TCONS_00060492 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00060492
Unique Name	TCONS_00060492
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	4657

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_343:180753..187739+
coding sequence from alignment at scaffold_343:180753..187739+

transcript sequence

>TCONS_00060492 ID=TCONS_00060492|Name=TCONS_00060492|organism=Clytia hemisphaerica|type=transcript|length=4657bp
CGTGTTGCGAGATCAAAAAATCTCCTCTGTGTGACAAGGCGACAAGGTGA
TAGCCAGACTGTTTTTACTAGTTTGCTGACTTTTCTGATAAATACAGTAT
CAAATTGAGTGAgggttgaatattttttgattaaaaCTGAAAGAATAAAA
GACTTTGATGAACTTGGCATCAGGGTTGCTTATTTAGCATGGTATATAAA
AAAGTGAGAGACAGAAGATTAAAGAAACaataaagattgaaagaagtcaa
AAGTTTGATCATATCAAGTGAAGAATCCAATACTTTTTCTGAACATTGAT
TGTTTTATTACGACCCACTATCTGCGCCACAAGATTTTCCTCTCTGAAAT
TCCCGGCCGAACGCGCCCGAAAAATGGGCGAGTTCGAGGAGAGAGCCCAG
TTCCGGGATCATGTatgaccctcgacatggcccgagaattctcgggccaa
aacctttattggaattcgcgtaaagcccgagtatggcccaagctggcccg
agaattcgggccatgttcgggccacacgcgggccacgcacaggccacgca
cgggccacactcgggccaatttttgaaaacatgatttaaacaggcgtgta
atttcaggactgaatttttttaacattttctNtagggtctctcggcccga
acatggcccaaagaggcccgagaattctcgggccatgttgAGGGTCGTGA
TCATGTTcaagactttttattttttaagttcTAATTTTCCAATTGGCACA
AAAAAAATCAGCCCATATTGATTGTGGTTTGGGGTTTAATCTTGGTTTAT
TTAgttcaatacaccgtttagtagtgtcaactgcgcacgcgtccaaacaa
ttttcgattgttttgatttgagcgacCGCTCTTTCCCgtaaaaacggtag
gtaaaatcTCGGTTCTCGTAAAGGAAACCTAGCAGAGAAATAGTAGGttc
tcttgatgaatttttgtgaaattttcaggaaaggtccataaaattatcat
tgtcattgatatcatgttcaaatatctaaatcattctctctCATGGTGGA
GATAGCAAGACTCCTAAACGATGTATTGCATCATAATTTAGCTAGAGATT
CAGCCATTTAGAtctgatttgattgttgagggaATTTCTGCTAGAAGAGC
AATGTAGCCAGAGGTGATGCTTGGGCAGGCTTTTTAAAAACAAGATGGCA
GATGGAATCAATTCTTGCTGCTAGCTTATACAAATTTTTTTACCCCATAT
TCGACCAACCAAGTGTCTTTTTCAAAGTCGGGGTGACGGGGGAAACCAAG
CTATTTTTTACGAATAGCCAATTTATTACTGAATGACAGTTTGTTATTTA
CCAATATGTTGCGTTTGGTATCagagaaataaataagaacaaaatgtaTT
AAAGGGGTGAAGCCCAAACTTATCCTGTCACTATGCACCTAATTTGACAT
TTTAGGGAGTACAGTATATAGTGGCAGCCATTCTAATTCGCGTCAGCATT
CGGGTATTGCCACAGAATGCCAACATAAATTTGGGTTTTGCCAACGTAAA
AGTCAAAAGTGCTTACTGTACTATAGAACCCAGAATTTTTTGTCGACGCA
GATTAATCTGAATTAGAAAGGCTGAGTGGGGGTTTTGCTGCTTGatgttt
aaaatctttggaaaatgctactttctatttctatataCTTTTTAATGTCA
AGACTCAAGTCAAGACCAAGCATTATAGCCATCTTCGAAACAAAAGTAGA
TCCACTGCTTATGTTGTGTATACcttgagatcaggtaacttgaaTCAGTG
GGGAGAAAcctgcatagccctcaaatgcaTGACCAACCaatgcagcaaaa
tttcaaaacaaatgtaaTAGTgcaatgaactacgcagctccgcttgcagc
tctattCTACAATTTTAGAATCTCATATTTGCTGCGCGAGTATTCTCACT
AGTTTCCTATCCCTACATGGGGAATcagcgcttaccagacattgtactct
gtgctcGCTGCACATCAGAGTCGtgctgtatcgatgatgatgataataCT
CGCACAGTACTGGAGAACCTTGCGTATTCTTGCAGGTTCTGAATATATGA
GTACTATCACCACACCACATTCGATGTTCGGCATATAtctccccatactc
ttgtatcagagtgatggtaaacctattcccctcacatgctatgggttgac
ccgggccaaggtacattcacttgtcAAGTGAATCGTAGCatcgagtggga
atcgaaccctgacctccTGCACGGAAGTCAGGaaacataattatgcatga
TATCACTTTTATGAGATAGGAGATATACattttgtaaatcaggtttgttt
tgatttgacttCACTCAGGCACGGATTTTTCACTTATATCCTTAGGATCC
TGAGCATCCTCAGGCTTTTAGAGGATATCCTCAGGATCCTCTGTTTTGCC
TTGGTTTGATAAAACATCAATATTATAATTTCCCaaggatccttagggtc
ctcaggcttttgcgaggataacctgaggatcctcacctttttttcttttt
ttctcaaaatatgaaccttaggattcTTAGGGTCCTCAGGATATTGCAAG
GATATCCTCAGGAtcctcaaaaatttattttacgtCAATTATTTCTCATT
AAAGAAAGTGAATCTTAGGATCCTTAGGATCCTCAGGCTTTCCCAAGGAT
ATCCTCAGGATCctcaaaaaaagaataaaaaaagtgaggatcctcaggat
atcctTGCAAAatcctgaggaccctaaggatcctaaggttcatattttga
gaaaaaaagaaaaaaaagtgaggatcctcaggttatcctcgcaaaagcct
gaggaccctaaggatcctaaggttcatattttgagaaaaaaagaaaaaaa
agtgaggatcctcaggttatcctcgcaaaagcctgaggaccctaaggatc
ctaaggttcatattttgagaaaaaaagaaaaaaaagtgaggatcctcagg
ttatcctcgcaaaagcctgaggaccctaaggatcctaaggttcatatttt
gagaaaaaaagaaaaaaaagtgaggatcctcaggttatcctcgcaaaagc
ctgagaaccctaaggatcctaaggttcatattttgagaaaatacaaaaaa
aggtgAGGATATCCTCAGGATCCGGAGGATAAATGTGAAAAATCCGTGCT
TAGCTCTttgactttgtattttaatgaccagccattGACCATTCATTTAC
AGTATCTATTTGCCTTCTCCATTGCTAGCTTGTAATTTTGTAAAAGAACA
ACTTGATTTCGTCTGactaaaatattctaaaattctATGATTTAGGGGAA
ATAATAATATGGGTGAAGTTAGTGTGGAAAGACCTCCAGtgcacaaattt
acaaaaacagCTGAAAGGGAAGCCATTGAGAGAAGAAGgCAGAGGTTCTC
TCAACTAGCTAcaccaaaaacatcaaaaactaTTTGGGCAACTGTCGAGC
CTCCACTGACATGGGGCAACCAAGATCCAATGAGGCCCATAAGCACAGCT
GCATTGAATACAAACGCAAGTGAACGTTTGTCTGCTCTTGCTACACCAAA
GAAGAATTTCCAATTCGATCACCCACAGAAATGTAGTCGccattgTTTTG
TTTACTCTGCTGGTCGCTCATCTGTCATTTGGGATGTCAGTCCACTGGCT
ATGAAATCGAACCCCAGTGAAAGAATTGAAGAACTTTCGAAACCAAAGAA
ATTAACAATGGGTTATTCAGAAGATAGGTCAAGTTACGTTCTTGGTTGTG
GGCGATCCTCTCCCATTTGGGGTATCACTTCATCAGCAAAGAAAGCTGCC
CTCAGTGATCGAGTAGAAGCTTTATCACACCCAAAGATTGCGCATAAAGA
ATATCAACCTCCTCGTGGtGTTCAATGGCCAGTTTCCCAAAGTGCTAAAA
GTGGAACCTTTCCGGATCACATCGAGACTTTGTCAAGACCCAAAGAACGT
AATGACGGTGCCCATAGAGATTCTGTATGGAAAGTCAGCAAAGGTGCTAG
AAGTACTCAAGCCTCCTCGCGTGTTCAGGAATTAGCGCAGCCCAAGAAAT
ATACTGACGGTTATCAACCAAATCGCGAGGGAGAATCGAGAGTGGCTCGA
TCAGCGTTAAGGGCTGCTGCAACCGAGCGTTTAAAAGAACTTTCTAACCC
AATCATCCGAGACACTATGGATCATGTACAATTTGATCCCCTGGCTTTCC
AAGTCAAAGAAACTGCACTGAAAGGCAGAGTTCCTGATCGAATCCATGAC
CTTGCTATTCCTGTTATTCGAGGTcccaaaaattagtttttctttttatt
ttgtttgtttgtttgtttgtttgtttgttcgtGTCTTGTGAtatgtattt
tttgattttttgatttctttttctttaacatGAAGGACTATCAGACGAGA
GATCACTTACTTTAGCgcttaaaaaaatgataaaattatgaactttggat
ttaaaaagctctaatttCCGATCTCTTTATCtgatcttttttcctttttg
caaTTTGATCTCCAATTTTCTTGGAATTGACaaaatctctctaattcgaa
aggcgatctttaaatttaaagtatatattttttttataatgattgaataa
ttttttg

Run BLAST on NCBI

protein sequence of TCONS_00060492-protein

>TCONS_00060492-protein ID=TCONS_00060492-protein|Name=TCONS_00060492-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
MGEVSVERPPVHKFTKTAEREAIERRRQRFSQLATPKTSKTIWATVEPPL
TWGNQDPMRPISTAALNTNASERLSALATPKKNFQFDHPQKCSRHCFVYS
AGRSSVIWDVSPLAMKSNPSERIEELSKPKKLTMGYSEDRSSYVLGCGRS
SPIWGITSSAKKAALSDRVEALSHPKIAHKEYQPPRGVQWPVSQSAKSGT
FPDHIETLSRPKERNDGAHRDSVWKVSKGARSTQASSRVQELAQPKKYTD
GYQPNREGESRVARSALRAAATERLKELSNPIIRDTMDHVQFDPLAFQVK
ETALKGRVPDRIHDLAIPVIRGPKN

Run BLAST on NCBI

transcript from alignment at scaffold_343:180753..187739+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00060492 ID=TCONS_00060492|Name=TCONS_00060492|organism=Clytia hemisphaerica|type=transcript|length=6987bp|location=Sequence derived from alignment at scaffold_343:180753..187739+ (Clytia hemisphaerica)
CGTGTTGCGAGATCAAAAAATCTCCTCTGTGTGACAAGGCGACAAGGTGA
TAGCCAGACTGTTTTTACTAGTTTGCTGACTTTTCTGATAAATACAGTAT
CAAATTGAGTGAgggttgaatattttttgattaaaaCTGAAAGAATAAAA
GACTTTGATGAACTTGGCATCAGGGTTGCTTATTTAGCATGGTATATAAA
AAAGTGAGAGACAGAAGATTAAAGAAACaataaagattgaaagaagtcaa
AAGTTTGATCATATCAAGTGAAGAATCCAATACTTTTTCTGAACATTGAT
TGTTTTATTACGACCCACTATCTGCGCCACAAGATTTTCCTCTCTGAAAT
TCCCGGCCGAACGCGCCCGAAAAATGGGCGAGTTCGAGGAGAGAGCCCAG
TTCCGGGATCATGTatgaccctcgacatggcccgagaattctcgggccaa
aacctttattggaattcgcgtaaagcccgagtatggcccaagctggcccg
agaattcgggccatgttcgggccacacgcgggccacgcacaggccacgca
cgggccacactcgggccaatttttgaaaacatgatttaaacaggcgtgta
atttcaggactgaatttttttaacattttctNtagggtctctcggcccga
acatggcccaaagaggcccgagaattctcgggccatgttgAGGGTCGTGA
TCATGTTcaagactttttattttttaagttcTAATTTTCCAATTGGCACA
AAAAAAATCAGCCCATATTGATTGTGGTTTGGGGTTTAATCTTGGTTTAT
TTAgttcaatacaccgtttagtagtgtcaactgcgcacgcgtccaaacaa
ttttcgattgttttgatttgagcgacCGCTCTTTCCCgtaaaaacggtag
gtaaaatcTCGGTTCTCGTAAAGGAAACCTAGCAGAGAAATAGTAGGttc
tcttgatgaatttttgtgaaattttcaggaaaggtccataaaattatcat
tgtcattgatatcatgttcaaatatctaaatcattctctctCATGGTGGA
GATAGCAAGACTCCTAAACGATGTATTGCATCATAATTTAGCTAGAGATT
CAGCCATTTAGAtctgatttgattgttgagggaATTTCTGCTAGAAGAGC
AATGTAGCCAGAGGTGATGCTTGGGCAGGCTTTTTAAAAACAAGATGGCA
GATGGAATCAATTCTTGCTGCTAGCTTATACAAATTTTTTTACCCCATAT
TCGACCAACCAAGTGTCTTTTTCAAAGTCGGGGTGACGGGGGAAACCAAG
CTATTTTTTACGAATAGCCAATTTATTACTGAATGACAGTTTGTTATTTA
CCAATATGTTGCGTTTGGTATCagagaaataaataagaacaaaatgtaTT
AAAGGGGTGAAGCCCAAACTTATCCTGTCACTATGCACCTAATTTGACAT
TTTAGGGAGTACAGTATATAGTGGCAGCCATTCTAATTCGCGTCAGCATT
CGGGTATTGCCACAGAATGCCAACATAAATTTGGGTTTTGCCAACGTAAA
AGTCAAAAGTGCTTACTGTACTATAGAACCCAGAATTTTTTGTCGACGCA
GATTAATCTGAATTAGAAAGGCTGAGTGGGGGTTTTGCTGCTTGatgttt
aaaatctttggaaaatgctactttctatttctatataCTTTTTAATGTCA
AGACTCAAGTCAAGACCAAGCATTATAGCCATCTTCGAAACAAAAGTAGA
TCCACTGCTTATGTTGTGTATACcttgagatcaggtaacttgaaTCAGTG
GGGAGAAAcctgcatagccctcaaatgcaTGACCAACCaatgcagcaaaa
tttcaaaacaaatgtaaTAGTgcaatgaactacgcagctccgcttgcagc
tctattCTACAATTTTAGAATCTCATATTTGCTGCGCGAGTATTCTCACT
AGTTTCCTATCCCTACATGGGGAATcagcgcttaccagacattgtactct
gtgctcGCTGCACATCAGAGTCGtgctgtatcgatgatgatgataataCT
CGCACAGTACTGGAGAACCTTGCGTATTCTTGCAGGTTCTGAATATATGA
GTACTATCACCACACCACATTCGATGTTCGGCATATAtctccccatactc
ttgtatcagagtgatggtaaacctattcccctcacatgctatgggttgac
ccgggccaaggtacattcacttgtcAAGTGAATCGTAGCatcgagtggga
atcgaaccctgacctccTGCACGGAAGTCAGGaaacataattatgcatga
TATCACTTTTATGAGATAGGAGATATACattttgtaaatcaggtttgttt
tgatttgacttCACTCAGGCACGGATTTTTCACTTATATCCTTAGGATCC
TGAGCATCCTCAGGCTTTTAGAGGATATCCTCAGGATCCTCTGTTTTGCC
TTGGTTTGATAAAACATCAATATTATAATTTCCCaaggatccttagggtc
ctcaggcttttgcgaggataacctgaggatcctcacctttttttcttttt
ttctcaaaatatgaaccttaggattcTTAGGGTCCTCAGGATATTGCAAG
GATATCCTCAGGAtcctcaaaaatttattttacgtCAATTATTTCTCATT
AAAGAAAGTGAATCTTAGGATCCTTAGGATCCTCAGGCTTTCCCAAGGAT
ATCCTCAGGATCctcaaaaaaagaataaaaaaagtgaggatcctcaggat
atcctTGCAAAatcctgaggaccctaaggatcctaaggttcatattttga
gaaaaaaagaaaaaaaagtgaggatcctcaggttatcctcgcaaaagcct
gaggaccctaaggatcctaaggttcatattttgagaaaaaaagaaaaaaa
agtgaggatcctcaggttatcctcgcaaaagcctgaggaccctaaggatc
ctaaggttcatattttgagaaaaaaagaaaaaaaagtgaggatcctcagg
ttatcctcgcaaaagcctgaggaccctaaggatcctaaggttcatatttt
gagaaaaaaagaaaaaaaagtgaggatcctcaggttatcctcgcaaaagc
ctgagaaccctaaggatcctaaggttcatattttgagaaaatacaaaaaa
aggtgAGGATATCCTCAGGATCCGGAGGATAAATGTGAAAAATCCGTGCT
TAGCTCTttgactttgtattttaatgaccagccattGACCATTCATTTAC
AGTATCTATTTGCCTTCTCCATTGCTAGCTTGTAATTTTGTAAAAGAACA
ACTTGATTTCGTCTGactaaaatattctaaaattctATGATTTAGGGGAA
ATAATAATATGGGTGAAGTTAGTGTGGAAAGACCTCCAGGTAAGAAAGCA
TTATTTACTTTAATTCCAAAAAGTCAAAAGCAGCTAGAATTAGCTAACAA
CAATTGAAAAGTACACTGTTTGAACCTAACTGTTACACGTTCAAAGTACA
CGTTCTCTGATCCATANACTAACAACAATTGAAAAGTACACTGTTTTGAA
CCTACTGTTTTTGACAAAGCTGATTTAACTTATTATCAGTACAATATTTA
CTGGACATCTTTCTCTTCCTTTAGtgcacaaatttacaaaaacagCTGAA
AGGGAAGCCATTGAGAGAAGAAGGTTGGTCTTTTTGATTGATGTTACGGT
ATTGTGTCATGATTATTTCTTTTCTGACAACTGCAGTTAGCTTTTAATAT
ATCtctttaattatttttagtagGTTAATGTTGAGGTTATAGATTGAATT
ATCCCAAGGATCAAAAACcatctttttcaaaacttttaggCAGAGGTTCT
CTCAACTAGCTAcaccaaaaacatcaaaaactaTTTGGGCAACTGTCGAG
TAAGTATATCAACAGAAATGTTttcgttttctctttttttagtgCTGTCG
CAACTAAtacatcaaatttgaaaaaactaattatGCACTGCTCTTAAAGA
AGAGGTGTCTGTTAGATTTGAGAAGACTTTCACAACTCTCAGAATTAGTC
GTCTTGACGTTACAATTGCAaaatagatttcaaaaataaggttaattttc
tttttagtaTTGACTATATTAAAGCCTGTATTGACTTTATTACATTCGTT
ACATTTAATTACATTACAAAAATAATAATGATTGCATTTgattcaaaaat
cttattttaaaGGCCTCCACTGACATGGGGCAACCAAGATCCAATGAGGC
CCATAAGCACAGCTGCATTGAATACAAACGCAAGTGAACGTTTGTCTGCT
CTTGCTACACCAAAGAAGAATTTCCAATTCGATCACCCACAGAAATGTAG
TCGGTATGGTATTGTTTGTATATTCTGTTTTCTTACCATTTTAGTCACAC
AGgggaaacattttattttttaatgactttttattgtaaaattttcacCG
TGGTTGTTCAACAATcggaaaagttttttcttttagcTCAAAAATCGACG
CATtgagaggaaaaaatctttgatGATAATTTTAAATGATTACTCTTTGC
TGACAAAAGTTATCATTCATTTCTAagaatttcgttttttttcagccatt
gTTTTGTTTACTCTGCTGGTCGCTCATCTGTCATTTGGGATGTCAGTCCA
CTGGCTATGAAATCGAACCCCAGTGAAAGAATTGAAGAACTTTCGAAACC
AAAGAAATTAACAATGGGTTATTCAGAAGATAGGTAAGTGTAAGATGACA
CTTTTTCCTTTATCAAGGCTATCTTTATATATAATCGAATTTCTTAGATT
CCATTTATTGTTGCCAAGTTTAATTTTGGCACATCTTTTTTTATCANAGT
CTTTATATATAATCGAATTTCCTAGATTCCATTTATTGTTGCCGAGTTTA
ATTTTGGCACATCTTTTTTTATCAATTGATACTTATTTCTTATTTAGGAC
AAGAATCCAACAAAAGTGATTTTAAAGTAATGCTCTAAATGAGTTTCATT
TCCGTCTCTTAGTTTAAAGAGTTCCGCCTCGAACTTGGgcaaaaaatcaa
taaagtatcataagtatcaagaatcttgttttttttttttgtgaaaagtc
tgATTTCTTTCTGAGAAGAAAAACCCTTCTGATAAATTAAATTAATGACA
TTCCATATCATTTCCTATCGTAGGTCAAGTTACGTTCTTGGTTGTGGGCG
ATCCTCTCCCATTTGGGGTATCACTTCATCAGCAAAGAAAGCTGCCCTCA
GTGATCGAGTAGAAGCTTTATCACACCCAAAGATTGCGCATAAAGAATAT
CAACCTCCTCGTGGtgtaagtcattaaaataatttttcatgttgttttct
tgaatattttaaaTCGGTGCTTTTTTCAACCTTTATGCTCAATGTTGAGG
AAACCTACATTTCCAGATTTTGATTTGCACGTTCCATTTCTGTTTCAACG
GTTCATCATAGTCTAAATTTACAATTGACTTAGGAGGTTTTCACTACTTT
TATCATCAACAATATGGAGCTTATAGCTTCTTTGATTAAAATATTCTTTC
TCTTAGGTTCAATGGCCAGTTTCCCAAAGTGCTAAAAGTGGAACCTTTCC
GGATCACATCGAGACTTTGTCAAGACCCAAAGAACGTAATGACGGTGCCC
ATAGAGATTCTGTATGGAAAGTCAGCAAAGGTGCTAGAAGTACTCAAGCC
TCCTCGCGTGTTCAGGTATTTTTCGTTCGTTTTGGTTGTCAGTCAATGAC
AAGCCTAGAAATCCATGTaatgatttcttcttttatatactGTTGGCGAA
ATGAATAGCATGGTTTTGACTATGAGTTTGAATTTCACATCTCCAAACGA
CAGtcgaaaacacagccaatcaaattttgctactctttcactggtcacac
tttcttagaaaaaaaaacaagtttctAAACTTGCTTTAACTATCTAATAA
GTCAGAATAgtgctaaattcgaatttcctaatgtaaatttttgaagcGAA
AATCTGCCTCACAGGTCAAACTCGTCTTGTATttatatcagattataaaa
atacaggaagGGTCTCTTGTCTATGAGAAACCTTGATAGCATTAACAATA
CTCGAAATACCTCACATAGAAATTGGtattttcaaccatttttgcaCGTA
CAGAAAGCTTATGCTTATTAGTTAGATTTTGAATTAAATAATACTAAACA
GTTTATGCGACTCTTATAATTAATCCAAGCATCCCCTGATTAGTAGGTCA
AAAATTGAATCTAACCTAAGGGCATACTTTGTATCCTCGTTTTGAAGACT
TAGGAAAACTTcctaaaaaaatttacaagcTCAGCGTATGCGGTGTgtac
cttttttttcaaaataaagcaaaaattatcaagaacaaaaaatttcattt
tgcgATAGGAATTAGCGCAGCCCAAGAAATATACTGACGGTTATCAACCA
AATCGCGAGGGAGAATCGAGAGTGGCTCGATCAGCGTTAAGGGCTGCTGC
AACCGAGCGTTTAAAAGAACTTTCTAACCCAATCATCCGAGACACTATGG
ATCATGTACAATTTGATCCCCTGGCTTTCCAAGTCAAAGAAACTGCACTG
AAAGGCAGAGTTCCTGATCGAATCCATGACCTTGCTATTCCTGTTATTCG
AGGTcccaaaaattagtttttctttttattttgtttgtttgtttgtttgt
ttgtttgttcgtGTCTTGTGAtatgtattttttgattttttgatttcttt
ttctttaacatGAAGGACTATCAGACGAGAGATCACTTACTTTAGCgctt
aaaaaaatgataaaattatgaactttggatttaaaaagctctaatttCCG
ATCTCTTTATCtgatcttttttcctttttgcaaTTTGATCTCCAATTTTC
TTGGAATTGACaaaatctctctaattcgaaaggcgatctttaaatttaaa
gtatatattttttttataatgattgaataattttttg

Coding sequence (CDS) from alignment at scaffold_343:180753..187739+

>TCONS_00060492 ID=TCONS_00060492|Name=TCONS_00060492|organism=Clytia hemisphaerica|type=CDS|length=7824bp|location=Sequence derived from alignment at scaffold_343:180753..187739+ (Clytia hemisphaerica)
ATGGGTGAAGTTAGTGTGGAAAGACCTCCAGtgcacaaatttacaaaaac
agCTGAAAGGGAAGCCATTGAGAGAAGAAGgCAGAGGTTCTCTCAACTAG
CTAcaccaaaaacatcaaaaactaTTTGGGCAACTGTCGAGCCTCCACTG
ACATGGGGCAACCAAGATCCAATGAGGCCCATAAGCACAGCTGCATTGAA
TACAAACGCAAGTGAACGTTTGTCTGCTCTTGCTACACCAAAGAAGAATT
TCCAATTCGATCACCCACAGAAATGTAGTCGccattgTTTTGTTTACTCT
GCTGGTCGCTCATCTGTCATTTGGGATGTCAGTCCACTGGCTATGAAATC
GAACCCCAGTGAAAGAATTGAAGAACTTTCGAAACCAAAGAAATTAACAA
TGGGTTATTCAGAAGATAGGTCAAGTTACGTTCTTGGTTGTGGGCGATCC
TCTCCCATTTGGGGTATCACTTCATCAGCAAAGAAAGCTGCCCTCAGTGA
TCGAGTAGAAGCTTTATCACACCCAAAGATTGCGCATAAAGAATATCAAC
CTCCTCGTGGtGTTCAATGGCCAGTTTCCCAAAGTGCTAAAAGTGGAACC
TTTCCGGATCACATCGAGACTTTGTCAAGACCCAAAGAACGTAATGACGG
TGCCCATAGAGATTCTGTATGGAAAGTCAGCAAAGGTGCTAGAAGTACTC
AAGCCTCCTCGCGTGTTCAGGAATTAGCGCAGCCCAAGAAATATACTGAC
GGTTATCAACCAAATCGCGAGGGAGAATCGAGAGTGGCTCGATCAGCGTT
AAGGGCTGCTGCAACCGAGCGTTTAAAAGAACTTTCTAACCCAATCATCC
GAGACACTATGGATCATGTACAATTTGATCCCCTGGCTTTCCAAGTCAAA
GAAACTGCACTGAAAGGCAGAGTTCCTGATCGAATCCATGACCTTGCTAT
TCCTGTTATTCGAGGTcccaaaaattagATGGGTGAAGTTAGTGTGGAAA
GACCTCCAGtgcacaaatttacaaaaacagCTGAAAGGGAAGCCATTGAG
AGAAGAAGgCAGAGGTTCTCTCAACTAGCTAcaccaaaaacatcaaaaac
taTTTGGGCAACTGTCGAGCCTCCACTGACATGGGGCAACCAAGATCCAA
TGAGGCCCATAAGCACAGCTGCATTGAATACAAACGCAAGTGAACGTTTG
TCTGCTCTTGCTACACCAAAGAAGAATTTCCAATTCGATCACCCACAGAA
ATGTAGTCGccattgTTTTGTTTACTCTGCTGGTCGCTCATCTGTCATTT
GGGATGTCAGTCCACTGGCTATGAAATCGAACCCCAGTGAAAGAATTGAA
GAACTTTCGAAACCAAAGAAATTAACAATGGGTTATTCAGAAGATAGGTC
AAGTTACGTTCTTGGTTGTGGGCGATCCTCTCCCATTTGGGGTATCACTT
CATCAGCAAAGAAAGCTGCCCTCAGTGATCGAGTAGAAGCTTTATCACAC
CCAAAGATTGCGCATAAAGAATATCAACCTCCTCGTGGtGTTCAATGGCC
AGTTTCCCAAAGTGCTAAAAGTGGAACCTTTCCGGATCACATCGAGACTT
TGTCAAGACCCAAAGAACGTAATGACGGTGCCCATAGAGATTCTGTATGG
AAAGTCAGCAAAGGTGCTAGAAGTACTCAAGCCTCCTCGCGTGTTCAGGA
ATTAGCGCAGCCCAAGAAATATACTGACGGTTATCAACCAAATCGCGAGG
GAGAATCGAGAGTGGCTCGATCAGCGTTAAGGGCTGCTGCAACCGAGCGT
TTAAAAGAACTTTCTAACCCAATCATCCGAGACACTATGGATCATGTACA
ATTTGATCCCCTGGCTTTCCAAGTCAAAGAAACTGCACTGAAAGGCAGAG
TTCCTGATCGAATCCATGACCTTGCTATTCCTGTTATTCGAGGTcccaaa
aattagATGGGTGAAGTTAGTGTGGAAAGACCTCCAGtgcacaaatttac
aaaaacagCTGAAAGGGAAGCCATTGAGAGAAGAAGgCAGAGGTTCTCTC
AACTAGCTAcaccaaaaacatcaaaaactaTTTGGGCAACTGTCGAGCCT
CCACTGACATGGGGCAACCAAGATCCAATGAGGCCCATAAGCACAGCTGC
ATTGAATACAAACGCAAGTGAACGTTTGTCTGCTCTTGCTACACCAAAGA
AGAATTTCCAATTCGATCACCCACAGAAATGTAGTCGccattgTTTTGTT
TACTCTGCTGGTCGCTCATCTGTCATTTGGGATGTCAGTCCACTGGCTAT
GAAATCGAACCCCAGTGAAAGAATTGAAGAACTTTCGAAACCAAAGAAAT
TAACAATGGGTTATTCAGAAGATAGGTCAAGTTACGTTCTTGGTTGTGGG
CGATCCTCTCCCATTTGGGGTATCACTTCATCAGCAAAGAAAGCTGCCCT
CAGTGATCGAGTAGAAGCTTTATCACACCCAAAGATTGCGCATAAAGAAT
ATCAACCTCCTCGTGGtGTTCAATGGCCAGTTTCCCAAAGTGCTAAAAGT
GGAACCTTTCCGGATCACATCGAGACTTTGTCAAGACCCAAAGAACGTAA
TGACGGTGCCCATAGAGATTCTGTATGGAAAGTCAGCAAAGGTGCTAGAA
GTACTCAAGCCTCCTCGCGTGTTCAGGAATTAGCGCAGCCCAAGAAATAT
ACTGACGGTTATCAACCAAATCGCGAGGGAGAATCGAGAGTGGCTCGATC
AGCGTTAAGGGCTGCTGCAACCGAGCGTTTAAAAGAACTTTCTAACCCAA
TCATCCGAGACACTATGGATCATGTACAATTTGATCCCCTGGCTTTCCAA
GTCAAAGAAACTGCACTGAAAGGCAGAGTTCCTGATCGAATCCATGACCT
TGCTATTCCTGTTATTCGAGGTcccaaaaattagATGGGTGAAGTTAGTG
TGGAAAGACCTCCAGtgcacaaatttacaaaaacagCTGAAAGGGAAGCC
ATTGAGAGAAGAAGgCAGAGGTTCTCTCAACTAGCTAcaccaaaaacatc
aaaaactaTTTGGGCAACTGTCGAGCCTCCACTGACATGGGGCAACCAAG
ATCCAATGAGGCCCATAAGCACAGCTGCATTGAATACAAACGCAAGTGAA
CGTTTGTCTGCTCTTGCTACACCAAAGAAGAATTTCCAATTCGATCACCC
ACAGAAATGTAGTCGccattgTTTTGTTTACTCTGCTGGTCGCTCATCTG
TCATTTGGGATGTCAGTCCACTGGCTATGAAATCGAACCCCAGTGAAAGA
ATTGAAGAACTTTCGAAACCAAAGAAATTAACAATGGGTTATTCAGAAGA
TAGGTCAAGTTACGTTCTTGGTTGTGGGCGATCCTCTCCCATTTGGGGTA
TCACTTCATCAGCAAAGAAAGCTGCCCTCAGTGATCGAGTAGAAGCTTTA
TCACACCCAAAGATTGCGCATAAAGAATATCAACCTCCTCGTGGtGTTCA
ATGGCCAGTTTCCCAAAGTGCTAAAAGTGGAACCTTTCCGGATCACATCG
AGACTTTGTCAAGACCCAAAGAACGTAATGACGGTGCCCATAGAGATTCT
GTATGGAAAGTCAGCAAAGGTGCTAGAAGTACTCAAGCCTCCTCGCGTGT
TCAGGAATTAGCGCAGCCCAAGAAATATACTGACGGTTATCAACCAAATC
GCGAGGGAGAATCGAGAGTGGCTCGATCAGCGTTAAGGGCTGCTGCAACC
GAGCGTTTAAAAGAACTTTCTAACCCAATCATCCGAGACACTATGGATCA
TGTACAATTTGATCCCCTGGCTTTCCAAGTCAAAGAAACTGCACTGAAAG
GCAGAGTTCCTGATCGAATCCATGACCTTGCTATTCCTGTTATTCGAGGT
cccaaaaattagATGGGTGAAGTTAGTGTGGAAAGACCTCCAGtgcacaa
atttacaaaaacagCTGAAAGGGAAGCCATTGAGAGAAGAAGgCAGAGGT
TCTCTCAACTAGCTAcaccaaaaacatcaaaaactaTTTGGGCAACTGTC
GAGCCTCCACTGACATGGGGCAACCAAGATCCAATGAGGCCCATAAGCAC
AGCTGCATTGAATACAAACGCAAGTGAACGTTTGTCTGCTCTTGCTACAC
CAAAGAAGAATTTCCAATTCGATCACCCACAGAAATGTAGTCGccattgT
TTTGTTTACTCTGCTGGTCGCTCATCTGTCATTTGGGATGTCAGTCCACT
GGCTATGAAATCGAACCCCAGTGAAAGAATTGAAGAACTTTCGAAACCAA
AGAAATTAACAATGGGTTATTCAGAAGATAGGTCAAGTTACGTTCTTGGT
TGTGGGCGATCCTCTCCCATTTGGGGTATCACTTCATCAGCAAAGAAAGC
TGCCCTCAGTGATCGAGTAGAAGCTTTATCACACCCAAAGATTGCGCATA
AAGAATATCAACCTCCTCGTGGtGTTCAATGGCCAGTTTCCCAAAGTGCT
AAAAGTGGAACCTTTCCGGATCACATCGAGACTTTGTCAAGACCCAAAGA
ACGTAATGACGGTGCCCATAGAGATTCTGTATGGAAAGTCAGCAAAGGTG
CTAGAAGTACTCAAGCCTCCTCGCGTGTTCAGGAATTAGCGCAGCCCAAG
AAATATACTGACGGTTATCAACCAAATCGCGAGGGAGAATCGAGAGTGGC
TCGATCAGCGTTAAGGGCTGCTGCAACCGAGCGTTTAAAAGAACTTTCTA
ACCCAATCATCCGAGACACTATGGATCATGTACAATTTGATCCCCTGGCT
TTCCAAGTCAAAGAAACTGCACTGAAAGGCAGAGTTCCTGATCGAATCCA
TGACCTTGCTATTCCTGTTATTCGAGGTcccaaaaattagATGGGTGAAG
TTAGTGTGGAAAGACCTCCAGtgcacaaatttacaaaaacagCTGAAAGG
GAAGCCATTGAGAGAAGAAGgCAGAGGTTCTCTCAACTAGCTAcaccaaa
aacatcaaaaactaTTTGGGCAACTGTCGAGCCTCCACTGACATGGGGCA
ACCAAGATCCAATGAGGCCCATAAGCACAGCTGCATTGAATACAAACGCA
AGTGAACGTTTGTCTGCTCTTGCTACACCAAAGAAGAATTTCCAATTCGA
TCACCCACAGAAATGTAGTCGccattgTTTTGTTTACTCTGCTGGTCGCT
CATCTGTCATTTGGGATGTCAGTCCACTGGCTATGAAATCGAACCCCAGT
GAAAGAATTGAAGAACTTTCGAAACCAAAGAAATTAACAATGGGTTATTC
AGAAGATAGGTCAAGTTACGTTCTTGGTTGTGGGCGATCCTCTCCCATTT
GGGGTATCACTTCATCAGCAAAGAAAGCTGCCCTCAGTGATCGAGTAGAA
GCTTTATCACACCCAAAGATTGCGCATAAAGAATATCAACCTCCTCGTGG
tGTTCAATGGCCAGTTTCCCAAAGTGCTAAAAGTGGAACCTTTCCGGATC
ACATCGAGACTTTGTCAAGACCCAAAGAACGTAATGACGGTGCCCATAGA
GATTCTGTATGGAAAGTCAGCAAAGGTGCTAGAAGTACTCAAGCCTCCTC
GCGTGTTCAGGAATTAGCGCAGCCCAAGAAATATACTGACGGTTATCAAC
CAAATCGCGAGGGAGAATCGAGAGTGGCTCGATCAGCGTTAAGGGCTGCT
GCAACCGAGCGTTTAAAAGAACTTTCTAACCCAATCATCCGAGACACTAT
GGATCATGTACAATTTGATCCCCTGGCTTTCCAAGTCAAAGAAACTGCAC
TGAAAGGCAGAGTTCCTGATCGAATCCATGACCTTGCTATTCCTGTTATT
CGAGGTcccaaaaattagATGGGTGAAGTTAGTGTGGAAAGACCTCCAGt
gcacaaatttacaaaaacagCTGAAAGGGAAGCCATTGAGAGAAGAAGgC
AGAGGTTCTCTCAACTAGCTAcaccaaaaacatcaaaaactaTTTGGGCA
ACTGTCGAGCCTCCACTGACATGGGGCAACCAAGATCCAATGAGGCCCAT
AAGCACAGCTGCATTGAATACAAACGCAAGTGAACGTTTGTCTGCTCTTG
CTACACCAAAGAAGAATTTCCAATTCGATCACCCACAGAAATGTAGTCGc
cattgTTTTGTTTACTCTGCTGGTCGCTCATCTGTCATTTGGGATGTCAG
TCCACTGGCTATGAAATCGAACCCCAGTGAAAGAATTGAAGAACTTTCGA
AACCAAAGAAATTAACAATGGGTTATTCAGAAGATAGGTCAAGTTACGTT
CTTGGTTGTGGGCGATCCTCTCCCATTTGGGGTATCACTTCATCAGCAAA
GAAAGCTGCCCTCAGTGATCGAGTAGAAGCTTTATCACACCCAAAGATTG
CGCATAAAGAATATCAACCTCCTCGTGGtGTTCAATGGCCAGTTTCCCAA
AGTGCTAAAAGTGGAACCTTTCCGGATCACATCGAGACTTTGTCAAGACC
CAAAGAACGTAATGACGGTGCCCATAGAGATTCTGTATGGAAAGTCAGCA
AAGGTGCTAGAAGTACTCAAGCCTCCTCGCGTGTTCAGGAATTAGCGCAG
CCCAAGAAATATACTGACGGTTATCAACCAAATCGCGAGGGAGAATCGAG
AGTGGCTCGATCAGCGTTAAGGGCTGCTGCAACCGAGCGTTTAAAAGAAC
TTTCTAACCCAATCATCCGAGACACTATGGATCATGTACAATTTGATCCC
CTGGCTTTCCAAGTCAAAGAAACTGCACTGAAAGGCAGAGTTCCTGATCG
AATCCATGACCTTGCTATTCCTGTTATTCGAGGTcccaaaaattagATGG
GTGAAGTTAGTGTGGAAAGACCTCCAGtgcacaaatttacaaaaacagCT
GAAAGGGAAGCCATTGAGAGAAGAAGgCAGAGGTTCTCTCAACTAGCTAc
accaaaaacatcaaaaactaTTTGGGCAACTGTCGAGCCTCCACTGACAT
GGGGCAACCAAGATCCAATGAGGCCCATAAGCACAGCTGCATTGAATACA
AACGCAAGTGAACGTTTGTCTGCTCTTGCTACACCAAAGAAGAATTTCCA
ATTCGATCACCCACAGAAATGTAGTCGccattgTTTTGTTTACTCTGCTG
GTCGCTCATCTGTCATTTGGGATGTCAGTCCACTGGCTATGAAATCGAAC
CCCAGTGAAAGAATTGAAGAACTTTCGAAACCAAAGAAATTAACAATGGG
TTATTCAGAAGATAGGTCAAGTTACGTTCTTGGTTGTGGGCGATCCTCTC
CCATTTGGGGTATCACTTCATCAGCAAAGAAAGCTGCCCTCAGTGATCGA
GTAGAAGCTTTATCACACCCAAAGATTGCGCATAAAGAATATCAACCTCC
TCGTGGtGTTCAATGGCCAGTTTCCCAAAGTGCTAAAAGTGGAACCTTTC
CGGATCACATCGAGACTTTGTCAAGACCCAAAGAACGTAATGACGGTGCC
CATAGAGATTCTGTATGGAAAGTCAGCAAAGGTGCTAGAAGTACTCAAGC
CTCCTCGCGTGTTCAGGAATTAGCGCAGCCCAAGAAATATACTGACGGTT
ATCAACCAAATCGCGAGGGAGAATCGAGAGTGGCTCGATCAGCGTTAAGG
GCTGCTGCAACCGAGCGTTTAAAAGAACTTTCTAACCCAATCATCCGAGA
CACTATGGATCATGTACAATTTGATCCCCTGGCTTTCCAAGTCAAAGAAA
CTGCACTGAAAGGCAGAGTTCCTGATCGAATCCATGACCTTGCTATTCCT
GTTATTCGAGGTcccaaaaattag

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_038053	XLOC_038053	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00060492-protein	TCONS_00060492-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_343	supercontig	scaffold_343:180753..187739 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.59243	6.17592	3.71554	3.67487	58.3481	43.6486	19.8118	20.1789	10.5097	14.5332	9.03438	9.40384	2.88333	4.24384	1.43382	2.46216	2.39885	3.08204	5.39032	3.85841	2.5915	2.87376	4.73488	4.04422	28.4821	17.1131	5.43933	6.63208	2.29178	2.37226

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR006623	THEG

Blast

[Close]

BLAST of TCONS_00060492 vs. Swiss-Prot (Human)
Match: THEGL (Testicular haploid expressed gene protein-like OS=Homo sapiens GN=THEGL PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.003e-22
Identity = 88/291 (30.24%), Postives = 138/291 (47.42%), Query Frame = 2

Query: 3476 KTIWATVEPPLTWGNQDPMRPISTAALNTNASERLSALATPKKNFQFDHPQKCSRHCFVYSAGRSSVIWDVSPLAMKSNPSERIEELSKPKKLTMGYSEDRSSYVLGCGRSSPIWGITSSAKKAALSD---RVEALSHPKIAHKEYQPPRGVQWPVSQSAKSGTFPDHIETLSRPKERNDGAHRDS------VWKVSKGARSTQASSRVQELAQPKKYTDGYQPNREGXXXXXXXXXXXXXXXXXKELSNPIIRDTMDHVQFDPLAFQVKETALKGRVPDRIHDLAIPVIR 4321
            K  W T +  L WGNQDP+RP+S  AL    ++RL  LA PK+      P +     + +S GR SVIW+++P A+   PS+RI+ LS+P           + +   C  + P +   S+     +SD   R+  LS  K     Y P + +Q  +S S  S      I  L+ P+ + +G   +       +  V   A   + S R   LA+ K     Y P+R+    V+ +   + A+ R++EL+NP  R  +  V +DP  F+ K  ALK +   RI +L+ P+ R
Sbjct:  190 KKQWGTPDRKLFWGNQDPIRPVSQGALKAQLTKRLENLAQPKEVSCHYVPNRAQ---YYHSCGRESVIWEITPPALFRQPSKRIQRLSQP-----------NGFKRQCLLNRP-FSDNSARDSLRISDPSPRILQLSVAKGTDPNYHPSKKMQTKISLSTLSAIATPRIIELAHPRIKLEGLCYERQRSELPIRPVPPAAMIAKPSPRTIALAKSKSVHQDYLPDRDAHWPVSYATTHSKASPRIQELANPNKRAPVRIVYYDPDVFKTKPAALKAQCSQRIWELSQPLTR 465

The following BLAST results are available for this feature:

BLAST of TCONS_00060492 vs. Swiss-Prot (Human)

BLAST of TCONS_00060492 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
THEGL	1.003e-22	30.24	Testicular haploid expressed gene protein-like OS=...	[more]

You are here

TCONS_00060492 (transcript) - C. hemisphaerica