TCONS_00060498 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060498
Unique NameTCONS_00060498
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1251

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060498 ID=TCONS_00060498|Name=TCONS_00060498|organism=Clytia hemisphaerica|type=transcript|length=1251bp
ACCATAATAGAAAGGTCTTGGGTAGAAATTTGGATAATACGAATGTTTGA
TTTGCATTGCTGGAGGAAGTGTGGGCGGTGGAGGCGGTGGGTAACGAAAG
TAGGTGGGTTGGGAAGGTTCAATACAGCAACAATCTTTACAGCTATGTTC
AAATACCCGATGAGGTAGGGCTGGTAAGGGTGGTATGGGTGATTGTAAGG
GCGGAGTTAAGTCGTGTTTACGATTGAATTGTGGGTGTACTATAGTAGGG
CGGGTTGGTGATAAAGGTCGTTCGTAGCAGTTGTAGCGACTTATGGGTGT
TGCTTGTCTCCGATGTATGTTTGTAATCTCAGCTCTTTCATCATGGGCTG
TTTTGGCGGTTTGAGGTGGTGATGGGGTAAAGCGTTGCCGTGGTGATACT
GTACATCTGTCAGACATTTTCGTTACTGGTGAACGCGAGCGTGAGCGTTG
GTATCGCTGTTTCAGTTCTCGTTTGTTTTTCGAGTCTTCTTTGGTTGCAC
CGGGAGTGACGATTGATCTACGATATAGTGATGGACTCGCAGCACTTTTT
CGATGAATCTCCTCTTGTGTATGGGTAGGGCTTGGGATTTCGTGAGTTTC
AGACTTTGGTGATCTTCGGGAAAAATCGCTTGCATGTGAACTTGAAAGAT
GGCGTTGAATTGAATAAGAATGGCGgtattcttctttttgactGTTTAAA
TCTGGTTTTTGTTTAGGCTCTTCACTCTGTGTATGAAGCATTCGTTGACT
GTGTAATGGACTCTGATTATGTCTCCGTGTGTCGGGACTTGGTACGCGAT
GATGATATATTGGGCTTCTGGTGCGATGTATATCTTCTTTCGTATGTGTT
GGGCTAGGTATGCAGTGCTCACTTGGTCGCTCATTGTGACACCAACAAGA
AGATTTGAATGCAGGTAATGGAGGTGAGGTTGGTTTGTTTTTCCAAGATG
ACGTCAAATCACCAAGCATCTTTCGACGGTTAATTGTGCCAAGCATTTCA
GTTGACGAATAAGCTATCTTCATTCTTCTGAATATATTTCTACGATTTAT
AAGTTTGTGTGAGTTCACCTAACGGCTAGGGTGACTTATCACACAGGTAT
TATGTTTTTACTTCAATCTTGTCACCGTCAAAcacaatatctttccaacg
ctTAATATGATTAAGCCAACTGACCTTGGAATGTCTTTTTCTTCCCTTCT
TTGACTTGGTTTACTGCTGGTCGACAAATAACTGATTTCTGACCGATCAT
T
Run BLAST on NCBI

transcript from alignment at scaffold_343:134146..135461-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060498 ID=TCONS_00060498|Name=TCONS_00060498|organism=Clytia hemisphaerica|type=transcript|length=1316bp|location=Sequence derived from alignment at scaffold_343:134146..135461- (Clytia hemisphaerica)
ACCATAATAGAAAGGTCTTGGGTAGAAATTTGGATAATACGAATGTTTGA
TTTGCATTGCTGGAGGAAGTGTGGGCGGTGGAGGCGGTGGATAACGAAAG
TAGGTGGGTGGGGAAGGTTCAATACAGCAACAANTGTGGGCGGTGGAGGC
GGTGGGTAACGAAAGTAGGTGGGTTGGGAAGGTTCAATACAGCAACAATC
TTTACAGCTATGTTCAAATACCCGATGAGGTAGGGCTGGTAAGGGTGGTA
TGGGTGATTGTAAGGGCGGAGTTAAGTCGTGTTTACGATTGAATTGTGGG
TGTACTATAGTAGGGCGGGTTGGTGATAAAGGTCGTTCGTAGCAGTTGTA
GCGACTTATGGGTGTTGCTTGTCTCCGATGTATGTTTGTAATCTCAGCTC
TTTCATCATGGGCTGTTTTGGCGGTTTGAGGTGGTGATGGGGTAAAGCGT
TGCCGTGGTGATACTGTACATCTGTCAGACATTTTCGTTACTGGTGAACG
CGAGCGTGAGCGTTGGTATCGCTGTTTCAGTTCTCGTTTGTTTTTCGAGT
CTTCTTTGGTTGCACCGGGAGTGACGATTGATCTACGATATAGTGATGGA
CTCGCAGCACTTTTTCGATGAATCTCCTCTTGTGTATGGGTAGGGCTTGG
GATTTCGTGAGTTTCAGACTTTGGTGATCTTCGGGAAAAATCGCTTGCAT
GTGAACTTGAAAGATGGCGTTGAATTGAATAAGAATGGCGGTATTCTTCT
TTTTGACTGTTTAAATCTGGTTTTTGTTTAGGCTCTTCACTCTGTGTATG
AAGCATTCGTTGACTGTGTAATGGACTCTGATTATGTCTCCGTGTGTCGG
GACTTGGTACGCGATGATGATATATTGGGCTTCTGGTGCGATGTATATCT
TCTTTCGTATGTGTTGGGCTAGGTATGCAGTGCTCACTTGGTCGCTCATT
GTGACACCAACAAGAAGATTTGAATGCAGGTAATGGAGGTGAGGTTGGTT
TGTTTTTCCAAGATGACGTCAAATCACCAAGCATCTTTCGACGGTTAATT
GTGCCAAGCATTTCAGTTGACGAATAAGCTATCTTCATTCTTCTGAATAT
ATTTCTACGATTTATAAGTTTGTGTGAGTTCACCTAACGGCTAGGGTGAC
TTATCACACAGGTATTATGTTTTTACTTCAATCTTGTCACCGTCAAACAC
AATATCTTTCCAACGCTTAATATGATTAAGCCAACTGACCTTGGAATGTC
TTTTTCTTCCCTTCTTTGACTTGGTTTACTGCTGGTCGACAAATAACTGA
TTTCTGACCGATCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038058XLOC_038058Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060498-exon-scaffold_343-1575043694:135379..135461TCONS_00060498-exon-scaffold_343-1575043694:135379..135461Clytia hemisphaericaexon
TCONS_00060498-exon-scaffold_343-1575043694:134146..135313TCONS_00060498-exon-scaffold_343-1575043694:134146..135313Clytia hemisphaericaexon
TCONS_00060498-exon-scaffold_343-1510915933:135379..135461TCONS_00060498-exon-scaffold_343-1510915933:135379..135461Clytia hemisphaericaexon
TCONS_00060498-exon-scaffold_343-1510915933:134146..135313TCONS_00060498-exon-scaffold_343-1510915933:134146..135313Clytia hemisphaericaexon
TCONS_00060498-exon-scaffold_343-1491911889:135379..135461TCONS_00060498-exon-scaffold_343-1491911889:135379..135461Clytia hemisphaericaexon
TCONS_00060498-exon-scaffold_343-1491911889:134146..135313TCONS_00060498-exon-scaffold_343-1491911889:134146..135313Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_343supercontigscaffold_343:134146..135461 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.22967e-09	1.40329e-09	0	0	0	0	0	0	4.38702e-09	0	0	1.39559e-09	0.645147	0	0	4.40462	4.83873	0	0	1.88837	2.59055	1.67383e-08	0	0.478671	2.56993	0	1.49764e-09	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060498 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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