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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060514 ID=TCONS_00060514|Name=TCONS_00060514|organism=Clytia hemisphaerica|type=transcript|length=1678bp
aaNgtttaggcttaaaactcgaaaagtAAAGAGCATTCGAaggcttaaaa
aaaatttggatgttcttacaaaTAACGTGTATTCGACCTTCCTAGTTATT
CAAACTAAGGCCTTTCTGATTAAAACTTTTAAGCGATGTTGGATCAGAGA
CGTATTAAACTTTAGAATCTTTTATTTACAATCTGCAGTACAGTACAGTA
ATTTacagaaataatgaaaaataaaataacacTCTTGCAACGAATGGATT
TATGTACGTGGTTCTTTNagaaataatgaaaaataaaataacacTCTTGC
AACGAATGGATTTATGTACGTGGTTCTTTAGAAGACCTTTTCATGCTGCT
TTATCATAATTAACATATTGTACAATATTGTCAATATTTTAATGTTCATC
TCGAAGTTTTCAAGTTGATTTGATTCTTTCGACAATGAAAGACAATATGT
ATCGAAATTGATTTTCAACGATTTTGCCGATCAGGAGTTTTGCAGAACTT
TAACATTCTGATCCTCCGTTTATGCCCTCTTCTAATCATCGTCCAACTTT
TCCAAACTCGAATCCTTCAGCTTGGCTGCGTTTCTGACACGAAGCAATCG
ATTTAACCGATTCTCTTAGTAATGTCAATCGAACGATGAAATTAATGGCT
CTAAATAAACCACTTGCAATGATGAACAAGAAAATAATATCTCGCATGAT
ATGAACAAAAGTACAGGAACATTCTTTACAGAGATTTATATAAGCTGTGA
TTACGAGACATGGTAAATAGTTCACGATGAAAAGTACCAACATCCAAAGG
AAGGTTGTTGTGACACGTTTATCCATCTTTGTGAAATTGTGTAGAGTTGT
TTTGCGTTTTCCTTGTGGAACTCCGACATCGATAGACCCCGATCTTGGTG
TAGGACTCTGACGATTTGCGTCCGCGCGCTCACTTTCGGTCAGTCGTCGT
TTGAATAATATCATTGTTGCTACCATTATGATCATTGTCAAGACGACGGT
TGTCAAGGAGAATACAACCAAATAACGCAGGTATCCTACTTGGAAATACA
TGACTGATAAAGCTGCTGATATGAGCCAAGTCAGTATCAAAACAACGATG
GTTCGAGCGCGTGTGATGACTTGGTAGAAATAAAATGGATTCAAAAGTAC
ACCCAAACGGTCAATACTCAAGAAAGCCATTGATAATACTGatacgctat
tggtcaaaaagaACAAATAGTGCATGGAGGAGATTTCGAATTTCGGTATG
TCAGATCGAAAGCCTTCCTTTAAATGGAAACTTATCGATAAAGCATTGAC
GAGGACTCCAGATATGAGATCAGCAAGTGCGATGTTAGCAATAATGAGGT
AGAATGTCCGGTGAAATAAATGATACATTTTGATAATGGAAACCAGTATA
AGGATGTCTAAAGGTACGGCAACGAAAGATACAACCATAGAAAAACCAGC
attgaaaaatgacatttcagCGATTGGTGATTCATCCAAACATTTTGAAT
CCAAATTATCCAACATTTCGAGTTTTTTTAAGGTTCTTTGTCGATTAGTT
TTTTAATATTCTAGTCTAAAACACAAGAGAGAAATGGTAATTTAATTATG
AAATGATTTAATGACAATAACCAAagatgttcaaactgaaaaggGCCCTT
TACTCATAGTTCTGTTACTCTTTCAAAA Run BLAST on NCBI protein sequence of TCONS_00060514-protein >TCONS_00060514-protein ID=TCONS_00060514-protein|Name=TCONS_00060514-protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp
MLDNLDSKCLDESPIAEMSFFNAGFSMVVSFVAVPLDILILVSIIKMYHL
FHRTFYLIIANIALADLISGVLVNALSISFHLKEGFRSDIPKFEISSMHY
LFFLTNSVSVLSMAFLSIDRLGVLLNPFYFYQVITRARTIVVLILTWLIS
AALSVMYFQVGYLRYLVVFSLTTVVLTMIIMVATMILFKRRLTESERADA
NRQSPTPRSGSIDVGVPQGKRKTTLHNFTKMDKRVTTTFLWMLVLFIVNY
LPCLVITAYINLCKECSCTFVHIMRDIIFLFIIASGLFRAINFIVRLTLL
RESVKSIASCQKRSQAEGFEFGKVGR Run BLAST on NCBI transcript from alignment at scaffold_343:40365..42042 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060514 ID=TCONS_00060514|Name=TCONS_00060514|organism=Clytia hemisphaerica|type=transcript|length=1678bp|location=Sequence derived from alignment at scaffold_343:40365..42042 (Clytia hemisphaerica)
TTTTGAAAGAGTAACAGAACTATGAGTAAAGGGCccttttcagtttgaac
atctTTGGTTATTGTCATTAAATCATTTCATAATTAAATTACCATTTCTC
TCTTGTGTTTTAGACTAGAATATTAAAAAACTAATCGACAAAGAACCTTA
AAAAAACTCGAAATGTTGGATAATTTGGATTCAAAATGTTTGGATGAATC
ACCAATCGctgaaatgtcatttttcaatGCTGGTTTTTCTATGGTTGTAT
CTTTCGTTGCCGTACCTTTAGACATCCTTATACTGGTTTCCATTATCAAA
ATGTATCATTTATTTCACCGGACATTCTACCTCATTATTGCTAACATCGC
ACTTGCTGATCTCATATCTGGAGTCCTCGTCAATGCTTTATCGATAAGTT
TCCATTTAAAGGAAGGCTTTCGATCTGACATACCGAAATTCGAAATCTCC
TCCATGCACTATTTGTtctttttgaccaatagcgtatCAGTATTATCAAT
GGCTTTCTTGAGTATTGACCGTTTGGGTGTACTTTTGAATCCATTTTATT
TCTACCAAGTCATCACACGCGCTCGAACCATCGTTGTTTTGATACTGACT
TGGCTCATATCAGCAGCTTTATCAGTCATGTATTTCCAAGTAGGATACCT
GCGTTATTTGGTTGTATTCTCCTTGACAACCGTCGTCTTGACAATGATCA
TAATGGTAGCAACAATGATATTATTCAAACGACGACTGACCGAAAGTGAG
CGCGCGGACGCAAATCGTCAGAGTCCTACACCAAGATCGGGGTCTATCGA
TGTCGGAGTTCCACAAGGAAAACGCAAAACAACTCTACACAATTTCACAA
AGATGGATAAACGTGTCACAACAACCTTCCTTTGGATGTTGGTACTTTTC
ATCGTGAACTATTTACCATGTCTCGTAATCACAGCTTATATAAATCTCTG
TAAAGAATGTTCCTGTACTTTTGTTCATATCATGCGAGATATTATTTTCT
TGTTCATCATTGCAAGTGGTTTATTTAGAGCCATTAATTTCATCGTTCGA
TTGACATTACTAAGAGAATCGGTTAAATCGATTGCTTCGTGTCAGAAACG
CAGCCAAGCTGAAGGATTCGAGTTTGGAAAAGTTGGACGATGATTAGAAG
AGGGCATAAACGGAGGATCAGAATGTTAAAGTTCTGCAAAACTCCTGATC
GGCAAAATCGTTGAAAATCAATTTCGATACATATTGTCTTTCATTGTCGA
AAGAATCAAATCAACTTGAAAACTTCGAGATGAACATTAAAATATTGACA
ATATTGTACAATATGTTAATTATGATAAAGCAGCATGAAAAGGTCTTCTA
AAGAACCACGTACATAAATCCATTCGTTGCAAGAgtgttattttattttt
cattatttctNAAAGAACCACGTACATAAATCCATTCGTTGCAAGAgtgt
tattttatttttcattatttctgtAAATTACTGTACTGTACTGCAGATTG
TAAATAAAAGATTCTAAAGTTTAATACGTCTCTGATCCAACATCGCTTAA
AAGTTTTAATCAGAAAGGCCTTAGTTTGAATAACTAGGAAGGTCGAATAC
ACGTTAtttgtaagaacatccaaattttttttaagcctTCGAATGCTCTT
TacttttcgagttttaagcctaaacNtt Coding sequence (CDS) from alignment at scaffold_343:40365..42042 >TCONS_00060514 ID=TCONS_00060514|Name=TCONS_00060514|organism=Clytia hemisphaerica|type=CDS|length=981bp|location=Sequence derived from alignment at scaffold_343:40365..42042 (Clytia hemisphaerica)
ATGTTGGATAATTTGGATTCAAAATGTTTGGATGAATCACCAATCGctga
aatgtcatttttcaatGCTGGTTTTTCTATGGTTGTATCTTTCGTTGCCG
TACCTTTAGACATCCTTATACTGGTTTCCATTATCAAAATGTATCATTTA
TTTCACCGGACATTCTACCTCATTATTGCTAACATCGCACTTGCTGATCT
CATATCTGGAGTCCTCGTCAATGCTTTATCGATAAGTTTCCATTTAAAGG
AAGGCTTTCGATCTGACATACCGAAATTCGAAATCTCCTCCATGCACTAT
TTGTtctttttgaccaatagcgtatCAGTATTATCAATGGCTTTCTTGAG
TATTGACCGTTTGGGTGTACTTTTGAATCCATTTTATTTCTACCAAGTCA
TCACACGCGCTCGAACCATCGTTGTTTTGATACTGACTTGGCTCATATCA
GCAGCTTTATCAGTCATGTATTTCCAAGTAGGATACCTGCGTTATTTGGT
TGTATTCTCCTTGACAACCGTCGTCTTGACAATGATCATAATGGTAGCAA
CAATGATATTATTCAAACGACGACTGACCGAAAGTGAGCGCGCGGACGCA
AATCGTCAGAGTCCTACACCAAGATCGGGGTCTATCGATGTCGGAGTTCC
ACAAGGAAAACGCAAAACAACTCTACACAATTTCACAAAGATGGATAAAC
GTGTCACAACAACCTTCCTTTGGATGTTGGTACTTTTCATCGTGAACTAT
TTACCATGTCTCGTAATCACAGCTTATATAAATCTCTGTAAAGAATGTTC
CTGTACTTTTGTTCATATCATGCGAGATATTATTTTCTTGTTCATCATTG
CAAGTGGTTTATTTAGAGCCATTAATTTCATCGTTCGATTGACATTACTA
AGAGAATCGGTTAAATCGATTGCTTCGTGTCAGAAACGCAGCCAAGCTGA
AGGATTCGAGTTTGGAAAAGTTGGACGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060514-exon-scaffold_343-1491911889:40365..42042 | TCONS_00060514-exon-scaffold_343-1491911889:40365..42042 | Clytia hemisphaerica | exon |
| TCONS_00060514-exon-scaffold_343-1510915933:40365..42042 | TCONS_00060514-exon-scaffold_343-1510915933:40365..42042 | Clytia hemisphaerica | exon |
| TCONS_00060514-exon-scaffold_343-1575043694:40365..42042 | TCONS_00060514-exon-scaffold_343-1575043694:40365..42042 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_343 | supercontig | scaffold_343:40365..42042 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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