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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060470 ID=TCONS_00060470|Name=TCONS_00060470|organism=Clytia hemisphaerica|type=transcript|length=279bp
TTTGTACCGTGGTAGCTTTATTGCATCAAAAAGTGTACATAACCAAAGGA
TCGAAAGACTCTGGGGAGAAGCACAATTTTACGGCATAGACTGGGATGGA
CCTGCAGTTAACGTAGAGGAATCAGACGAATTCAAGAAAGTAACCGTGCC
AAGCATTTCCAATCCATTTACAGAAGAGCCAATGTTatatattttgaaca
attttgatcTCCAAGCGGGAAGTCGATACTTTGGTGCCGATATCTACAAG
AACTTGATAGATTTTGTAAGAGACGTAAA Run BLAST on NCBI transcript from alignment at scaffold_342:53446..55237- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060470 ID=TCONS_00060470|Name=TCONS_00060470|organism=Clytia hemisphaerica|type=transcript|length=1792bp|location=Sequence derived from alignment at scaffold_342:53446..55237- (Clytia hemisphaerica)
TTTGTACCGTGGTAGCTTTATTGCATCAAAAAGTGTACATAACCAAAGGA
TCGAAAGACTCTGGGTAGATGTTTACATTGGTGTAACTCAAATTTATCAA
ACTTTGTTTTTTAGATTGGAAATGCTGGTTATCTACATTTGAGTGATCCT
GTACATTTATTTTGCCTTTATCTGGTCTTCTTACCACGAATCAACAACCA
TCTGCATAGTTTTAAGACCAGTTGGAATGTCCATCCTTTAAGTTCCAATC
AAAGTATGACTCCTGATCAGGGCTTTTTAATATTGCTGGTTCTGGAAGTA
CAATTGATAGAGAATTATGGGATCCCTCAAATGATGTAAGATATTTTTTT
TCAGCCAAGATAGAATGGTCAGTCTCTGCCCGTTAAAACTGAAAAGCGAA
AAAACAAAGCATGTAGTGTTTTTCCAGGCAGACCATGGCTATGCGACTGA
CTAGAATGCATACCCAAATCCGCTATTTTGCAAATAAGCTATTTCGTATT
GTCTGGAAAATTACGAGGTATTTTTACATTGTACATACTTATACATTCAA
CATACTATTCGCACTTAGATTCGCGAAATCCTAAGATTTTGTGGGGACAA
GATTTTATACCATCGGACTGAGCCAATCAATTACACGTAATTGCATGACA
TTTTTTATACGAAATAGTAGTAGTAAATTCTTGTATCGTTAAGGAAACCC
AGTGTCACGATATTAAGCAACTCTTTCTAAATCACGTTCTAAATTTAGCA
TGCCATGGTCACATGTAATTTTCGGAAATATTTCGAATACTTCATCTACG
ACTCGTCCCATATAAAACGTTTAGCTTTTTACTATATCATTTTCTTTTGA
AAATAGTACGAGACTTCAGTGCATGACACAAACAACATGAGAATAATGTA
TATTAATTATTCTCAAACACGAAAGGTCATTCTACTTACACAGTTTCCTC
ATAGTGTCTCATTCTCTCCTTTCCAGGAAAAAAATAATATCCTCCCTTCA
CCCCCCCCCCAAGAAATTCCAAAATNTTTCAGCCAAGATAGAATGGCCAG
TCTCTGCCCGTTAAAACTAAGTCCATAGAAAGTCCAAAATTCCCAACCAA
AAAGGAGGATGATACTATGACTAATCGCACGATGAGTTATTTTTTCTTAT
TTGGCGCGCCTTCAAAGAGAGCAGTTATTCGTTAATCACACTCTCGAAAG
GGCGCCAAATTTCTTGAAAAATTGTTCCTTCAAAATTGAGTTTTAATATC
TTTCACATCGTTCTTTCATCGAACGTGCTGATTTCATTCGAATCGAATAT
TACTTTTTGAGAATAAAAACAATAAATAAAACATACAGGTAAACATAAAC
ATACAGGGAGATAAGAAACATAAAGCTTTCAGTGCAATTTCCTTTTATTG
TTTTCACAATACTGAAAAAAAGTTCTGAAAATCATTGTGCAATTAGCTCG
TAATCACATGATAACTCGTGCAATTCGAAAATTATTTATTCTTTCCAATT
ATTTCCGAATTGCACTCGTTATTTATAGCATGTCATAATGTGATTTAATG
ACGGGTATCATATATTTATCTACATAGGGAGAAGCACAATTTTACGGCAT
AGACTGGGATGGACCTGCAGTTAACGTAGAGGAATCAGACGAATTCAAGA
AAGTAACCGTGCCAAGCATTTCCAATCCATTTACAGAAGAGCCAATGTTA
TATATTTTGAACAATTTTGATCTCCAAGCGGGAAGTCGATACTTTGGTGC
CGATATCTACAAGAACTTGATAGATTTTGTAAGAGACGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060470-exon-scaffold_342-1575043694:55174..55237 | TCONS_00060470-exon-scaffold_342-1575043694:55174..55237 | Clytia hemisphaerica | exon |
| TCONS_00060470-exon-scaffold_342-1575043694:53446..53660 | TCONS_00060470-exon-scaffold_342-1575043694:53446..53660 | Clytia hemisphaerica | exon |
| TCONS_00060470-exon-scaffold_342-1510915933:55174..55237 | TCONS_00060470-exon-scaffold_342-1510915933:55174..55237 | Clytia hemisphaerica | exon |
| TCONS_00060470-exon-scaffold_342-1510915933:53446..53660 | TCONS_00060470-exon-scaffold_342-1510915933:53446..53660 | Clytia hemisphaerica | exon |
| TCONS_00060470-exon-scaffold_342-1491911889:55174..55237 | TCONS_00060470-exon-scaffold_342-1491911889:55174..55237 | Clytia hemisphaerica | exon |
| TCONS_00060470-exon-scaffold_342-1491911889:53446..53660 | TCONS_00060470-exon-scaffold_342-1491911889:53446..53660 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_342 | supercontig | scaffold_342:53446..55237 - |
Blast
The following BLAST results are available for this feature:
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