TCONS_00060497 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060497
Unique NameTCONS_00060497
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1237

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060497 ID=TCONS_00060497|Name=TCONS_00060497|organism=Clytia hemisphaerica|type=transcript|length=1237bp
GTCTTGGGTAGAAATTTGGATAATACGAATGTTTGATTTGCATTGCTGGA
GGAAGTGTGGGCGGTGGAGGCGGTGGATAACGAAAGTAGGTGGGTGGGGA
AGGTTCAATACAGCAACAATCTTTACAGCTATGTTCAAATACCCGATGAG
GTAGGGCTGGTAAGGGTGGTATGGGTGATTGTAAGGGCGGAGTTAAGTCG
TGTTTACGATTGAATTGTGGGTGTACTATAGTAGGGCGGGTTGGTGATAA
AGGTCGTTCGTAGCAGTTGTAGCGACTTATGGGTGTTGCTTGTCTCCGAT
GTATGTTTGTAATCTCAGCTCTTTCATCATGGGCTGTTTTGGCGGTTTGA
GGTGGTGATGGGGTAAAGCGTTGCCGTGGTGATACTGTACATCTGTCAGA
CATTTTCGTTACTGGTGAACGCGAGCGTGAGCGTTGGTATCGCTGTTTCA
GTTCTCGTTTGTTTTTCGAGTCTTCTTTGGTTGCACCGGGAGTGACGATT
GATCTACGATATAGTGATGGACTCGCAGCACTTTTTCGATGAATCTCCTC
TTGTGTATGGGTAGGGCTTGGGATTTCGTGAGTTTCAGACTTTGGTGATC
TTCGGGAAAAATCGCTTGCATGTGAACTTGAAAGATGGCGTTGAATTGAA
TAAGAATGGCGgtattcttctttttgactGTTTAAATCTGGTTTTTGTTT
AGGCTCTTCACTCTGTGTATGAAGCATTCGTTGACTGTGTAATGGACTCT
GATTATGTCTCCGTGTGTCGGGACTTGGTACGCGATGATGATATATTGGG
CTTCTGGTGCGATGTATATCTTCTTTCGTATGTGTTGGGCTAGGTATGCA
GTGCTCACTTGGTCGCTCATTGTGACACCAACAAGAAGATTTGAATGCAG
GTAATGGAGGTGAGGTTGGTTTGTTTTTCCAAGATGACGTCAAATCACCA
AGCATCTTTCGACGGTTAATTGTGCCAAGCATTTCAGTTGACGAATAAGC
TATCTTCATTCTTCTGAATATATTTCTACGATTTATAAGTTTGTGTGAGT
TCACCTAACGGCTAGGGTGACTTATCACACAGGTATTATGTTTTTACTTC
AATCTTGTCACCGTCAAAcacaatatctttccaacgctTAATATGATTAA
GCCAACTGACCTTGGAATGTCTTTTTCTTCCCTTCTTTGACTTGGTTTAC
TGCTGGTCGACAAATAACTGATTTCTGACCGATCATT
Run BLAST on NCBI

transcript from alignment at scaffold_343:134146..135447-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060497 ID=TCONS_00060497|Name=TCONS_00060497|organism=Clytia hemisphaerica|type=transcript|length=1302bp|location=Sequence derived from alignment at scaffold_343:134146..135447- (Clytia hemisphaerica)
GTCTTGGGTAGAAATTTGGATAATACGAATGTTTGATTTGCATTGCTGGA
GGAAGTGTGGGCGGTGGAGGCGGTGGATAACGAAAGTAGGTGGGTGGGGA
AGGTTCAATACAGCAACAANTGTGGGCGGTGGAGGCGGTGGGTAACGAAA
GTAGGTGGGTTGGGAAGGTTCAATACAGCAACAATCTTTACAGCTATGTT
CAAATACCCGATGAGGTAGGGCTGGTAAGGGTGGTATGGGTGATTGTAAG
GGCGGAGTTAAGTCGTGTTTACGATTGAATTGTGGGTGTACTATAGTAGG
GCGGGTTGGTGATAAAGGTCGTTCGTAGCAGTTGTAGCGACTTATGGGTG
TTGCTTGTCTCCGATGTATGTTTGTAATCTCAGCTCTTTCATCATGGGCT
GTTTTGGCGGTTTGAGGTGGTGATGGGGTAAAGCGTTGCCGTGGTGATAC
TGTACATCTGTCAGACATTTTCGTTACTGGTGAACGCGAGCGTGAGCGTT
GGTATCGCTGTTTCAGTTCTCGTTTGTTTTTCGAGTCTTCTTTGGTTGCA
CCGGGAGTGACGATTGATCTACGATATAGTGATGGACTCGCAGCACTTTT
TCGATGAATCTCCTCTTGTGTATGGGTAGGGCTTGGGATTTCGTGAGTTT
CAGACTTTGGTGATCTTCGGGAAAAATCGCTTGCATGTGAACTTGAAAGA
TGGCGTTGAATTGAATAAGAATGGCGGTATTCTTCTTTTTGACTGTTTAA
ATCTGGTTTTTGTTTAGGCTCTTCACTCTGTGTATGAAGCATTCGTTGAC
TGTGTAATGGACTCTGATTATGTCTCCGTGTGTCGGGACTTGGTACGCGA
TGATGATATATTGGGCTTCTGGTGCGATGTATATCTTCTTTCGTATGTGT
TGGGCTAGGTATGCAGTGCTCACTTGGTCGCTCATTGTGACACCAACAAG
AAGATTTGAATGCAGGTAATGGAGGTGAGGTTGGTTTGTTTTTCCAAGAT
GACGTCAAATCACCAAGCATCTTTCGACGGTTAATTGTGCCAAGCATTTC
AGTTGACGAATAAGCTATCTTCATTCTTCTGAATATATTTCTACGATTTA
TAAGTTTGTGTGAGTTCACCTAACGGCTAGGGTGACTTATCACACAGGTA
TTATGTTTTTACTTCAATCTTGTCACCGTCAAACACAATATCTTTCCAAC
GCTTAATATGATTAAGCCAACTGACCTTGGAATGTCTTTTTCTTCCCTTC
TTTGACTTGGTTTACTGCTGGTCGACAAATAACTGATTTCTGACCGATCA
TT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038058XLOC_038058Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060497-exon-scaffold_343-1575043694:135346..135447TCONS_00060497-exon-scaffold_343-1575043694:135346..135447Clytia hemisphaericaexon
TCONS_00060497-exon-scaffold_343-1575043694:134146..135280TCONS_00060497-exon-scaffold_343-1575043694:134146..135280Clytia hemisphaericaexon
TCONS_00060497-exon-scaffold_343-1510915933:135346..135447TCONS_00060497-exon-scaffold_343-1510915933:135346..135447Clytia hemisphaericaexon
TCONS_00060497-exon-scaffold_343-1510915933:134146..135280TCONS_00060497-exon-scaffold_343-1510915933:134146..135280Clytia hemisphaericaexon
TCONS_00060497-exon-scaffold_343-1491911889:135346..135447TCONS_00060497-exon-scaffold_343-1491911889:135346..135447Clytia hemisphaericaexon
TCONS_00060497-exon-scaffold_343-1491911889:134146..135280TCONS_00060497-exon-scaffold_343-1491911889:134146..135280Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_343supercontigscaffold_343:134146..135447 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0336541	0.161104	0	0	0	0	0	0	0.0360229	0	0	0.169128	0	0	0	3.50669	1.49981	0	0	2.39365	2.95892	1.16496	1.48846	0	0.408989	0.047322	0.0567085	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060497 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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