|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060506 ID=TCONS_00060506|Name=TCONS_00060506|organism=Clytia hemisphaerica|type=transcript|length=2672bpRun BLAST on NCBI protein sequence of TCONS_00060506-protein >TCONS_00060506-protein ID=TCONS_00060506-protein|Name=TCONS_00060506-protein|organism=Clytia hemisphaerica|type=polypeptide|length=669bp MKNETKKRSSQIDGWKMKHGKQNTDQPEMNDPGFTDSVFQDKVAKFSKLLRun BLAST on NCBI transcript from alignment at scaffold_343:157424..171968- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060506 ID=TCONS_00060506|Name=TCONS_00060506|organism=Clytia hemisphaerica|type=transcript|length=14545bp|location=Sequence derived from alignment at scaffold_343:157424..171968- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_343:157424..171968- >TCONS_00060506 ID=TCONS_00060506|Name=TCONS_00060506|organism=Clytia hemisphaerica|type=CDS|length=28140bp|location=Sequence derived from alignment at scaffold_343:157424..171968- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060506 vs. Swiss-Prot (Human)
Match: TTC14 (Tetratricopeptide repeat protein 14 OS=Homo sapiens GN=TTC14 PE=1 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 9.697e-31 Identity = 98/332 (29.52%), Postives = 169/332 (50.90%), Query Frame = 3
Query: 270 PPICLEQFMQCPSNFRKQTFFENLKINNVIIGKLAVCSASGWTVKLLGVMEGQKRWIKDLQITA----RLVITKSXXXXXXXXXXXGDLVKALVEKVDVQSKDIWLTLEPSVAAKSQYQLPKLGKIQDPDTVEYLLESREFDEENDSAYLEHIRDSSL-FNHPHGVSLLASHFNVNQDHHGFVV----CNTLKIKETALELREKQMLDWSMSMVGIGVKHFREKNLKEAKKCLDKALSFYPKNVEGFVARGALKANQSDLKGAIDDFRKALEVNPHHRNGKKYLIETSLSLARSHEKEKRWKESSKCYHEIMKHDPDHKEAKERYHQIHQIL 1238
PP LEQFM+ PS R++ FF +++ +++IG+++ G+ + L+ + G R I L+ITA R V + S D Y+ GD+++A ++ +D + + ++L S + KLG I + Y S E + + +Y E++ SSL F +P V L +++ + ++ + A LR+KQ W++ V IGV +F+ +A +KAL +NVE VARGAL A + L AI+DF ALE P HRN +KYL +T + E+E+++ + Y + + D K+A++ ++H+ +
Sbjct: 102 PP--LEQFMEIPSMDRRELFFRDIERGDIVIGRISSIREFGFFMVLICLGSGIMRDIAHLEITALCPLRDVPSHSNHGDPLSYYQTGDIIRAGIKDIDRYHEKLAVSLYSSSLPPHLSGI-KLGVISSEELPLYYRRSVELNSNSLESY-ENVMQSSLGFVNPGVVEFLLEKLGIDESNPPSLMRGLQSKNFSEDDFASALRKKQSASWALKCVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGGQLEEEEKFLNAESYYKKALALDETFKDAEDALQKLHKYM 429 The following BLAST results are available for this feature:
BLAST of TCONS_00060506 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.