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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060491 ID=TCONS_00060491|Name=TCONS_00060491|organism=Clytia hemisphaerica|type=transcript|length=2409bp
CTTCAATGAAAAGTGTATTAGTGTATCATAAGATAGCTTTGTCTTGTCAA
TTGTATTTTAATTTGTGGTCATCATTTATAAACTTAATACTATTTACCGA
ATTGATATTTAAATGGGTGAAGAATGATCGGTCAGAAATCAGTTATTTGT
CGACCAGCAGTAAACCAAGTCAAAGAAGGGAAGAAAAAGACATTCCAAGG
TCAGTTGGCTTAATCATATTAagcgttggaaagatattgtgTTTGACGGT
GACAAGATTGAAGTAAAAACATAATACCTGTGTGATAAGTCACCCTAGCC
GTTAGGTGAACTCACACAAACTTATAAATCGTAGAAATATATTCAGAAGA
ATGAAGATAGCTTATTCGTCAACTGAAATGCTTGGCACAATTAACCGTCG
AAAGATGCTTGGTGATTTGACGTCATCTTGGAAAAACAAACCAACCTCAC
CTCCATTACCTGCATTCAAATCTTCTTGTTGGTGTCACAATGAGCGACCA
AGTGAGCACTGCATACCTAGCCCAACACATACGAAAGAAGATATACATCG
CACCAGAAGCCCAATATATCATCATCGCGTACCAAGTCCCGACACACGGA
GACATAATCAGAGTCCATTACACAGTCAACGAATGCTTCATACACAGAGT
GAAGAGCCTAAACAAAAACCAGATTTAAACagtcaaaaagaagaatacCG
CCATTCTTATTCAATTCAACGCCATCTTTCAAGTTCACATGCAAGCGATT
TTTCCCGAAGATCACCAAAGTCTGAAACTCACGAAATCCCAAGCCCTACC
CATACACAAGAGGAGATTCATCGAAAAAGTGCTGCGAGTCCATCACTATA
TCGTAGATCAATCGTCACTCCCGGTGCAACCAAAGAAGACTCGAAAAACA
AACGAGAACTGAAACAGCGATACCAACGCTCACGCTCGCGTTCACCAGTA
ACGAAAATGTCTGACAGATGTACAGTATCACCACGGCAACGCTTTACCCC
ATCACCACCTCAAACCGCCAAAACAGCCCATGATGAAAGAGCTGAGATTA
CAAACATACATCGGAGACAAGCAACACCCATAAGTCGCTACAACTGCTAC
GAACGACCTTTATCACCAACCCGCCCTACTATAGTACACCCACAATTCAA
TCGTAAACACGACTTAACTCCGCCCTTACAATCACCCATACCACCCTTAC
CAGCCCTACCTCATCGGGTATTTGAACATAGCTGTAAAGATTGTTGCTGT
ATTGAACCTTCCCAACCCACCTACTTTCGTTACCCACCGCCTCCACCGCC
CACANTTGTTGCTGTATTGAACCTTCCCCACCCACCTACTTTCGTTATCC
ACCGCCTCCACCGCCCACACTTCCTCCAGCAATGCAAATCAAACATTCGT
ATTATCCAAATTTCTACCCAAGACCTTTCTATTATGATTTTCACTTCGAC
TATGATCGTGATGGTTTGAAGAGATTCCGTACAAGTTTCAATACAACACA
ACTTACGGAACTGGAACGTGAATTCCAATCCAATAAATATTTGACAAGAC
GCCGACGTGTCGAACTTGCTGTCGGTTTGAACCTGAGTGAAAAACAAGTC
AAAGTATGGTTTCAAAATCGTagaatgaaacataaaaaacaaGTGCGTTT
GGATAGCAgtgatgatgatgaagatgaagtGGCCGATAGACGGAATGAAA
TCAAAAGTCCTTCCGGACACCATGTAATCTAAAAGAATATCAAGATTTGT
TTATCATGAACAtgagtaccttaagggaagaaacttTGGCGGGAATCTAA
CTTGGCAGCGGCCGAAAAAGtgtttcagagggaatttaatttggcggatc
gcttgaaaaattaaattttgccgGAACttgatttggcgaattttgaccaa
atccgccaaaatttcttcccttaaggtactcaTGTTCATGATAAACAAAT
CTTTCGAGAAATTTTAAAAGGGATGGGACTAAGACTTtagcgaaaaaaaa
ttataccaaCAATACCATTAAATATACATCAAGGTAgagcaaaataattt
tcaaattactAGAAAAATAGTCGACTtccgctaattcgaacttctgtaTT
TCGATTTATAATTCGAATTAAACTTCCGCCCTCAACCAAAGTAAAAATTT
ACTAAAAACTatctataattcgaagaaatAAGGTTTCCCAGGCTCGAATG
AGACAGTACTGTAACACAAAATGGaaattaagtaaaaaaaaatgtttgga
aaacttttgtgcTTAGGATAGAACAAGTTATTTCTGGAAACTAAATGAAA
GTATTTAATAGTTCAGctttaatttttatatttttatttgattttatatt
gtgcataaaattgtaaatattgtaaaaaattgtaTAGTGTCTACACCTTG
TCATTTCAA Run BLAST on NCBI protein sequence of TCONS_00060491-protein >TCONS_00060491-protein ID=TCONS_00060491-protein|Name=TCONS_00060491-protein|organism=Clytia hemisphaerica|type=polypeptide|length=372bp
MKIAYSSTEMLGTINRRKMLGDLTSSWKNKPTSPPLPAFKSSCWCHNERP
SEHCIPSPTHTKEDIHRTRSPIYHHRVPSPDTRRHNQSPLHSQRMLHTQS
EEPKQKPDLNSQKEEYRHSYSIQRHLSSSHASDFSRRSPKSETHEIPSPT
HTQEEIHRKSAASPSLYRRSIVTPGATKEDSKNKRELKQRYQRSRSRSPV
TKMSDRCTVSPRQRFTPSPPQTAKTAHDERAEITNIHRRQATPISRYNCY
ERPLSPTRPTIVHPQFNRKHDLTPPLQSPIPPLPALPHRVFEHSCKDCCC
IEPSQPTYFRYPPPPPPTXVAVLNLPHPPTFVIHRLHRPHFLQQCKSNIR
IIQISTQDLSIMIFTSTMIVMV Run BLAST on NCBI transcript from alignment at scaffold_343:134024..137007+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060491 ID=TCONS_00060491|Name=TCONS_00060491|organism=Clytia hemisphaerica|type=transcript|length=2984bp|location=Sequence derived from alignment at scaffold_343:134024..137007+ (Clytia hemisphaerica)
CTTCAATGAAAAGTGTATTAGTGTATCATAAGATAGCTTTGTCTTGTCAA
TTGTATTTTAATTTGTGGTCATCATTTATAAACTTAATACTATTTACCGA
ATTGATATTTAAATGGGTGAAGAATGATCGGTCAGAAATCAGTTATTTGT
CGACCAGCAGTAAACCAAGTCAAAGAAGGGAAGAAAAAGACATTCCAAGG
TCAGTTGGCTTAATCATATTAagcgttggaaagatattgtgTTTGACGGT
GACAAGATTGAAGTAAAAACATAATACCTGTGTGATAAGTCACCCTAGCC
GTTAGGTGAACTCACACAAACTTATAAATCGTAGAAATATATTCAGAAGA
ATGAAGATAGCTTATTCGTCAACTGAAATGCTTGGCACAATTAACCGTCG
AAAGATGCTTGGTGATTTGACGTCATCTTGGAAAAACAAACCAACCTCAC
CTCCATTACCTGCATTCAAATCTTCTTGTTGGTGTCACAATGAGCGACCA
AGTGAGCACTGCATACCTAGCCCAACACATACGAAAGAAGATATACATCG
CACCAGAAGCCCAATATATCATCATCGCGTACCAAGTCCCGACACACGGA
GACATAATCAGAGTCCATTACACAGTCAACGAATGCTTCATACACAGAGT
GAAGAGCCTAAACAAAAACCAGATTTAAACagtcaaaaagaagaatacCG
CCATTCTTATTCAATTCAACGCCATCTTTCAAGTTCACATGCAAGCGATT
TTTCCCGAAGATCACCAAAGTCTGAAACTCACGAAATCCCAAGCCCTACC
CATACACAAGAGGAGATTCATCGAAAAAGTGCTGCGAGTCCATCACTATA
TCGTAGATCAATCGTCACTCCCGGTGCAACCAAAGAAGACTCGAAAAACA
AACGAGAACTGAAACAGCGATACCAACGCTCACGCTCGCGTTCACCAGTA
ACGAAAATGTCTGACAGATGTACAGTATCACCACGGCAACGCTTTACCCC
ATCACCACCTCAAACCGCCAAAACAGCCCATGATGAAAGAGCTGAGATTA
CAAACATACATCGGAGACAAGCAACACCCATAAGTCGCTACAACTGCTAC
GAACGACCTTTATCACCAACCCGCCCTACTATAGTACACCCACAATTCAA
TCGTAAACACGACTTAACTCCGCCCTTACAATCACCCATACCACCCTTAC
CAGCCCTACCTCATCGGGTATTTGAACATAGCTGTAAAGATTGTTGCTGT
ATTGAACCTTCCCAACCCACCTACTTTCGTTACCCACCGCCTCCACCGCC
CACANTTGTTGCTGTATTGAACCTTCCCCACCCACCTACTTTCGTTATCC
ACCGCCTCCACCGCCCACACTTCCTCCAGCAATGCAAATCAAACATTCGT
ATTATCCAAATTTCTACCCAAGACCTTTCTATTATGGTAAGAATATTACT
ATTTCAAAAGCCTCCGAatagggacaagctggagtttttacaagctctta
tttgatttggttggtcgttggGATGTAATAAAAGagtcttattacttttt
ctaaagaacgcgtcatctctatcactttaaatgaccaattagtgaagtat
cttgtaaaaactccaaggcatctctcCGAATAAGGTTGAATATCCTACTT
AATAGAAAAGAATCCAACTTTCATACCTCTGTCTTCTCGTTGTCATATAA
TCTTCATATCGCGAAACTGGAAAACGAAAAAAAACGTTGGTCATAACGAG
TACATAGCCAATTCTCAACCAATAAAGCTGTTTCCTTAACAAAAAATATA
TCGCTGCGATTCCAGTGAGTAACATGCGACAGTGAACTTCTCTCAGGTGT
CTTCAAAAAGCGGTTATTAGGCACCTAAAAATCTGAGAGTATAATGTGAG
GCTCttcaaaatttgattatttgaaattcaaactTNTCTGAGAGTATAAT
GCAAGGCTCTTCAaaatttgattgtttgaaattCAAACTCTTCTCTTCTA
TTTATATACAGATTTTCACTTCGACTATGATCGTGATGGTTTGAAGAGAT
TCCGTACAAGTTTCAATACAACACAACTTACGGAACTGGAACGTGAATTC
CAATCCAATAAATATTTGACAAGACGCCGACGTGTCGAACTTGCTGTCGG
TTTGAACCTGAGTGAAAAACAAGTCAAAGTATGGTTTCAAAATCGTagaa
tgaaacataaaaaacaaGTGCGTTTGGATAGCAgtgatgatgatgaagat
gaagtGGCCGATAGACGGAATGAAATCAAAAGTCCTTCCGGACACCATGT
AATCTAAAAGAATATCAAGATTTGTTTATCATGAACAtgagtaccttaag
ggaagaaacttTGGCGGGAATCTAACTTGGCAGCGGCCGAAAAAGtgttt
cagagggaatttaatttggcggatcgcttgaaaaattaaattttgccgGA
ACttgatttggcgaattttgaccaaatccgccaaaatttcttcccttaag
gtactcaTGTTCATGATAAACAAATCTTTCGAGAAATTTTAAAAGGGATG
GGACTAAGACTTtagcgaaaaaaaattataccaaCAATACCATTAAATAT
ACATCAAGGTAgagcaaaataattttcaaattactAGAAAAATAGTCGAC
TtccgctaattcgaacttctgtaTTTCGATTTATAATTCGAATTAAACTT
CCGCCCTCAACCAAAGTAAAAATTTACTAAAAACTatctataattcgaag
aaatAAGGTTTCCCAGGCTCGAATGAGACAGTACTGTAACACAAAATGGa
aattaagtaaaaaaaaatgtttggaaaacttttgtgcTTAGGATAGAACA
AGTTATTTCTGGAAACTAAATGAAAGTATTTAATAGTTCAGctttaattt
ttatatttttatttgattttatattgtgcataaaattgtaaatattgtaa
aaaattgtaTAGTGTCTACACCTTGTCATTTCAA Coding sequence (CDS) from alignment at scaffold_343:134024..137007+ >TCONS_00060491 ID=TCONS_00060491|Name=TCONS_00060491|organism=Clytia hemisphaerica|type=CDS|length=2238bp|location=Sequence derived from alignment at scaffold_343:134024..137007+ (Clytia hemisphaerica)
ATGAAGATAGCTTATTCGTCAACTGAAATGCTTGGCACAATTAACCGTCG
AAAGATGCTTGGTGATTTGACGTCATCTTGGAAAAACAAACCAACCTCAC
CTCCATTACCTGCATTCAAATCTTCTTGTTGGTGTCACAATGAGCGACCA
AGTGAGCACTGCATACCTAGCCCAACACATACGAAAGAAGATATACATCG
CACCAGAAGCCCAATATATCATCATCGCGTACCAAGTCCCGACACACGGA
GACATAATCAGAGTCCATTACACAGTCAACGAATGCTTCATACACAGAGT
GAAGAGCCTAAACAAAAACCAGATTTAAACagtcaaaaagaagaatacCG
CCATTCTTATTCAATTCAACGCCATCTTTCAAGTTCACATGCAAGCGATT
TTTCCCGAAGATCACCAAAGTCTGAAACTCACGAAATCCCAAGCCCTACC
CATACACAAGAGGAGATTCATCGAAAAAGTGCTGCGAGTCCATCACTATA
TCGTAGATCAATCGTCACTCCCGGTGCAACCAAAGAAGACTCGAAAAACA
AACGAGAACTGAAACAGCGATACCAACGCTCACGCTCGCGTTCACCAGTA
ACGAAAATGTCTGACAGATGTACAGTATCACCACGGCAACGCTTTACCCC
ATCACCACCTCAAACCGCCAAAACAGCCCATGATGAAAGAGCTGAGATTA
CAAACATACATCGGAGACAAGCAACACCCATAAGTCGCTACAACTGCTAC
GAACGACCTTTATCACCAACCCGCCCTACTATAGTACACCCACAATTCAA
TCGTAAACACGACTTAACTCCGCCCTTACAATCACCCATACCACCCTTAC
CAGCCCTACCTCATCGGGTATTTGAACATAGCTGTAAAGATTGTTGCTGT
ATTGAACCTTCCCAACCCACCTACTTTCGTTACCCACCGCCTCCACCGCC
CACANTTGTTGCTGTATTGAACCTTCCCCACCCACCTACTTTCGTTATCC
ACCGCCTCCACCGCCCACACTTCCTCCAGCAATGCAAATCAAACATTCGT
ATTATCCAAATTTCTACCCAAGACCTTTCTATTATGATTTTCACTTCGAC
TATGATCGTGATGGTTTGAATGAAGATAGCTTATTCGTCAACTGAAATGC
TTGGCACAATTAACCGTCGAAAGATGCTTGGTGATTTGACGTCATCTTGG
AAAAACAAACCAACCTCACCTCCATTACCTGCATTCAAATCTTCTTGTTG
GTGTCACAATGAGCGACCAAGTGAGCACTGCATACCTAGCCCAACACATA
CGAAAGAAGATATACATCGCACCAGAAGCCCAATATATCATCATCGCGTA
CCAAGTCCCGACACACGGAGACATAATCAGAGTCCATTACACAGTCAACG
AATGCTTCATACACAGAGTGAAGAGCCTAAACAAAAACCAGATTTAAACa
gtcaaaaagaagaatacCGCCATTCTTATTCAATTCAACGCCATCTTTCA
AGTTCACATGCAAGCGATTTTTCCCGAAGATCACCAAAGTCTGAAACTCA
CGAAATCCCAAGCCCTACCCATACACAAGAGGAGATTCATCGAAAAAGTG
CTGCGAGTCCATCACTATATCGTAGATCAATCGTCACTCCCGGTGCAACC
AAAGAAGACTCGAAAAACAAACGAGAACTGAAACAGCGATACCAACGCTC
ACGCTCGCGTTCACCAGTAACGAAAATGTCTGACAGATGTACAGTATCAC
CACGGCAACGCTTTACCCCATCACCACCTCAAACCGCCAAAACAGCCCAT
GATGAAAGAGCTGAGATTACAAACATACATCGGAGACAAGCAACACCCAT
AAGTCGCTACAACTGCTACGAACGACCTTTATCACCAACCCGCCCTACTA
TAGTACACCCACAATTCAATCGTAAACACGACTTAACTCCGCCCTTACAA
TCACCCATACCACCCTTACCAGCCCTACCTCATCGGGTATTTGAACATAG
CTGTAAAGATTGTTGCTGTATTGAACCTTCCCAACCCACCTACTTTCGTT
ACCCACCGCCTCCACCGCCCACANTTGTTGCTGTATTGAACCTTCCCCAC
CCACCTACTTTCGTTATCCACCGCCTCCACCGCCCACACTTCCTCCAGCA
ATGCAAATCAAACATTCGTATTATCCAAATTTCTACCCAAGACCTTTCTA
TTATGATTTTCACTTCGACTATGATCGTGATGGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00060491-exon-scaffold_343-1491911889:134024..135459 | TCONS_00060491-exon-scaffold_343-1491911889:134024..135459 | Clytia hemisphaerica | exon |
| TCONS_00060491-exon-scaffold_343-1510915933:134024..135459 | TCONS_00060491-exon-scaffold_343-1510915933:134024..135459 | Clytia hemisphaerica | exon |
| TCONS_00060491-exon-scaffold_343-1575043694:134024..135459 | TCONS_00060491-exon-scaffold_343-1575043694:134024..135459 | Clytia hemisphaerica | exon |
| TCONS_00060491-exon-scaffold_343-1491911889:136035..137007 | TCONS_00060491-exon-scaffold_343-1491911889:136035..137007 | Clytia hemisphaerica | exon |
| TCONS_00060491-exon-scaffold_343-1510915933:136035..137007 | TCONS_00060491-exon-scaffold_343-1510915933:136035..137007 | Clytia hemisphaerica | exon |
| TCONS_00060491-exon-scaffold_343-1575043694:136035..137007 | TCONS_00060491-exon-scaffold_343-1575043694:136035..137007 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_343 | supercontig | scaffold_343:134024..137007 + |
Blast
BLAST of TCONS_00060491 vs. Swiss-Prot (Human)
Match: GSX1 (GS homeobox 1 OS=Homo sapiens GN=GSX1 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.975e-21 Identity = 42/58 (72.41%), Postives = 50/58 (86.21%), Query Frame = 2
Query: 1469 KRFRTSFNTTQLTELEREFQSNKYLTRRRRVELAVGLNLSEKQVKVWFQNRRMKHKKQ 1642
KR RT+F +TQL ELEREF SN YL+R RR+E+A LNLSEKQVK+WFQNRR+KHKK+
Sbjct: 148 KRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKE 205
The following BLAST results are available for this feature:
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