TCONS_00060481 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060481
Unique NameTCONS_00060481
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length624

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060481 ID=TCONS_00060481|Name=TCONS_00060481|organism=Clytia hemisphaerica|type=transcript|length=624bp
NNCTCTTCTTGAAAAGAGGAATTGTTTGAGTGACTGGTTGTTCACTTTTG
CCTGTTTTGTGAGGGATTTTATTGTCTCctctccaaaaagttttccatCA
CTTTCTTGTAACTCCTCTAATAGGGTCTCTCTGAGCCACACACTGATATG
GCTTTCACGAATGCCAAGTCCCATCAAAGCATTTTTCCTTCGGAAGAAAT
TGCTGGTATTGAGGGCCTGTCCTAACAGCAGTATCGACTGTTGGAAATGA
GTGGCCACCTCTTCGAGATCGAGTTTTTCATTCTCGTCTCCTAATCTTGC
TCTCTCAACGCTCTGCCAGATTTTGGCAAGCGGAGCCAAGATATCTCTGA
CTTTATTCGATATCCGGGATATCGATTTGTCCACGGCCAGGGTTTTAGTT
CCCATTGACCCTTTTCTCTGAGTAAGCAATCGAATAATGAATCCATTTAT
AACTCAGGTGAGACGTTGCTTGGGACTGGTGTTTCTTCCAGTATGTCCCT
CTCAAGCTCTTTATCAGGTATGTAATTCCTGATGTGCTTCTCCAGATACT
TCACAAGTCTGGGATCAAGTTTCCAGTCATGTTCATTGACGTCCATCTGG
AATAATTCTGGTTTGTCGTCACTC
Run BLAST on NCBI

protein sequence of TCONS_00060481-protein

>TCONS_00060481-protein ID=TCONS_00060481-protein|Name=TCONS_00060481-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MGTKTLAVDKSISRISNKVRDILAPLAKIWQSVERARLGDENEKLDLEEV
ATHFQQSILLLGQALNTSNFFRRKNALMGLGIRESHISVWLRETLLEELQ
ESDGKLFGEETIKSLTKQAKVNNQSLKQFLFSRRX
Run BLAST on NCBI

transcript from alignment at scaffold_342:68127..68750

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060481 ID=TCONS_00060481|Name=TCONS_00060481|organism=Clytia hemisphaerica|type=transcript|length=624bp|location=Sequence derived from alignment at scaffold_342:68127..68750 (Clytia hemisphaerica)
GAGTGACGACAAACCAGAATTATTCCAGATGGACGTCAATGAACATGACT
GGAAACTTGATCCCAGACTTGTGAAGTATCTGGAGAAGCACATCAGGAAT
TACATACCTGATAAAGAGCTTGAGAGGGACATACTGGAAGAAACACCAGT
CCCAAGCAACGTCTCACCTGAGTTATAAATGGATTCATTATTCGATTGCT
TACTCAGAGAAAAGGGTCAATGGGAACTAAAACCCTGGCCGTGGACAAAT
CGATATCCCGGATATCGAATAAAGTCAGAGATATCTTGGCTCCGCTTGCC
AAAATCTGGCAGAGCGTTGAGAGAGCAAGATTAGGAGACGAGAATGAAAA
ACTCGATCTCGAAGAGGTGGCCACTCATTTCCAACAGTCGATACTGCTGT
TAGGACAGGCCCTCAATACCAGCAATTTCTTCCGAAGGAAAAATGCTTTG
ATGGGACTTGGCATTCGTGAAAGCCATATCAGTGTGTGGCTCAGAGAGAC
CCTATTAGAGGAGTTACAAGAAAGTGatggaaaactttttggagagGAGA
CAATAAAATCCCTCACAAAACAGGCAAAAGTGAACAACCAGTCACTCAAA
CAATTCCTCTTTTCAAGAAGAGNN

Coding sequence (CDS) from alignment at scaffold_342:68127..68750

>TCONS_00060481 ID=TCONS_00060481|Name=TCONS_00060481|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at scaffold_342:68127..68750 (Clytia hemisphaerica)
ATGGGAACTAAAACCCTGGCCGTGGACAAATCGATATCCCGGATATCGAA
TAAAGTCAGAGATATCTTGGCTCCGCTTGCCAAAATCTGGCAGAGCGTTG
AGAGAGCAAGATTAGGAGACGAGAATGAAAAACTCGATCTCGAAGAGGTG
GCCACTCATTTCCAACAGTCGATACTGCTGTTAGGACAGGCCCTCAATAC
CAGCAATTTCTTCCGAAGGAAAAATGCTTTGATGGGACTTGGCATTCGTG
AAAGCCATATCAGTGTGTGGCTCAGAGAGACCCTATTAGAGGAGTTACAA
GAAAGTGatggaaaactttttggagagGAGACAATAAAATCCCTCACAAA
ACAGGCAAAAGTGAACAACCAGTCACTCAAACAATTCCTCTTTTCAAGAA
GAGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038044XLOC_038044Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060481-exon-scaffold_342-1491911889:68127..68750TCONS_00060481-exon-scaffold_342-1491911889:68127..68750Clytia hemisphaericaexon
TCONS_00060481-exon-scaffold_342-1510915933:68127..68750TCONS_00060481-exon-scaffold_342-1510915933:68127..68750Clytia hemisphaericaexon
TCONS_00060481-exon-scaffold_342-1575043694:68127..68750TCONS_00060481-exon-scaffold_342-1575043694:68127..68750Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060481-proteinTCONS_00060481-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_342supercontigscaffold_342:68127..68750 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.04602	4.10215	2.73514	0.326588	21.2758	12.0832	9.46663	10.6023	4.31187	5.34437	2.24609	3.09515	0.976809	1.96109	26.3908	32.9868	29.8686	17.2952	5.57509	6.4029	16.5185	15.0517	7.27478	4.45289	2.33915	1.41692	13.7582	8.09651	13.7271	5.82607
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060481 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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