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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060495 ID=TCONS_00060495|Name=TCONS_00060495|organism=Clytia hemisphaerica|type=transcript|length=1730bpRun BLAST on NCBI protein sequence of TCONS_00060495-protein >TCONS_00060495-protein ID=TCONS_00060495-protein|Name=TCONS_00060495-protein|organism=Clytia hemisphaerica|type=polypeptide|length=418bp MFSASSLRFCRTSLSNHSSRYFSTSRAASKEVVIASAVRTPIGSFQSSLSRun BLAST on NCBI transcript from alignment at scaffold_343:11230..23961- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060495 ID=TCONS_00060495|Name=TCONS_00060495|organism=Clytia hemisphaerica|type=transcript|length=12732bp|location=Sequence derived from alignment at scaffold_343:11230..23961- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_343:11230..23961- >TCONS_00060495 ID=TCONS_00060495|Name=TCONS_00060495|organism=Clytia hemisphaerica|type=CDS|length=11313bp|location=Sequence derived from alignment at scaffold_343:11230..23961- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060495 vs. Swiss-Prot (Human)
Match: THIL (Acetyl-CoA acetyltransferase, mitochondrial OS=Homo sapiens GN=ACAT1 PE=1 SV=1) HSP 1 Score: 435.261 bits (1118), Expect = 3.271e-147 Identity = 233/371 (62.80%), Postives = 274/371 (73.85%), Query Frame = 3
Query: 405 SRAASKEVVIASAVRTPIGSFQSSLSSLPATKLGSIAIQEAIKYAQIEPENVQEVYMGNVCIXXXXXXXXXXXXLGAGIPQSTPCCTINKVCASGMKSIMMAAQSIMAGSQEIMVAGGQESMSNVPYYVKREPLKYGGNMMLDGIVYDGLTDAYDGIHMGVCAEGTVSKYGITREEQDAYAQASYTKSRAAWEKNLFAHEVVPVTVPNKRRGKPPTEVAIDEEFTKVSFDKMSGLKAVFRKD-GTITAANASTLNDGAAATVLMSAEAAKQHDGKPLARIISFADASCAPVDFSVAPALAMPKALEQAGLTFDDMSMIEINEAFSAVVLANIKELNLDAEKVNKNGGAVSIGHPIGMSGTRIVAHLVHNLE 1514
S+ KEVVI SA RTPIGSF SLS LPATKLGSIAIQ AI+ A I E V+E YMGNV GQAP RQA LGAG+P STPC TINKVCASGMK+IMMA+QS+M G Q++MVAGG ESMSNVPY + R YGG + D IV DGLTD Y+ IHMG CAE T K I R EQDAYA SYT+S+AAWE F +EV+PVTV K G+P V DEE+ +V F K+ LK VF+K+ GT+TAANASTLNDGAAA VLM+A+AAK+ + PLARI++FADA+ P+DF +AP A L+ GL +D++M E+NEAFS VVLANIK L +D +KVN NGGAVS+GHPIGMSG RIV HL H L+
Sbjct: 35 SKPTLKEVVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGEGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSNVPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVTVK--GQPDVVVKEDEEYKRVDFSKVPKLKTVFQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVGHLTHALK 403 The following BLAST results are available for this feature:
BLAST of TCONS_00060495 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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