRDYCNKTLNCKTNEQWEGWWTSSTHVENKLACTCVFDGADIASH
KCGKDVFVRMDRHYNLDKWGYQWYETNQNWEIKKNWEDGGKWIALKRLHG
DHDYVAKLKESVDNYWQGSLLDLLPSWKALHVIKLSKRDEMEYQDERYGA
QKDWKRMRSKNYERRRRQVKDEMAIEMDSQYAEGGEKNVDEFYTNE Run BLAST on NCBI transcript from alignment at scaffold_343:122689..125319 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060515 ID=TCONS_00060515|Name=TCONS_00060515|organism=Clytia hemisphaerica|type=transcript|length=2631bp|location=Sequence derived from alignment at scaffold_343:122689..125319 (Clytia hemisphaerica)
tttctatTCGAAAAATAGAGAACCTTGTCTACTCGAAATTACTTTTCTAA
TCAGGCATCACTGGGGTACTAATTCTGAAATTCTAAAATGGCCTTCTCAA
CATAATGATAGGGTTTGGTGGAGGTAAACTTAttgattattttctttctt
AGATATCCATTCCATAAAAATGTATTTAAAGGTAATTTCGCTGCTGTTCA
TACTCGCAAGTCCCACCCAGGTTatttccttcaatttttttgaggAACTC
ACCAAGGCACTTGAACAACCTGGACGTTTCTATGCAAGGTACTTAAATAC
ATCAGATGCTTATTGCGAATTCAAAGGTTATGCACCAGGAGGAAATAAAG
TCATAGTTCAGAAGATCATTGCACCGGTGGCGAAAATGGAACAAGATGTT
CTTTCTGGACTTACAGCTAATCTTGGTACATTGGTTGATGCAGTTGATAA
TGGTGGTATGATTCTACAAGGAATTGAAACTATCCAAAAAGTGTCTAAGT
TTGCATCCAAGTTGAGCGGTGCATTGGGAGCCTTTGGGATTGGTTTGGCG
GTCCTTGACGCATTCACTTCACCTTCACCTCAAGATATTTTGGACCAAGC
CAACAAAGCTATCGAAAAATTAACGGATGAAGTAAACGAGCGATTGGACG
AAATGAAAGGATATGTCGACCAAAAGACAATCCATCTGGAGAAGGATTTG
ATCAGTCGAGAATACAAGTCTTTGTTCAAAATGTGGGGAAACTGTTTGAA
GGAAGTTTCAGAAATCGAAGTCAATGAATGCCAGGAGGACGCTGTTAAGG
ACATCATGGCGGCGCGACCGAAATTCGCTCTCTTTTCAAACCAAGTTCAA
GCGAATAAAGAACTCCCTGTTTATGATACTAAAAGGATCGAAACAAGCTT
AATAACATTTCGTGACTATGTAATTCTTTGCTTGGGTAGTATCTCTGCTT
TAACAGCCACCTATGCAGAGTTACCAGCAAtgaagaaaaagtttcaccga
TACGCAGAAGATTTGAATAATGAAATTCGTTGGTCAACCAGGTACGCCCA
AAATGCAGTTTCTATGATTAAAAAGATGCATTATGGTAGGGACTATTGTA
ATAAAACTCTCAATTGTAAAACCAATGAACAGTGGGAAGGTTGGTGGACC
AGCTCAACGCATGTGGAAAACAAGCTCGCATGCACTTGTGTATTCGATGG
AGCTGATATAGCAAGTCATAAATGTGGCAAAGATGTTTTTGTGAGAATGG
ACAGACATTACAACCTTGACAAGTGGGGTTATCAATGGTATGAGACCAAT
CAAAACTGGGAGATCAAGAAAAATTGGGAGGATGGTGGAAAGTGGATCGC
TCTGAAAAGATTACACGGAGATCACGACTATGTAGCAAAATTGAAAGAAT
CAGTTGATAATTATTGGCAAGGTTCGCTCCTTGATCTTTTACCATCTTGG
AAAGCTTTACACGTGATCAAATTATCAAAGAGAGATGAAATGGAATACCA
AGATGAGAGGTATGGTGCCCAGAAAGATTGGAAGCGTATGCGTAGTAAAA
ATTATGAGCGTCGTCGTCGACAAGTCAAAGATGAGATGGCGATCGAAATG
GATTCCCAATATGCTGAAGGCGGTGAGAAAAATGTTGATGAATTTTACAC
TAACGAGTAAAGCGAAAGGATGCTGTACACCAAAGGTCTAATACAGTCTG
TTTAGGAAAGTTGACACTATATTTAAATTATATTATATTCAAATAAAATC
TATACTACATTTAAAGAATTCTTTAGGTTTAACAGACGATATGGTAGATT
CAGAGCTTTTGTCCATTCATTAGGCACCTAATTCCTAAAAGGCTACGTAT
ATTGGTAGGTCTTTCAAAAAAAGGAATCAGTTTTTGATTACCGGACGATT
CTGTAGAAAAAAGTCAGTCGGGGAATTGTGTGTCAGGGAATTGTGTGTCG
GGGAAAAGTCAGTCAGGGAAATGTCTGTTGGGGAAAAGTCAGTCAGGGAA
ATGGGCGGTCACCGCCCTTTATGGAATAGATTGAATTTCATATGATTTCA
TAAGGCCCCCTTCCTAAACGCTTTTTAAGGTAATTTAGTTTATACTTTAC
TTTGTCATTTACTAACTTTTGTAGAGTCCCTTTAAAATAGAAACTCTGTA
ACTTGAATATCTCTAAGTCGAACAAGTTTTACGATAAGTtatgttcgagt
tatagaaagtCTGTATTTATCATTTTAATTTTAGCATGTTTTATTTTCTA
TTATGAATTTGTTTGTTTGGGGTATGGGTGTGTCACAAACTTCTTGTTTT
GAGACCTTGATTGGGAAATTTCTAGAATCACATCCTTAaatctttcttca
tttttaactGAACAAATGAACAAAAGCCGAATTTTTAGCCTTGTTTTCGT
CAAAATTAGCTCTCTAGGATTTACGATTTTGCTCCTCGTCCAGTCTAGTA
TCACATATTGATTAGGCTTTTTGTTCAGATAGCTTTATAAAATTGTTGAT
TTCTGCGGCAAGGTCGGATTTTGAAATCTTCCCAAAAAGTTATTATCTAA
TTTTCGCCCTTATATTATTAGATTTACTTTTTACTGTAGCTATGTAACAA
TTTGTTAGAATAAAGTAACTTTGCATGGAAA Coding sequence (CDS) from alignment at scaffold_343:122689..125319 >TCONS_00060515 ID=TCONS_00060515|Name=TCONS_00060515|organism=Clytia hemisphaerica|type=CDS|length=1491bp|location=Sequence derived from alignment at scaffold_343:122689..125319 (Clytia hemisphaerica)
ATGTATTTAAAGGTAATTTCGCTGCTGTTCATACTCGCAAGTCCCACCCA
GGTTatttccttcaatttttttgaggAACTCACCAAGGCACTTGAACAAC
CTGGACGTTTCTATGCAAGGTACTTAAATACATCAGATGCTTATTGCGAA
TTCAAAGGTTATGCACCAGGAGGAAATAAAGTCATAGTTCAGAAGATCAT
TGCACCGGTGGCGAAAATGGAACAAGATGTTCTTTCTGGACTTACAGCTA
ATCTTGGTACATTGGTTGATGCAGTTGATAATGGTGGTATGATTCTACAA
GGAATTGAAACTATCCAAAAAGTGTCTAAGTTTGCATCCAAGTTGAGCGG
TGCATTGGGAGCCTTTGGGATTGGTTTGGCGGTCCTTGACGCATTCACTT
CACCTTCACCTCAAGATATTTTGGACCAAGCCAACAAAGCTATCGAAAAA
TTAACGGATGAAGTAAACGAGCGATTGGACGAAATGAAAGGATATGTCGA
CCAAAAGACAATCCATCTGGAGAAGGATTTGATCAGTCGAGAATACAAGT
CTTTGTTCAAAATGTGGGGAAACTGTTTGAAGGAAGTTTCAGAAATCGAA
GTCAATGAATGCCAGGAGGACGCTGTTAAGGACATCATGGCGGCGCGACC
GAAATTCGCTCTCTTTTCAAACCAAGTTCAAGCGAATAAAGAACTCCCTG
TTTATGATACTAAAAGGATCGAAACAAGCTTAATAACATTTCGTGACTAT
GTAATTCTTTGCTTGGGTAGTATCTCTGCTTTAACAGCCACCTATGCAGA
GTTACCAGCAAtgaagaaaaagtttcaccgaTACGCAGAAGATTTGAATA
ATGAAATTCGTTGGTCAACCAGGTACGCCCAAAATGCAGTTTCTATGATT
AAAAAGATGCATTATGGTAGGGACTATTGTAATAAAACTCTCAATTGTAA
AACCAATGAACAGTGGGAAGGTTGGTGGACCAGCTCAACGCATGTGGAAA
ACAAGCTCGCATGCACTTGTGTATTCGATGGAGCTGATATAGCAAGTCAT
AAATGTGGCAAAGATGTTTTTGTGAGAATGGACAGACATTACAACCTTGA
CAAGTGGGGTTATCAATGGTATGAGACCAATCAAAACTGGGAGATCAAGA
AAAATTGGGAGGATGGTGGAAAGTGGATCGCTCTGAAAAGATTACACGGA
GATCACGACTATGTAGCAAAATTGAAAGAATCAGTTGATAATTATTGGCA
AGGTTCGCTCCTTGATCTTTTACCATCTTGGAAAGCTTTACACGTGATCA
AATTATCAAAGAGAGATGAAATGGAATACCAAGATGAGAGGTATGGTGCC
CAGAAAGATTGGAAGCGTATGCGTAGTAAAAATTATGAGCGTCGTCGTCG
ACAAGTCAAAGATGAGATGGCGATCGAAATGGATTCCCAATATGCTGAAG
GCGGTGAGAAAAATGTTGATGAATTTTACACTAACGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060515-exon-scaffold_343-1491911889:122689..125319 | TCONS_00060515-exon-scaffold_343-1491911889:122689..125319 | Clytia hemisphaerica | exon |
| TCONS_00060515-exon-scaffold_343-1510915933:122689..125319 | TCONS_00060515-exon-scaffold_343-1510915933:122689..125319 | Clytia hemisphaerica | exon |
| TCONS_00060515-exon-scaffold_343-1575043694:122689..125319 | TCONS_00060515-exon-scaffold_343-1575043694:122689..125319 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_343 | supercontig | scaffold_343:122689..125319 . |
Blast
The following BLAST results are available for this feature:
|
