TCONS_00060480 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060480
Unique NameTCONS_00060480
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length291

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060480 ID=TCONS_00060480|Name=TCONS_00060480|organism=Clytia hemisphaerica|type=transcript|length=291bp
tttggaaaattcctcAAGCGttgagaatgaaaaatgatgagtTGTAGTTT
GTCACTATTAAATAGTAGGTTACTGTCTTTTGACCACGACTGAAGGTTCT
CAAAATCCTTCTCCATATCCTTGATGGTTTCCTGCAAGTCCTTGAGTTTA
CAGTGACGGTAAAGGGTTGTATCGTCAGAGTATTGAATACTGGATGATGT
TACTTGATCTGAAAGCTCGACGACATAAAGGTTGAATAACACAGGGCCTA
ATATACTACCCTGTGGAACTCCAAAATACATAGGTTTTAAT
Run BLAST on NCBI

transcript from alignment at scaffold_342:62631..62921

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060480 ID=TCONS_00060480|Name=TCONS_00060480|organism=Clytia hemisphaerica|type=transcript|length=291bp|location=Sequence derived from alignment at scaffold_342:62631..62921 (Clytia hemisphaerica)
ATTAAAACCTATGTATTTTGGAGTTCCACAGGGTAGTATATTAGGCCCTG
TGTTATTCAACCTTTATGTCGTCGAGCTTTCAGATCAAGTAACATCATCC
AGTATTCAATACTCTGACGATACAACCCTTTACCGTCACTGTAAACTCAA
GGACTTGCAGGAAACCATCAAGGATATGGAGAAGGATTTTGAGAACCTTC
AGTCGTGGTCAAAAGACAGTAACCTACTATTTAATAGTGACAAACTACAa
ctcatcatttttcattctcaaCGCTTgaggaattttccaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038043XLOC_038043Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060480-exon-scaffold_342-1491911889:62631..62921TCONS_00060480-exon-scaffold_342-1491911889:62631..62921Clytia hemisphaericaexon
TCONS_00060480-exon-scaffold_342-1510915933:62631..62921TCONS_00060480-exon-scaffold_342-1510915933:62631..62921Clytia hemisphaericaexon
TCONS_00060480-exon-scaffold_342-1575043694:62631..62921TCONS_00060480-exon-scaffold_342-1575043694:62631..62921Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_342supercontigscaffold_342:62631..62921 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.840741	1.36032	2.34849	2.90668	0.918758	1.66266	2.07542	3.05703	0.593501	0	2.17634	1.52133	2.80493	1.23911	0	0.812196	0	0.458247	0.479523	3.28059	0	0.97371	0.308954	0	0	0.686213	0	7.72462e-06	1.46244
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060480 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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