TCONS_00060483 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060483
Unique NameTCONS_00060483
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length366

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060483 ID=TCONS_00060483|Name=TCONS_00060483|organism=Clytia hemisphaerica|type=transcript|length=366bp
GTTCTGTTCTAGGCcctcttttatttttaatttacattAATGATCTATGT
AATGCAATTGAACATTCCCTAACCTCCCTTTTTGCAGATGACACGAGTCT
AATCTACTCAGAAAAATCTCTTATTAACATTGAAGAAAGTATCAATGCAG
ATCTCCAAAATCTTTATATATGGCTTTGTGCATACAAAATCTCTTTGAAT
GTagctaaaactaaaattttacttttcaggAATGTACACAAACAAATCAA
ACATAATCTTCAGCTTTCGATTAATAATATTCCCCTAAACTTAAGCGAAT
CAATCAAATACCTTGGAGTAACTCttgatcactttttaaattggaGAATA
AACACAAACAATCTAT
Run BLAST on NCBI

protein sequence of TCONS_00060483-protein

>TCONS_00060483-protein ID=TCONS_00060483-protein|Name=TCONS_00060483-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
SVLGPLLFLIYINDLCNAIEHSLTSLFADDTSLIYSEKSLINIEESINAD
LQNLYIWLCAYKISLNVAKTKILLFRNVHKQIKHNLQLSINNIPLNLSES
IKYLGVTLDHFLNWRINTNNL
Run BLAST on NCBI

transcript from alignment at scaffold_342:87289..87654

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060483 ID=TCONS_00060483|Name=TCONS_00060483|organism=Clytia hemisphaerica|type=transcript|length=366bp|location=Sequence derived from alignment at scaffold_342:87289..87654 (Clytia hemisphaerica)
ATAGATTGTTTGTGTTTATTCtccaatttaaaaagtgatcaaGAGTTACT
CCAAGGTATTTGATTGATTCGCTTAAGTTTAGGGGAATATTATTAATCGA
AAGCTGAAGATTATGTTTGATTTGTTTGTGTACATTcctgaaaagtaaaa
ttttagttttagctACATTCAAAGAGATTTTGTATGCACAAAGCCATATA
TAAAGATTTTGGAGATCTGCATTGATACTTTCTTCAATGTTAATAAGAGA
TTTTTCTGAGTAGATTAGACTCGTGTCATCTGCAAAAAGGGAGGTTAGGG
AATGTTCAATTGCATTACATAGATCATTaatgtaaattaaaaataaaaga
ggGCCTAGAACAGAAC

Coding sequence (CDS) from alignment at scaffold_342:87289..87654

>TCONS_00060483 ID=TCONS_00060483|Name=TCONS_00060483|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_342:87289..87654 (Clytia hemisphaerica)
TAGATTGTTTGTGTTTATTCtccaatttaaaaagtgatcaaGAGTTACTC
CAAGGTATTTGATTGATTCGCTTAAGTTTAGGGGAATATTATTAATCGAA
AGCTGAAGATTATGTTTGATTTGTTTGTGTACATTcctgaaaagtaaaat
tttagttttagctACATTCAAAGAGATTTTGTATGCACAAAGCCATATAT
AAAGATTTTGGAGATCTGCATTGATACTTTCTTCAATGTTAATAAGAGAT
TTTTCTGAGTAGATTAGACTCGTGTCATCTGCAAAAAGGGAGGTTAGGGA
ATGTTCAATTGCATTACATAGATCATTaatgtaaattaaaaataaaagag
gGCCTAGAACAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038046XLOC_038046Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060483-proteinTCONS_00060483-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060483-exon-scaffold_342-1491911889:87289..87654TCONS_00060483-exon-scaffold_342-1491911889:87289..87654Clytia hemisphaericaexon
TCONS_00060483-exon-scaffold_342-1510915933:87289..87654TCONS_00060483-exon-scaffold_342-1510915933:87289..87654Clytia hemisphaericaexon
TCONS_00060483-exon-scaffold_342-1575043694:87289..87654TCONS_00060483-exon-scaffold_342-1575043694:87289..87654Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_342supercontigscaffold_342:87289..87654 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.438685	0.856535	1.17249	1.13335	0.304737	0.818768	0.369694	0.991789	0.571269	0	0	0.45149	0	0.156075	0.162093	0.137701	0.92121	0.521617	0	0	0.450463	0.723757	0.518192	0.471112	0.242617	0	0	0.330684	1.11426	0.927967
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060483 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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