|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060500 ID=TCONS_00060500|Name=TCONS_00060500|organism=Clytia hemisphaerica|type=transcript|length=1448bp
CTTGGCTGGTCGTGCTATAGAGAAAAGCTGCATACGAAACTGTTGTTATA
GATTCTTTTGACACAAAAATGaATGATCAGAGCAAAAGTGATGACGAGAA
AATTATCAGAAAGAGGATGGCAATAAGAGACTTGGAAGAAGATAAGCATC
GTAAGAGAAGATAtgcttttttgaaagctttccaCGTCATCAAAAATCTT
CCACCTGAGAACGAGGACTCTTATTGGAAAATTGCGTCCTTTAATGGTCA
GCCTTTTACACATCCAAGAACAACTCCTCCAGAATCACTTAAAATGTGGG
GCGCTGACAGCCAACACCAAAATGTTCTTTTCCTCCCCTGGTACAGAGCT
TATCTTTTACATCTTGAGGAGGCTCTTGTGAGAAATGCCCCTGAAGATGG
AGATTTAGTTGCTTTGCATTACTGGGATGAAACATGGAAAGAGATAATCA
AAAAGGGTGAACCACCTTTGCCAAATCTCTTGGTAAAAGAATTTGTGGAG
ATTGATGACGATGGAACCACGATTTCAAACCCTCTTCTCGGATTCACTCT
TCCTAAAGCAATACCTTTATCCCAAGCAAcatcaaaatatgtcaaaccCG
CAGGTTATACAACATGTCGTTACCCATACTCAGGGCTCAGGAAGCCTGAA
AATCCACTTCAAGAAACCTTCAACgccaaaatccaaaatgatTATGTCAA
TCATAATCTCCCAAAAAGTCCAACTTTTTATTTGCAAGAAAATATCACAC
ATGCGTTAAAGCATTCCATCCACAAGAGTTATAAGGATTGCTtggaagtt
gaaaaatataacaaGTTCTCAAACATCCAGTCAGGTAATCACAGTGTTGA
GCTGGCCAGTATCCAGATGCTTCAAGCGTTAGGTGGGACTGGTGAGTTTT
CCTTAATTGCTGGTTCCCATGGTGATTTAGGATCAAACGAAATGGCGGCT
TTCGATCCGCTTTTCTTCTTGCATATGTCAAATGTAGATCGCGTTTTTTG
GCTTTGGTATGAGAAATGGGCTCATAACGTAGATATGGGTATGAGTAAGC
CAGATAAAGGGGAGCAACCCAAATATGGTCAAGGACCCAGTCCAAACCAA
ACTGGGAATGAAGTGTTAACCGCAGATACGAATTTGTACCCGTTCAAGAA
GGCAGGAAAATACTTGAATAGGAATGAGCTTATGGATATCAAGGAACTAG
GTTACCACTATGAGAGAGGTTCTATGACCTTACCTGACCCCCCTCATGAT
TAAATAACAGTCACAATAAGTGCAGTTGATtgtctctaattcgatcttca
tgaGACTGAAAACTTTCTTCGAATTAGGGAAAGATTGGAATTACTGAGAA
GCGGACCAATCGGACAAATATTTCAGTTCGAATTactgaaatattcgaat
tagagTGAGTCCAGTGTTATTGTTTTGATCCATTATTTTTAACACAGG Run BLAST on NCBI transcript from alignment at scaffold_343:137303..141244- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060500 ID=TCONS_00060500|Name=TCONS_00060500|organism=Clytia hemisphaerica|type=transcript|length=3942bp|location=Sequence derived from alignment at scaffold_343:137303..141244- (Clytia hemisphaerica)
CTTGGCTGGTCGTGCTATAGAGAAAAGCTGCATACGAAACTGTTGTTATA
GATTCTTTTGACACAAAAATGGTAAGTCGAACTCATTATAAGAGTACCTA
AATAACGGGGGGGGGGCTGTGACAATCCAGGATGATAGAAGTTCTTAGTA
ACTATTCATAAATCCTACAAACGAAAATAGACTTTAAGAAATTCTTTATT
CTTCTATCATTCACCTAGCCGTAACGTAATGTATAAAAAAAAATATATTT
CTTTTTTTACAGAATGATCAGAGCAAAAGTGATGACGAGAAAATTATCAG
AAAGAGGTACGATCTATTTTTAAACCTTGTTTTTGAGTTTCCAAATCTTT
AATTGAAGATTGGTGGGGAAAGACCTTGGAATCTTGCGAAAGAGACTGTT
GAGGAAAATGATAGTTTAGTGATGGTTCTGTTTTAAGGGATGCTTTACAA
ATAATATACCTTATTGGCCCTTTTTACGCCGGCCCTAATTTAACGCCGGT
CCTTATTACGCCACAGCCTGATTTTGGGCTTACGCCAATTAGGGCCGTAA
ATAACGCCAAACTTTGTTAAATGGCTATTCATGCTTCAATTTACTTTAAA
ATATCTTTTTTCAGTAGTAAACTGTTGAAAATTCCATTGAAAATCACTGA
TTTTTGCGAAGTTTTATATGGAGTAAAACAATGGATAATTTTTTATCTTC
GAATCATATACCCAAAATCCTTTAAATTGAGAAAAATGGTAAAAAATTAA
CCGCATTTTTAAGTAAAATTTGCCGGCCCACCAAGAGCCTAAAAATAACG
CCAATAAGGGCCGGCGTAAAAAGGGCCGATAAGGTAATACCGAGTCTAAT
ATCTGAAGGATTTACAAAGATTTTGACTCCAAAATACCTTAAATTTCATA
CTTTATCGTCGGCAAAAAGTGACCTGAAAATCGCTATGTGACGAAATTTT
TTACCGATTTTACGGATTACGAATATTTTTGCACACGATTATTTTTGCCG
GTGAATATTTTTTACTAAATGATTATTGGTTACTTTGAACATTTTTTTGT
TTAAAAATTAATACTTTCTTGTTAAATTATTCCTGCTTAAAGGAATAATT
GCAATAATTGCTCAGTTTATCTTTGTTTTTCAGCCTTGATTTCTCTATAA
GGCCGATGTTAAGCCAGAAAAAAATTTATCGGCAAAAACTGTTCGTCAGT
AAAAAGTGACGAAATTTGAATGTTTTTTACCTAAGAATTTTCTACTGATA
AGGTACTTGCTTCTTTTTCTTCAAAGTAATAATATTCATTTATCTTTTAA
TCGTCCTAGGATGGCAATAAGAGACTTGGAAGAAGATAAGCATCGTAAGA
GAAGATATGCTTTTTTGAAAGCTTTCCACGTCATCAAAAATCTTCCACCT
GAGAACGAGGACTCTTATTGGAAAATTGCGTCCTTTAATGGTCAGCCTTT
TACACATCCAAGAACAACTCCTCCAGAATCACTTAAAATGTGGGGCGCTG
ACAGCCAACACCAAAATGTTCTTTTCCTCCCCTGGTACAGAGCTTATCTT
TTACATCTTGAGGACGCTCTTGTGAGAAATGCCCCTGAAGATGGAGATTT
AGTTGCTTTGCATTACTGGGATGAAACATGGAAAGAGATAATAAAAAAGG
ATCCCAAAAAGGCTAAACCACCTTTGCCAAATCTCTTGGTAAAAGAATTT
GTGGAGATTGATGACGATGGAACCACGATTCCAAACCCTCTTCTCGGATT
CAATCTTCCTAAAGCAATACCTTCATCCCAAGCAANCATTGGAAGGTTCT
TAAAAAAACCGAATTAAAAATCGTTATTTTCTCATTCTCAGCCTCAGCAT
GTTTCTTAGATGTTTTTTTTAGTTTTTAGGCATTCTGAGCCTTATGTTTC
TTAAAAGTGTGTTTCTTAAAAAAAAAACGTGTAGTGTATAAAAAAATATA
TATTACTTTTTTTACAGAATAATCAGAGCAAAAGTGATGAAGAGAAAATT
ATCAGAAAGAGGTACGATCTATGTTTCAAACCTTGTTTTTGAGTTTCCAA
ATCTTTAATTGAAGACTGATCAGGAAAGACCTGGAAATCTTGCGAACGAG
GCTGTTTTTTTAAAGTTGAGGAAAATGATAGTTTAAGGGAGGCTTTACAA
ATAATATAATACCGAGCCTAATAGATTTTGACTCCAAAATACCTTATATT
TTATACTTTATCGTCGGCAAAAATTGATTTGAAAATCGTTTTACCGTTAA
ATTTTATAGCTGACGTTTTTTTTTGCCCGCGATAATTTTTGCCGGTTAAT
ATTTTTTACCAAATGATTATCGGTTACTTTGAAAATTTTTTTGTTTAAAA
ATTTTTTAATACTTTCTTGTTAAATTATTCCTGCTTAAAGGACAATAATT
GCAATAATTGCTCAGTTTATCTTTGTTTTTCAGCCTTGATTTCTCTATAA
GGCCGATGTTAAGCCAGAAAAAAATTTATCGGCAAAAACTGTTCGTCAGT
AAAAAGTGACGAAATTTGAATGTTTTTTACCTAAGAATTTTCTACTGATA
AGGTACTTGCTTCTTTTTCTTCAAAGTAATAATATTCATTTATCTTTTAA
TCGTCCTAGGATGGCAATAAGAGACTTGGAAGAAGATAAGCATCGTAAGA
GAAGATATGCTTTTTTGAAAGCTTTCCACGTCATCAAAAATCTTCCACCT
GAGAACGAGGACTCTTATTGGAAAATTGCGTCCTTTAATGGTCAGCCTTT
TACACATCCAAGAACAACTCCTCCAGAATCACTTAAAATGTGGGGCGCTG
ACAGCCAACACCAAAATGTTCTTTTCCTCCCCTGGTACAGAGCTTATCTT
TTACATCTTGAGGAGGCTCTTGTGAGAAATGCCCCTGAAGATGGAGATTT
AGTTGCTTTGCATTACTGGGATGAAACATGGAAAGAGATAATCAAAAAGG
GTGAACCACCTTTGCCAAATCTCTTGGTAAAAGAATTTGTGGAGATTGAT
GACGATGGAACCACGATTTCAAACCCTCTTCTCGGATTCACTCTTCCTAA
AGCAATACCTTTATCCCAAGCAACATCAAAATATGTCAAACCCGCAGGTT
ATACAACATGTCGTTACCCATACTCAGGGCTCAGGAAGCCTGAAAATCCA
CTTCAAGAAACCTTCAACGCCAAAATCCAAAATGATTATGTCAATCATAA
TCTCCCAAAAAGTCCAACTTTTTATTTGCAAGAAAATATCACACATGCGT
TAAAGCATTCCATCCACAAGAGTTATAAGGATTGCTTGGAAGTTGAAAAA
TATAACAAGTTCTCAAACATCCAGTCAGGTAATCACAGTGTTGAGCTGGC
CAGTATCCAGATGCTTCAAGCGTTAGGTGGGACTGGTGAGTTTTCCTTAA
TTGCTGGTTCCCATGGTGATTTAGGATCAAACGAAATGGCGGCTTTCGAT
CCGCTTTTCTTCTTGCATATGTCAAATGTAGATCGCGTTTTTTGGCTTTG
GTATGAGAAATGGGCTCATAACGTAGATATGGGTATGAGTAAGCCAGATA
AAGGGGAGCAACCCAAATATGGTCAAGGACCCAGTCCAAACCAAACTGGG
AATGAAGTGTTAACCGCAGATACGAATTTGTACCCGTTCAAGAAGGCAGG
AAAATACTTGAATAGGAATGAGCTTATGGATATCAAGGAACTAGGTTACC
ACTATGAGAGAGGTTCTATGACCTTACCTGACCCCCCTCATGATTAAATA
ACAGTCACAATAAGTGCAGTTGATTGTCTCTAATTCGATCTTCATGAGAC
TGAAAACTTTCTTCGAATTAGGGAAAGATTGGAATTACTGAGAAGCGGAC
CAATCGGACAAATATTTCAGTTCGAATTACTGAAATATTCGAATTAGAGT
GAGTCCAGTGTTATTGTTTTGATCCATTATTTTTAACACAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060500-exon-scaffold_343-1575043694:141174..141244 | TCONS_00060500-exon-scaffold_343-1575043694:141174..141244 | Clytia hemisphaerica | exon |
| TCONS_00060500-exon-scaffold_343-1575043694:140939..140982 | TCONS_00060500-exon-scaffold_343-1575043694:140939..140982 | Clytia hemisphaerica | exon |
| TCONS_00060500-exon-scaffold_343-1575043694:137303..138635 | TCONS_00060500-exon-scaffold_343-1575043694:137303..138635 | Clytia hemisphaerica | exon |
| TCONS_00060500-exon-scaffold_343-1510915933:141174..141244 | TCONS_00060500-exon-scaffold_343-1510915933:141174..141244 | Clytia hemisphaerica | exon |
| TCONS_00060500-exon-scaffold_343-1510915933:140939..140982 | TCONS_00060500-exon-scaffold_343-1510915933:140939..140982 | Clytia hemisphaerica | exon |
| TCONS_00060500-exon-scaffold_343-1510915933:137303..138635 | TCONS_00060500-exon-scaffold_343-1510915933:137303..138635 | Clytia hemisphaerica | exon |
| TCONS_00060500-exon-scaffold_343-1491911889:141174..141244 | TCONS_00060500-exon-scaffold_343-1491911889:141174..141244 | Clytia hemisphaerica | exon |
| TCONS_00060500-exon-scaffold_343-1491911889:140939..140982 | TCONS_00060500-exon-scaffold_343-1491911889:140939..140982 | Clytia hemisphaerica | exon |
| TCONS_00060500-exon-scaffold_343-1491911889:137303..138635 | TCONS_00060500-exon-scaffold_343-1491911889:137303..138635 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_343 | supercontig | scaffold_343:137303..141244 - |
Blast
The following BLAST results are available for this feature:
|
