TCONS_00060471 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060471
Unique NameTCONS_00060471
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length567

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060471 ID=TCONS_00060471|Name=TCONS_00060471|organism=Clytia hemisphaerica|type=transcript|length=567bp
ACTCATTTGGACCGTGGTTTGTACCGTGGTAGCTTTATTGCATCAAAAAG
TGTACATAACCAAAGGATCGAAAGACTCTGGGTAGATGTTTACATTGGTG
TAACTCAAATTTatcaaactttgttttttaGATTGGAAATGCTGGTTATC
TACATTTGAGTGATCCTGTACATTTATTTTGCCTTTATCTGGTCTTCTTA
CCACGAATCAACAACCATCTGCATAGTTTTAAGACCAGTTGGAATGTCCA
TCCTTTAAGTTCCAATCAAAGTATGACTCCTGATCAGGGCTTTTTAATAT
TGCTGGTTCTGGAAGTACAATTGATAGAGAATTATGGGATCCCTCAAATG
ATGGAGAAGCACAATTTTACGGCATAGACTGGGATGGACCTGCAGTTAAC
GTAGAGGAATCAGACGAATTCAAGAAAGTAACCGTGCCAAGCATTTCCAA
TCCATTTACAGAAGAGCCAATGTTatatattttgaacaattttgatcTCC
AAGCGGGAAGTCGATACTTTGGTGCCGATATCTACAAGAACTTGATAGAT
TTTGTAAGAGACGTAAA
Run BLAST on NCBI

transcript from alignment at scaffold_342:53446..55254-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060471 ID=TCONS_00060471|Name=TCONS_00060471|organism=Clytia hemisphaerica|type=transcript|length=1809bp|location=Sequence derived from alignment at scaffold_342:53446..55254- (Clytia hemisphaerica)
ACTCATTTGGACCGTGGTTTGTACCGTGGTAGCTTTATTGCATCAAAAAG
TGTACATAACCAAAGGATCGAAAGACTCTGGGTAGATGTTTACATTGGTG
TAACTCAAATTTATCAAACTTTGTTTTTTAGATTGGAAATGCTGGTTATC
TACATTTGAGTGATCCTGTACATTTATTTTGCCTTTATCTGGTCTTCTTA
CCACGAATCAACAACCATCTGCATAGTTTTAAGACCAGTTGGAATGTCCA
TCCTTTAAGTTCCAATCAAAGTATGACTCCTGATCAGGGCTTTTTAATAT
TGCTGGTTCTGGAAGTACAATTGATAGAGAATTATGGGATCCCTCAAATG
ATGTAAGATATTTTTTTTCAGCCAAGATAGAATGGTCAGTCTCTGCCCGT
TAAAACTGAAAAGCGAAAAAACAAAGCATGTAGTGTTTTTCCAGGCAGAC
CATGGCTATGCGACTGACTAGAATGCATACCCAAATCCGCTATTTTGCAA
ATAAGCTATTTCGTATTGTCTGGAAAATTACGAGGTATTTTTACATTGTA
CATACTTATACATTCAACATACTATTCGCACTTAGATTCGCGAAATCCTA
AGATTTTGTGGGGACAAGATTTTATACCATCGGACTGAGCCAATCAATTA
CACGTAATTGCATGACATTTTTTATACGAAATAGTAGTAGTAAATTCTTG
TATCGTTAAGGAAACCCAGTGTCACGATATTAAGCAACTCTTTCTAAATC
ACGTTCTAAATTTAGCATGCCATGGTCACATGTAATTTTCGGAAATATTT
CGAATACTTCATCTACGACTCGTCCCATATAAAACGTTTAGCTTTTTACT
ATATCATTTTCTTTTGAAAATAGTACGAGACTTCAGTGCATGACACAAAC
AACATGAGAATAATGTATATTAATTATTCTCAAACACGAAAGGTCATTCT
ACTTACACAGTTTCCTCATAGTGTCTCATTCTCTCCTTTCCAGGAAAAAA
ATAATATCCTCCCTTCACCCCCCCCCCAAGAAATTCCAAAATNTTTCAGC
CAAGATAGAATGGCCAGTCTCTGCCCGTTAAAACTAAGTCCATAGAAAGT
CCAAAATTCCCAACCAAAAAGGAGGATGATACTATGACTAATCGCACGAT
GAGTTATTTTTTCTTATTTGGCGCGCCTTCAAAGAGAGCAGTTATTCGTT
AATCACACTCTCGAAAGGGCGCCAAATTTCTTGAAAAATTGTTCCTTCAA
AATTGAGTTTTAATATCTTTCACATCGTTCTTTCATCGAACGTGCTGATT
TCATTCGAATCGAATATTACTTTTTGAGAATAAAAACAATAAATAAAACA
TACAGGTAAACATAAACATACAGGGAGATAAGAAACATAAAGCTTTCAGT
GCAATTTCCTTTTATTGTTTTCACAATACTGAAAAAAAGTTCTGAAAATC
ATTGTGCAATTAGCTCGTAATCACATGATAACTCGTGCAATTCGAAAATT
ATTTATTCTTTCCAATTATTTCCGAATTGCACTCGTTATTTATAGCATGT
CATAATGTGATTTAATGACGGGTATCATATATTTATCTACATAGGGAGAA
GCACAATTTTACGGCATAGACTGGGATGGACCTGCAGTTAACGTAGAGGA
ATCAGACGAATTCAAGAAAGTAACCGTGCCAAGCATTTCCAATCCATTTA
CAGAAGAGCCAATGTTATATATTTTGAACAATTTTGATCTCCAAGCGGGA
AGTCGATACTTTGGTGCCGATATCTACAAGAACTTGATAGATTTTGTAAG
AGACGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038034XLOC_038034Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060471-exon-scaffold_342-1575043694:54903..55254TCONS_00060471-exon-scaffold_342-1575043694:54903..55254Clytia hemisphaericaexon
TCONS_00060471-exon-scaffold_342-1575043694:53446..53660TCONS_00060471-exon-scaffold_342-1575043694:53446..53660Clytia hemisphaericaexon
TCONS_00060471-exon-scaffold_342-1510915933:54903..55254TCONS_00060471-exon-scaffold_342-1510915933:54903..55254Clytia hemisphaericaexon
TCONS_00060471-exon-scaffold_342-1510915933:53446..53660TCONS_00060471-exon-scaffold_342-1510915933:53446..53660Clytia hemisphaericaexon
TCONS_00060471-exon-scaffold_342-1491911889:54903..55254TCONS_00060471-exon-scaffold_342-1491911889:54903..55254Clytia hemisphaericaexon
TCONS_00060471-exon-scaffold_342-1491911889:53446..53660TCONS_00060471-exon-scaffold_342-1491911889:53446..53660Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_342supercontigscaffold_342:53446..55254 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.361416	0.112206	0.329328	8.4967	5.66099	4.76494	5.05566	1.50317	2.79288	4.1304	1.15189	1.31461	1.96253	1.12241	2.10791	2.53665	1.16455	1.05345	2.19878	2.58701	2.94433	1.02263	1.34293	0	0.118378	2.31005	2.32033	1.09697	0.838227
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060471 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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