TCONS_00060488 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060488
Unique NameTCONS_00060488
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1762

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060488 ID=TCONS_00060488|Name=TCONS_00060488|organism=Clytia hemisphaerica|type=transcript|length=1762bp
GGCTACtgaaaaaataatcaatttttaaaaatggcagccaaatcttgttt
tgaaaagaagCCGGTGTTTTCGCAAAGTTGTTAAATATTGTGACTTTTTg
gtgtttcaaagaaaattacGAAAGTTTAGCTTCAAATATCTTCGCAATCT
TAAGGCTTAAGACTTTCTtagccttataaaaggttgaacAAAGGTTCGAA
GCTGCTTACTACCGTTATATTTCTAGTGTTTCGTTTTTCTTTGGttccaa
aattctcaatttttgttAACAATGGCTTGTGCTGCTCTCAAGAGACCTCA
CAACTTTGATCTTCTTGGTAACAGTCCTGATCATAAAGTCAGTGCATCTC
CTAAAAGGAGAAGATGTGGAGCTGTAGTTACATCTTGTTCGTCAACAAGT
ATTTCTCCTTTCCTTGAAGCTACTCCAAAATTATGcaaagATGAGTTGGC
CAAAAATGTACAAGATGAATGGAGAAGGATACAACGCCGTAGGAGATTGG
CTTGtccctcatcacctcaaaacAATACATCCAACCTTCAGAGTCTTTTT
GGATCCCCAACTTCCTTCAACACAGGATATTGGTCACCTCCTAGAGGTTC
AATGTCACCATGTAGTAGTTCCATGTCTCCCCCCAGAACCACCACTGAGC
GTTCAGAACAGACCAGTTTGAATGTCAAACAAGTCGTTTCGCTCTGTGAA
AGATTGTGGAAAGAACGCGAGGATAAACTTCGTGAAGAATATGACAAAGT
TCTCAATGATAGACTGTCAGAACAGTACGACTCCTTTTTGAAGTTCACTC
AAGATCAAATAATGaggaaatatcaaaattcatcATGTAGTTACGTTTCG
TAACGTGCTTTGTCATCTGGACGAATGAATTGTAAATATGTCATTTAAAA
ATTTGTATTTCCCTCATTATTATTAGTTTGAATAAGACATTGTTTCAAAG
AACCTTATTAATTTTGGTATTTAGTACTTTAGAAAGCACTTTCATGTCTC
AGAAAAGATCTGAAAGGAActaaatttgagatttttgctcAGAATGAGGT
GATGAGactgtaaaaaaactttcttgacatttttcaaatttgaagcCATT
ACTTAATGTCAAAATGGTGCTAGgaatttattttgattgttcaTAGCAAT
TTTACTAcagtattttatttttgttccaattATTTCTATTATATTCAGTT
GCTGTGGGAGATTGAGCCTCTCTCCAAGCAAATTGGAGTTCCAGATGGAA
TTATTGACTTTCTGTATCATTTAGTTCCACTAATTTGTATCATAGTTTAT
GTTAggagattttatttttgttccatttttcttcttttacttAAAAGCAT
ATAGGTTAAATTTTGAACCACTTTTGATATGGTGAATTTTacttcaagaa
ttttggaatgTATTCTTTTCTGGGACAATTTCATTATATGTATACTTTCT
ATAAACTGCCTAACTAAAGACTCTTAAGGTTTTTTCGAAAAGATATTGAA
GAAAAGAATTGCATCTTTCTGTTGCTATTACCATAGTCGAAGCTTCCAAA
TTAGCAGTCTTCGAGACGGAATGATTTCTTACTCAATTgtagtatatatt
tttgaatgcttgataaattttagatttttagtgAGTTTAGTATATCCATc
agttttattattatttcaatTACTATTACTGGAAATATGGCGTTCTACTG
AATTTTAATATTGTATTATATTATTTGTTcacaaaataaactttttttga
gtATAAAAAACT
Run BLAST on NCBI

transcript from alignment at scaffold_343:90522..108035+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060488 ID=TCONS_00060488|Name=TCONS_00060488|organism=Clytia hemisphaerica|type=transcript|length=17514bp|location=Sequence derived from alignment at scaffold_343:90522..108035+ (Clytia hemisphaerica)
GGCTACtgaaaaaataatcaatttttaaaaatggcagccaaatcttgttt tgaaaagaagCCGGTGTTTTCGCAAAGTTGTTAAATATTGTGACTTTTTg gtgtttcaaagaaaattacGAAAGTTTAGCTTCAAATATCTTCGCAATCT TAAGGCTTAAGACTTTCTtagccttataaaaggttgaacAAAGGTTCGAA GCTGCTTACTACCGTTATATTTCTAGTGTTTCGTTTTTCTTTGGttccaa aattctcaatttttgttAACAATGGCTTGTGCTGCTCTCAAGAGACCTCA CAACTTTGATCTTCTTGGTAACAGTCCTGATCATAAAGTCAGTGCATCTC CTAAAAGGAGAAGATGTGGAGCTGTAGTTACATCTTGTTCGTCAACAAGT ATTTCTCCTTTCCTTGAAGCTACTCCAAAATTATGcaaaggtaatttttt tgcattgcttggaaatttgattgaaagaaaatttatatGAATCATACTGT AATACTATTCTGATTTAAAACAGTTGAATATCAAGATGATTGAGTTTTCT CTGTTGAAAATAATTGCTTTGATTTTTATTTGGAGCCATCTTCTTTAATA AGATATGTAATGCGCGAGCAGCAGTAGCAGAGCAGTGCGTGTCCTCTatt aggaccctgccgacgcaccggacttaacgaacaccggacacgcaaaAATC CGgtgtaaaagagaattttttttaccaccggacataAGGAAGTcagatgt ccggtgtcggagaaggatattttttcccaccggacaatcaaatgacaccg gacttattacgtccggtgtagcgaaaggatactttcttccaccggacaaa tacaccggacagtccggtgcgtcggcagggtcctcctCTATTCTGACGAC AGGTTGGGTCAGGCCCAGTTGAtagtttggttcgtgtcctccGGTCAACT CTaagtatttgagaaaaaatggttatcgattcaaagaaaaaatgtaatta GGTGATGgatagaaaaagatttttcatagaCTAAGTTAAAATTCACGCTT GTGACAAGCACCCCCCCCCTACGCAAAAGCGAACGTACACAGATCGACTT GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGCGTAACGG ATTCGTACTCttatatactacctggggttttgtagaggtctgcgattcag actacatgGTGGGGGAATATGCTCCAACCTATAAAGTCGCCCGGGCGTAC GCCCGAGCGCCCTATTTTGCACTTATATACTTTTTACGTCATTGTTTGTT TACGTCACTAACTCCAACCAAATTGGAAACAGCTGATTGGCTACtgaaaa aataatcaatttttaaaaatggcagccaaatcttgttttgaaaagaagCC GGTGTTTTCGCAAAGTTGTTAAATATTGTGACTTTTTggtgtttcaaaga aaattacGAAAGTTTAGCTTCAAATATCTTCGCAATCTTAAGGCTTAAGA CTTTCTtagccttataaaaggttgaacAAAGGTTCGAAGCTGCTTACTAC CGTTATATTTCTAGTGTTTCGTTTTTCTTTGGttccaaaattctcaattt ttgttAACAATGGCTTGTGCTGCTCTCAAGAGACCTCACAACTTTGATCT TCTTGGTAACAGTCCTGATCATAAAGTCAGTGCATCTCCTAAAAGGAGAA GATGTGGAGCTGTAGTTACATCTTGTTCGTCAACAAGTATTTCTCCTTTC CTTGAAGCTACTCCAAAATTATGcaaaggtaatttttttgcattgcttgg aaatttgattgaaagaaaatttatatGAATCATACTGTAATACTATTCTG ATTTAAAACAGTTGAATATCAAGATGATTGAGTTTTCTCTGTTGAAAATA ATTGCTTTGATTTTTATTTGGAGCCATCTTCTTTAATAAGATATGTAATG CGCGAGCAGCAGTAGCAGAGCAGTGCGTGTCCTCTattaggaccctgccg acgcaccggacttaacgaacaccggacacgcaaaAATCCGgtgtaaaaga gaattttttttaccaccggacataAGGAAGTcagatgtccggtgtcggag aaggatattttttcccaccggacaatcaaatgacaccggacttattacgt ccggtgtagcgaaaggatactttcttccaccggacaaatacaccggacag tccggtgcgtcggcagggtcctcctCTATTCTGACGACAGGTTGGGTCAG GCCCAGTTGAtagtttggttcgtgtcctccGGTCAACTCTaagtatttga gaaaaaatggttatcgattcaaagaaaaaatgtaattaGGTGATGgatag aaaaagatttttcatagaCTAAGTTAAAATTCACGCTTGTGACAAGCACC CCCCCCCTACGCAAAAGCGAACGTACACAGATCGACTTgaccccccctcc ccccgttCGTTTTCGTTCGCTTTTTGCTGACCCCTCTCCCCCCTCGGcga cgaacgtactttttgaatggcccctaACCTATACTTTAAAAACCAATATT TTACCCCAGTTTAccatgaagtcgggtaactttcATCattggagggaaac ttgcatagccctccAAATGAATAACCTGGCTGggcattaaaatacaaagt taaatccaaacaaacctgatttacaaaaaaattgcgGGTGGTAAAATGTA TAAATATCTCTAGCCTGgttatccaagctcaaaattttagaaaaaacaaa acttatCCCAGCATAccaagttctaaaattatagataATGATATCATGGT AATGTACGTTAGCATATTATGTGATTACTTAATAGAactagagcttggtc tccctaagaccagacccgatcaatcgaacttgtcgaaccaatcgaacaat cgaactaatagaactccatcgaacgattaaagttcgattaaaaaaattaa tcgaacctaatcgaacactcaaaatttttgaagcaatagcagttcgatta gttcggtcagtaaaaagttcgattagttcgatgatattaaaatcctcata tcttccctctcttgcaaaaactttgtcctNgcaaaaactttgtcctggca cgcgattgccaatttcgacagttcccggacttaacagcttgatgtttatt gtacccggatatttgtctatccggaaaaaaagtctgttgcgatttcgcgc gAGGCCGAATGGCAGAATACTACGCCCGCCCCAACAAACCGCTTcttctg gcgctaaaaggatacaggaaaagtgtgtaatccgttatcggaagtaattt cccgatttacattccgaatttggctttgaaaagaagctaatatacggtgg cggagcagcacaaacttgtcaaacaaaattggtttaacgaactgatcgaa ccgaaacccaatgatcgaacttaatcgaacactcacaatcttttaaaaaa gcttagagttcgattaatttatttaatcgaactttaatcgttcatggagt tcgattagttccattgttcgattggttcgacaagttcgattgatcgggtc tggctaagagaatgaaagtgcaaacccaaaACTTttctagccaacccagg gcaccaaaacagaaattaattaAAAGGAGCCTTTAAAgatctaaagctat tttaaaacatctaaaagattacaccaaagtccatcaACACACGCAAACGT GTCACCATGAcaaaccatgttttcttggaaaataaaCTCGCCCccacttc ttctttttcatgttttcatgtaacagaaagctgtaTGTTCACGATGCcag tcaaaaattgtgtgaagtatcaaaaaatcaacaaaaacacatTTTTCTCA ATATATaactctaaaaatattttcaatatgaATGCAAAACTTTACCAATA CATAGTAAATATATACAACAAGAAATAGGCtaagtaagttttttttgaaa aaagtacgtTTTTGGTGGCTGAAAGTGGAAAAATATACAAGTACCATTAA ACATCAGCCACCACAGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNatgaaaattaaaacaaaaatcctTGAGGGGAAGTGTCAATCTAA ATTGCAGATAAAAAATGTACATTAAAATTTAAGGGTAAATGGTCCATTTT GGCGGctgaaaaaaaggattttttatttcgttctttttatGAAAGTGTCT ATCAGCCACCTAAGGATTGCCTAGCTTCTCTTTGCTCCCCCCTCTCACCA AAAATAAGAGtatagaaagaagaaaattggcTTTGTTTTGTGTCTTGACT TGTGGCACTATGATATGATTCACATGGAAAGTGAATACTCCTTCGCCCAT CGGAGCAAACTCCTTCACCCTGTGGCGAAAATTAAAGGGCTCGAAAATAA AAGGCGCGCAGAAATTAAGGGCATTAAGGTATCTCTTAATCTTAAGTGAT GTCATGCCTAATAATGTTTAATACAGAGCTGCAAATAAGCGTCCGTCATC GGTCAACGGTTTAACCAATCTCTGAAAAGAGGAATAAACTTGGTTGggat ttaaaaataaatctattACACCCCTGTATTTTGCTTACATAGCCTATTCT TTTAACACTTGCTTccttcagttagtcacactagcgtctcGCCGAATTgc ttatcaaagattaatgctgcggaAGCGCTTTATCAATTACTTGGACTCAA TCAAGAAAAATGTgccgcaaaatttctaaagggatttatgaaaaaataaa ccggtactttttaataaaattaacaCTAGATAAAACTATGAAGAATTACC TAAATTTtaagccatagatgaaaaaatttgaaccaagccaaccttaaaaa ctaatttgaagaacgacttcccaagaaaaagatctacggatGAGAAGACA ACCACCTAGATCTGCGCACCGCCAGATAGGCTATTACCTGGAAATTTTGC CAGAGCTCATAtgctgacccatttacatgtgtggAATTATTCTTAATTTA GTGTGTAATCAAGGCCTTACAATCAAGGTTTTATCTCGGGAATTGcataa caaattttggttggtcattattttttgtttcaagCTTTCGATATTTTACT TTAATTGCCTTGGGATCTtcaacttgattcaggtaactctcaccCTTGTT GTTTCAAATACATCATCATCCTGTAGATGGCTGATGTTGTAATTTCTGAA accttgatttcctagtgtgactaactgtcctTCGTAGcttttaaggtatg tgttcacctttcttgacacattctctttaattgatcatatctttagaaca acaaatttttatatatcaaaagtatcttgggattttttttggaattgact ttaactctttaaatcctaaattctgtaaaaatatcgataaaaaagtaaat ttaaatgtgattttttcagttatctgtaaattgaggaaaaacaacttggt tagaaataaaatcctaagacactttttaagtttgatcttttgggaatgtc ataaaaaagaatgaagtcgatatctaaatactatgggtgactttaacttc gttaaaagtagtatggtgtggtaaaatttcatttttttctacaccaattt gaaatttttaacgagatgattgctgtttatttgagtaatcagtgaaattt gtcaaaaatattactattcaatagaggtgagaacaaacatcagctgaatt ctctcttttgtcttttttgttgtttccgaaagagacaattatttgattaa ataatccatcataagacgaactttgttttgaaatttaaatggttaaaact ctggatcaaaaaaagattttaagatcgcgattttaccaaaatgaaatcca gtaaattttcttccactttgactgaaaaaaatttttttgacaaaaaattg gaaaaaaggtgtacacataccttaatagTGTTTCTAAAGTTTACTTTACT TTGTTCTGGGTAATTTTATTGACGGTTGTTTCTAAGattacttttttatt gactGGTTTATTCCGTAgctttcaagagtgtttttaagttaacttttatc aacttgctttcttcgtaactttcaagagtgtttctaaaatcacttttatc aacttgctttcttcgtaactttcaagagtgtttctaggttaacttttatc aactcgctttctccgtaactttcaagactgtctaattttagaaaaatata cactgaatgGCCCAACAGGGGGCCAGTTTGAgcgacaggatttcatttct gtcggacatgatgtctgattgactaaaaatatttatttgcaggcCTGTAA TATCGTTATTAAATTAGAGGTTACACATCCAGCAGCCTAGTTTAGGTATA AACTTATTTCTTTTTttatgatttttgttggcgaaaacgTTTAGAACATC CCACCGTTCTGCTCGCTATAATATAGCGAGTTGAACCTGATTGGTCGAAA AAAGCTGTCAAATATTTGTAATAATTATCGGAGCAGCGAACTCACTCACT AAACAATTATGCGCAATTATCTCATTTAGCCGCGGCTTTTTTATCTTAGT AAGAGTAACCACggtaaaacatatcaaaatcaaaacattcaaatcaaATC TTTTACTCAATAAGTAGACCTTTCTCAAAGCTATTCACAATTGACTGTGT TATTTAAAGCTTTTGCAATCCTTGTTGCAattcttttcattcaaatttcc tCGTAATGATCTTAAAaacttaagagccattttttttaaaaatcttcaga ataaagaaagtgtgatacctcaccctctcagattttgatgaaattttgac caaatgatccatcacacaagaaaataagaccatgaaaatttcaccttgat atctcaagtagttttgaagatacaNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNttttcttgtgtgatggatcatttggtcaaaat ttcatcaaaatccaagaggatgaggtatcacaccctgaagactcttaaaa aaaatggctcttaaataTCCACTAAAATGCTCCATATAAAAATCATAAGT TATGTTTCGACCGATGAGTCCACCGCACGGGTATTGATGAAACGGCCCCA TGTAAGTCGATATGCATCATTTTTATAACCTAGCTTAATTTGGTAGAAAA GCTTGATCAATTCATGAGAGTAATTGGTATGACCAGTTGCTTTGAAATAA AGAACTATGATATCATTAATATTTCGCAAAATCACGTTGATTGAGAACAA AACCACCTTTCAAGCTCTCTTCTTTGATCATTGCAAACCTTTCAGTTTGT GATTCAGTTTAGTTGGTATAAAAGGTCTGCCAGACGCTTCACCGGAGAGT CTTTAAATTGTGAGCTccctttattttttaaaaggaTACTGTAGAAAGAG AACGGAGAGTGTATTCTCCTCTCGCTGAGCTAATAGTTTGTTTGCTCTTT CCATTGTTGGCCAATTACCTTACGAATGCTTTATGTAAATCTAATAGCGA GAGATTGATCTCTCGCGTTCTCtttctcttcaaaaacatgtaaaaaaccT AACAAATCGACACCCTGGACACTCACACTGCTACTCTGGATTCTAAGAGA ttctacgttctgtaaaatgcaaagaaaaataaaaacataacagtAAAGAT TGCGGCCAAAGTAGCGGTATAAACTTTCAGATTAAAAGCATTGCTGTAGG GCTGTATTTTTAGGAAGAAAACAgctctaaaacgcttaaaattgagcttt tttatcGCGGTTTTTTGTCgaaccgccatctttgtttatgcAAAAGGCGC CATTTTTAAAGCGACATTTTACGAATAATTAATACGGTTAATAAACAATA GAGAAGTTTCTGATTCGCCAATTCGCTTTCTTGCAATTTTTGACTAAGTC TGGGATGTTCTAAAcgttttcgccaacaaaaatcataaaaaaagaaataa gtttatacctaaactaccAGCAGCCATCAAGAAACGTCCAAATTCTCGCC ATCTTGAAATTTATGATCTCACATGAATTTTTACTATCCAACCACGCTCT TTTATTCACCTGCAATTCTGTCGGCGAGTAACTCGTAGAgtaaatggtag agtagagcagCAAGTAGAAATGCCTAGTTCATTCAGGGGGGACAacagag gcagggtactaacccatagggtactaacttgattttttactgaaattttg tttagtaccacccacgtatatttagtaccgggtactacttcattttagtc tacacaatagacagatccaggcttttaggccttactcttggtctataggc actgttATAGgtggccactagtgacccccaccgggaattgtttattaata ggtttaaacataatagacaacattcacaaaagatgtttatcaatagagat tttNNNNNNNNNaatcttaaattttacagattagaccaaGAGAGGGGTAC TATTGTTAGTTTTTCAGACTGAAAATTGACAGATAATTCAAGCAAACTAT CAAACCAgattttgtcctttgatttgcacacttcttgaccattttgagaa aaaaaattagtcgattaaaaaaatttcaaatcaaaaaaattagaatttga aaaaagtcgaAACATTGcaacaaactactttttttattgaaaaacagcaa aattctgtgaaaaagtacccaaatagtatCCTTTACTTGCTTGAAGAGTG AAAAGTACACACACCCCCACCCCCaaagtagtaccgggtactaacttttt tgaaatgcaaaaatagacaccaccacctggcTATGGGTCAGTACCCTGCC TCTGTACTCCCCCCTAGTtcatttgctttgaaattttgctactttgaatg gtcaggcatttgatggctatNCCTCTGTACTCCCCCCCTAGTtcatttgc tttgaaattttgctactttgaatggtcaggcatttgatggctatgcaagt ttccctccactgattcaagttaccctccactgattcaagttacccaactt catgGTATAAGCAGAGAGTCACAGATGTATTCCTTATAAGAACACACGGC GAATGCATTAGTCTGCAGTTATAGAAGTGTCTTTGTGATTGCGGCACTTG CCTTTGTTGATTTGGTCTTCAGGCTATATCTTAACATTCCCGGTTGGATT CCAGGATTGTGTGATTGCTTGAAGAATGTAGGACTTctaaaattgaggtt tttggtgggaaaaataaaaaaaggtttcaatttCACTGACCCATTAACAA TCAATTAGACCTGTCCTTGGTTTTCCCcctctaaaaaattgaaaaaacct gtttcaattttcttaagaagGTTCAAAAATCCAATGATAGTATTAACCTC CAACTGTTCTAACTTTTAATACAAATTACAccaatatcaaaacatatcag agggggtGTGTGCAGCCTAGGGTACTATGGACTGCTTTTTGAGATACTTG GACCACGTTGTcataaaaatcacaaaagattGCTTGTTTcaagctccaac cctgaccctaactggtaATAACCACACCTAAACTCAACCCTACTAGGTTG CCTGCTGGTCCTGCCACAATCCCTGCATATCCCATTGAGAAGAATCCATC ACTGTCAAGGGGGGTTCgggttattaaaaaaaacacactaaattggatgt tttatgtaatttttacaatatttttttactttttagcacgaaATTGGTTC AATGTGTAGAACCTCTTTTTTCATCAACTCAGAACCgtcaccctttttag tacattgtactaactcaaatttagcttgaaaaaaaacaacactcCTTCAC CTTTGATTAGTACCCCCTGTTTGCTTTGTGCCTGTCTTAAAGTGTTTGTT CCATTTATGTGAAGTGTATGGtcgtaaaaagattttttcagttttttgca gaaaaaatcattaatttttgaagccttgtagGGGTCAGTGGATTCTTCTT CAGTTTCCAAGGGGGAACCAACCTGCTAGGGCACAATCACGATGATACAC TATATGATCGCGAATATAGTCACTCGAAGGTAATATTGTGTCTAGTGTTT AGAAATTTCAATTAGTCAGCATTTTAAAAGCACAATATTCAGATGTTTCT AAAAGCGTAGTAACTAAAAGGTGAAACGTCAGAGAAACGAgtggaaacgg gtggaaacgatacagaaacgggtggaaacgacacGAAAACGGGTGGAAGC GATACGGAAATGGGTGGAAAAGATActgaaacgggtggaaacgacacGAA AACGGGTGGAAGCGATacggaaacgggtggaaacgatacGGAAACGATat ggaaacgggtggaaaccaGTGGAAACGATACGGAAATTtatgtaacgcta gcccagcatTAAGATACATCTCCGTCTATCACAGGCTTCGCATAACCGTA AGAGTATACGGATATAGGTAATCTATGAaaaagtcgttgcagtgcaaatc tttctcaaatttaaaaacccactttcccgtggaaataattgacgtttttt gtttttttgggacccttggggcataagctacccgttgaccacaaaaattc caaaattcttgaattgaccgttgacaacattagaaCGGGACCCAGTGACG TCACAAGTTTGGGAAAAACGATAtcgaaatgcgatatctcgagttcaAAA GGAGTTGAGAGGTCGTTGACCCTTCATTAGATCGAGAATTTTAATGGAAA ATAAGTTAGGAggggtaagagtgggtatatatagacttttgaaattaaat atattcaaattgaggcatattaggtccgatgacgtcatcaaaaactgaaa aatacaatatctagagtttgagaaggatttaagcaatgattgacccctca ttggaaagtgaaaagtttattacacATTGAGATGACATCATTTAGAGCCC AAATGACgtaacaaaacataaaatttgtcATATCTTTAGTTTTAAACCAT TTTAAGTGGTAATTTTTCGTTCTTTGGGATTAATTCACTCTATAGTTTCC CCTTTACTATCaaaagggcttatgatgcgttcagcttatgcgagtttata aaaaaattctcaaatttttccaaggggttgATTCGAGTATGAAAGAGGGA AGTGCAGTTTTAAAACAAGAAATCttattgtttttcgaaaatgcAGTTAT TATTTGGTCTTCTAAGGCGCTTCATGTCGACCTCAAATTCGTAAATACAG CaagcaacatttttttatatattttccatTCTTACACACTGATGACGctc tcaatttgacgttttactgCTCAAGTCAATAAGTTCCCGTTGTcgattaa aattaaattgaaatagCTTTCAAACTTACTGAAGAAACTCTCACAATTAa agatttattatttactaagcttttatttactatttattttttacttctGG TTCTTATTCCATTTGAagcataaaaagatatttacgaTATAATATGTACT CCCGTGGTTGATGAAAACTTATTCGAATTCtccttaaaaataaagtttga gagcatcaacaataccatgtttatcatcctaagggctttgctaaaccggc gtttgcgacgaagGGAACCGACTAATGATACAACAGAAGCTTTGTTCACT GTTGGTCCTTTACCCGTTTCCAATCGTTTCTCCCCGTTTCCATGTCGTTT CCACCAGTTTCCCTGTCGTTTCCAGGGCGATTCCCCACGTTGTTCTAAAA GCGCTATCAGTTTATTAATTACACTTACACAATCTTTTTTCTAGATGAGT TGGCCAAAAATGTACAAGATGAATGGAGAAGGATACAACGCCGTAGGAGA TTGGCTTGtccctcatcacctcaaaacAATACATCCAACCTTCAGAGTCT TTTTGGATCCCCAACTTCCTTCAACACAGGATATTGGTCACCTCCTAGAG GTTCAATGTCACCATGTAGTAGTTCCATGTCTCCCCCCAGAACCACCACT GAGCGTTCAGAACAGACCAGTTTGAATGTCAAACAAGTCGTTTCGCTCTG TGAAAGATTGTGGAAAGAACGCGAGGATAAACTTCGTGAAGAATATGACA AAGTTCTCAATGATAGACTGTCAGGTAAATATTTTTACACATGGGCAgct ttatttttaaaagaaaaagtcacAGCTAATTAAGACGTAGTAGTTGTACA GTTGACTTTCTCTGGTTCAATCTTTAAGTGGCcaagaattttatttaaat tatctatttcataccttaaaacaagtttttttgcttatttaataacgcag gaatttaatttggcaggtgaccaaaaaagttttttcagagggaatttaat ttggcggatagctggataaattaaatttgacaggaatttaatttggcggt tgcaggatatttttggcaaaaagcgttattaaataagcaaaaaaacttgt tttaagGTATGAAATAGCACGAATTCGGGGAATGCGtgaaatgaatttaa tttggcaggaacttaatttggcgccaaattttctttccgccaaaatttct tcctttatggTATAGAGAGATTGGAATTGTACTgtatttaaatttcaaat aataGAACTTTGAATTATAAAGCGTTGACTTCCACTGATTCTTGGCCTGT TACTTTTCTCCCCATTGTTATTCAGCTTTATTTGTTGTTTTcctgtaaaa ttttatttatacaaGATTATTCCAATTTACAGAACAGTACGACTCCTTTT TGAAGTTCACTCAAGATCAAATAATGaggaaatatcaaaattcatcATGT AGTTGTAAGTATACCTTTAAATTTGTTCTCAGAATAAAAGGTTCtttatt cttcaaaatttttgacttttctgtCTCGAAGGCTTATTTTTCATCAAGGC TAGGCTAGTTTGGCGAAAGAGACCACATTTTTCTGGGGTAAATACATCTG AATGCATTtatctttgtttaaaaaagatGCCGTGAGGgtttttgactttg ttttttccctatttctgtacattaaatttctttttctatttcagACGTTT CGTAACGTGCTTTGTCATCTGGACGAATGAATTGTAAATATGTCATTTAA AAATTTGTATTTCCCTCATTATTATTAGTTTGAATAAGACATTGTTTCAA AGAACCTTATTAATTTTGGTATTTAGTACTTTAGAAAGCACTTTCATGTC TCAGAAAAGATCTGAAAGGAActaaatttgagatttttgctcAGAATGAG GTGATGAGactgtaaaaaaactttcttgacatttttcaaatttgaagcCA TTACTTAATGTCAAAATGGTGCTAGgaatttattttgattgttcaTAGCA ATTTTACTAcagtattttatttttgttccaattATTTCTATTATATTCAG TTGCTGTGGGAGATTGAGCCTCTCTCCAAGCAAATTGGAGTTCCAGATGG AATTATTGACTTTCTGTATCATTTAGTTCCACTAATTTGTATCATAGTTT ATGTTAggagattttatttttgttccatttttcttcttttacttAAAAGC ATATAGGTTAAATTTTGAACCACTTTTGATATGGTGAATTTTacttcaag aattttggaatgTATTCTTTTCTGGGACAATTTCATTATATGTATACTTT CTATAAACTGCCTAACTAAAGACTCTTAAGGTTTTTTCGAAAAGATATTG AAGAAAAGAATTGCATCTTTCTGTTGCTATTACCATAGTCGAAGCTTCCA AATTAGCAGTCTTCGAGACGGAATGATTTCTTACTCAATTgtagtatata tttttgaatgcttgataaattttagatttttagtgAGTTTAGTATATCCA TcagttttattattatttcaatTACTATTACTGGAAATATGGCGTTCTAC TGAATTTTAATATTGTATTATATTATTTGTTcacaaaataaacttttttt gagtATAAAAAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038051XLOC_038051Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060488-exon-scaffold_343-1491911889:90522..90961TCONS_00060488-exon-scaffold_343-1491911889:90522..90961Clytia hemisphaericaexon
TCONS_00060488-exon-scaffold_343-1510915933:90522..90961TCONS_00060488-exon-scaffold_343-1510915933:90522..90961Clytia hemisphaericaexon
TCONS_00060488-exon-scaffold_343-1575043694:90522..90961TCONS_00060488-exon-scaffold_343-1575043694:90522..90961Clytia hemisphaericaexon
TCONS_00060488-exon-scaffold_343-1491911889:105866..106195TCONS_00060488-exon-scaffold_343-1491911889:105866..106195Clytia hemisphaericaexon
TCONS_00060488-exon-scaffold_343-1510915933:105866..106195TCONS_00060488-exon-scaffold_343-1510915933:105866..106195Clytia hemisphaericaexon
TCONS_00060488-exon-scaffold_343-1575043694:105866..106195TCONS_00060488-exon-scaffold_343-1575043694:105866..106195Clytia hemisphaericaexon
TCONS_00060488-exon-scaffold_343-1491911889:106804..106875TCONS_00060488-exon-scaffold_343-1491911889:106804..106875Clytia hemisphaericaexon
TCONS_00060488-exon-scaffold_343-1510915933:106804..106875TCONS_00060488-exon-scaffold_343-1510915933:106804..106875Clytia hemisphaericaexon
TCONS_00060488-exon-scaffold_343-1575043694:106804..106875TCONS_00060488-exon-scaffold_343-1575043694:106804..106875Clytia hemisphaericaexon
TCONS_00060488-exon-scaffold_343-1491911889:107116..108035TCONS_00060488-exon-scaffold_343-1491911889:107116..108035Clytia hemisphaericaexon
TCONS_00060488-exon-scaffold_343-1510915933:107116..108035TCONS_00060488-exon-scaffold_343-1510915933:107116..108035Clytia hemisphaericaexon
TCONS_00060488-exon-scaffold_343-1575043694:107116..108035TCONS_00060488-exon-scaffold_343-1575043694:107116..108035Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_343supercontigscaffold_343:90522..108035 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.19588 7.62655 99.4734 151.501 28.4287 14.246 17.1842 28.4677 7.74286 9.00386 0.00131455 1.96966 3.76651 2.04129 4.26188 4.07317 2.21967 6.40229 0.000374362 8.40993e-05 30.8388 27.8576 21.8106 22.798 8.28063 32.0245 26.0842 20.2908 9.84593 23.2562
Blast
BLAST of TCONS_00060488 vs. Swiss-Prot (Human)
Match: AKIR1 (Akirin-1 OS=Homo sapiens GN=AKIRIN1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.654e-18
Identity = 36/65 (55.38%), Postives = 51/65 (78.46%), Query Frame = 2
Query:  656 EQTSLNVKQVVSLCERLWKEREDKLREEYDKVLNDRLSEQYDSFLKFTQDQIMRKYQNSSCSYVS 850
            +Q +  ++QV  +CERL K+ EDK+REEY+++LN +L+EQY+SF+KFT DQIMR+Y     SYVS
Sbjct:  128 DQPTFTLRQVGIICERLLKDYEDKIREEYEQILNTKLAEQYESFVKFTHDQIMRRYGTRPTSYVS 192          
The following BLAST results are available for this feature:
BLAST of TCONS_00060488 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AKIR12.654e-1855.38Akirin-1 OS=Homo sapiens GN=AKIRIN1 PE=1 SV=1[more]
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