TCONS_00060482 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060482
Unique NameTCONS_00060482
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length466

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060482 ID=TCONS_00060482|Name=TCONS_00060482|organism=Clytia hemisphaerica|type=transcript|length=466bp
TTTTTTTCGCATCTTAATTATGCTTGCCAAATCTGGGGTCAAAAACATAA
CTATAATGTGGAAAGAGTCTTTAAACTTCAAAAACAATGCTTACGAATCA
TGactttttctgatttcaatGCTCACTctagtaaatttttttatgaactt
aatCTTCTTAAAAATTTCTGATCACATTAATCTACTTAATATAACTCTTG
CTCACAGGATCTTATGTGGCTTTTCTCCAATTAGACTCAAGAATCTCTTC
TCTCTAAACTTTTatcaacataaacaaagaacCAGAGGGAAATTAGTGCG
CCTTCTTTTCAGGCCCTCTTTCAGAACTTTTATGTATGGTGCAGAATCTA
TCACCTATAGTACCATTGTCCAGTGGAATGATTTACAACAGAATTTTCCT
GCTTATCCCTTGACTGACTTAACTGGTTGTGAACTAAGGATAAACTTACA
CAATTATCTTGTATCT
Run BLAST on NCBI

transcript from alignment at scaffold_342:86746..87211

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060482 ID=TCONS_00060482|Name=TCONS_00060482|organism=Clytia hemisphaerica|type=transcript|length=466bp|location=Sequence derived from alignment at scaffold_342:86746..87211 (Clytia hemisphaerica)
AGATACAAGATAATTGTGTAAGTTTATCCTTAGTTCACAACCAGTTAAGT
CAGTCAAGGGATAAGCAGGAAAATTCTGTTGTAAATCATTCCACTGGACA
ATGGTACTATAGGTGATAGATTCTGCACCATACATAAAAGTTCTGAAAGA
GGGCCTGAAAAGAAGGCGCACTAATTTCCCTCTGgttctttgtttatgtt
gatAAAAGTTTAGAGAGAAGAGATTCTTGAGTCTAATTGGAGAAAAGCCA
CATAAGATCCTGTGAGCAAGAGTTATATTAAGTAGATTAATGTGATCAGA
AATTTTTAAGAAGattaagttcataaaaaaatttactagAGTGAGCattg
aaatcagaaaaagtCATGATTCGTAAGCATTGTTTTTGAAGTTTAAAGAC
TCTTTCCACATTATAGTTATGTTTTTGACCCCAGATTTGGCAAGCATAAT
TAAGATGCGAAAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038045XLOC_038045Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060482-exon-scaffold_342-1491911889:86746..87211TCONS_00060482-exon-scaffold_342-1491911889:86746..87211Clytia hemisphaericaexon
TCONS_00060482-exon-scaffold_342-1510915933:86746..87211TCONS_00060482-exon-scaffold_342-1510915933:86746..87211Clytia hemisphaericaexon
TCONS_00060482-exon-scaffold_342-1575043694:86746..87211TCONS_00060482-exon-scaffold_342-1575043694:86746..87211Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_342supercontigscaffold_342:86746..87211 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.786002	0.673081	0.592782	2.6182	1.147	0.73554	0.770005	0.664617	0.116328	0.576366	0.139859	0.415917	0.459049	0.572073	0.862256	0.252363	1.32369	0.106218	0.880474	1.22847	0.666356	1.0996	1.35174	0.461304	0	0.925939	2.48482	2.12271	1.50803	1.51159
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060482 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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