TCONS_00060455 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060455
Unique NameTCONS_00060455
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length552

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060455 ID=TCONS_00060455|Name=TCONS_00060455|organism=Clytia hemisphaerica|type=transcript|length=552bp
GGTTCCGGCGGCTGGACAGTCATTCAACGCCGCGTTGACGGAAGCACCAA
CTTTCAACGTGATTGGAAATCATACAAAAATGGATTTGGTTATCTACAGA
GGGAGTTCTGGCTaggaaatgaaaatatttatcttTTAACTAGACAAGCT
TTACTCACAGGATCAACTGTACGCTTTGAGTTGATCAGAAGAAGCAGTGG
AAGAAAGCTTTGGGCTGAATATTCAACTTTCGAACTAGGTAACGAAGGAA
CAAAATACCAACTAAGGCTTCGTGGTTATAGAGGTAATGTGCGTGATTTG
ATGACATATCACAATGGGGAACGATTTTCGACATTCGACCAAGACAACGA
CTCAGATGGCAATCGGCATTGCGCTCAACTATTTAAAGGAGCCTGGTGGT
TTCACAACTGTCAACATGTCAGTCTTAATGGAGCCTTTGATGCGTTGATG
AACGAGAGAGCGTTTGATTGTATTTGGTGGGGAGATTATGACGACGATGG
ACGGATGATGTTCTCAGAAATAAAGGTTCGCCGGAACTGACCACAACATT
AA
Run BLAST on NCBI

protein sequence of TCONS_00060455-protein

>TCONS_00060455-protein ID=TCONS_00060455-protein|Name=TCONS_00060455-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
GSGGWTVIQRRVDGSTNFQRDWKSYKNGFGYLQREFWLGNENIYLLTRQA
LLTGSTVRFELIRRSSGRKLWAEYSTFELGNEGTKYQLRLRGYRGNVRDL
MTYHNGERFSTFDQDNDSDGNRHCAQLFKGAWWFHNCQHVSLNGAFDALM
NERAFDCIWWGDYDDDGRMMFSEIKVRRN
Run BLAST on NCBI

transcript from alignment at scaffold_341:249326..249877

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060455 ID=TCONS_00060455|Name=TCONS_00060455|organism=Clytia hemisphaerica|type=transcript|length=552bp|location=Sequence derived from alignment at scaffold_341:249326..249877 (Clytia hemisphaerica)
TTAATGTTGTGGTCAGTTCCGGCGAACCTTTATTTCTGAGAACATCATCC
GTCCATCGTCGTCATAATCTCCCCACCAAATACAATCAAACGCTCTCTCG
TTCATCAACGCATCAAAGGCTCCATTAAGACTGACATGTTGACAGTTGTG
AAACCACCAGGCTCCTTTAAATAGTTGAGCGCAATGCCGATTGCCATCTG
AGTCGTTGTCTTGGTCGAATGTCGAAAATCGTTCCCCATTGTGATATGTC
ATCAAATCACGCACATTACCTCTATAACCACGAAGCCTTAGTTGGTATTT
TGTTCCTTCGTTACCTAGTTCGAAAGTTGAATATTCAGCCCAAAGCTTTC
TTCCACTGCTTCTTCTGATCAACTCAAAGCGTACAGTTGATCCTGTGAGT
AAAGCTTGTCTAGTTAAaagataaatattttcatttcctAGCCAGAACTC
CCTCTGTAGATAACCAAATCCATTTTTGTATGATTTCCAATCACGTTGAA
AGTTGGTGCTTCCGTCAACGCGGCGTTGAATGACTGTCCAGCCGCCGGAA
CC

Coding sequence (CDS) from alignment at scaffold_341:249326..249877

>TCONS_00060455 ID=TCONS_00060455|Name=TCONS_00060455|organism=Clytia hemisphaerica|type=CDS|length=540bp|location=Sequence derived from alignment at scaffold_341:249326..249877 (Clytia hemisphaerica)
TCAGTTCCGGCGAACCTTTATTTCTGAGAACATCATCCGTCCATCGTCGT
CATAATCTCCCCACCAAATACAATCAAACGCTCTCTCGTTCATCAACGCA
TCAAAGGCTCCATTAAGACTGACATGTTGACAGTTGTGAAACCACCAGGC
TCCTTTAAATAGTTGAGCGCAATGCCGATTGCCATCTGAGTCGTTGTCTT
GGTCGAATGTCGAAAATCGTTCCCCATTGTGATATGTCATCAAATCACGC
ACATTACCTCTATAACCACGAAGCCTTAGTTGGTATTTTGTTCCTTCGTT
ACCTAGTTCGAAAGTTGAATATTCAGCCCAAAGCTTTCTTCCACTGCTTC
TTCTGATCAACTCAAAGCGTACAGTTGATCCTGTGAGTAAAGCTTGTCTA
GTTAAaagataaatattttcatttcctAGCCAGAACTCCCTCTGTAGATA
ACCAAATCCATTTTTGTATGATTTCCAATCACGTTGAAAGTTGGTGCTTC
CGTCAACGCGGCGTTGAATGACTGTCCAGCCGCCGGAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038021XLOC_038021Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060455-exon-scaffold_341-1491911889:249326..249877TCONS_00060455-exon-scaffold_341-1491911889:249326..249877Clytia hemisphaericaexon
TCONS_00060455-exon-scaffold_341-1510915933:249326..249877TCONS_00060455-exon-scaffold_341-1510915933:249326..249877Clytia hemisphaericaexon
TCONS_00060455-exon-scaffold_341-1575043694:249326..249877TCONS_00060455-exon-scaffold_341-1575043694:249326..249877Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060455-proteinTCONS_00060455-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_341supercontigscaffold_341:249326..249877 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.103434	0.260432	0.633296	0.648232	0	0.110224	0.265961	0	0	0.107964	0	0	0.206371	0.142879	6.20262	10.3006	3.58377	5.0172	0	0.115057	0	0.146338	0.118595	1.01667	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014716Fibrinogen_a/b/g_C_1
IPR014715Fibrinogen_a/b/g_C_2
Blast
[Close]
BLAST of TCONS_00060455 vs. Swiss-Prot (Human)
Match: ANGL2 (Angiopoietin-related protein 2 OS=Homo sapiens GN=ANGPTL2 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.294e-37
Identity = 76/165 (46.06%), Postives = 103/165 (62.42%), Query Frame = 1 
Query:    4 SGGWTVIQRRVDGSTNFQRDWKSYKNGFGYLQREFWLGNENIYLLTRQALLTGSTVRFELIRRSSGRKLWAEYSTFELGNEGTKYQLRLRGYRGNVRDLMTYHNGERFSTFDQDNDS-DGNRHCAQLFKGAWWFHNCQHVSLNGAF--DALMNERAFDCIWWGDY 489
             GGWTVIQRR+DGS NF R+W++YK GFG +  E+WLG ENIY LT Q    G+      +   SGRK++AEY++F L  E   Y+LRL  Y GN  D  T+HNG++F+T D+D+D   GN  CA   KG WW++ C H +LNG +        R  D ++W ++
Sbjct:  313 PGGWTVIQRRLDGSVNFFRNWETYKQGFGNIDGEYWLGLENIYWLTNQ----GNYKLLVTMEDWSGRKVFAEYASFRLEPESEYYKLRLGRYHGNAGDSFTWHNGKQFTTLDRDHDVYTGN--CAHYQKGGWWYNACAHSNLNGVWYRGGHYRSRYQDGVYWAEF 471
The following BLAST results are available for this feature:
BLAST of TCONS_00060455 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANGL27.294e-3746.06Angiopoietin-related protein 2 OS=Homo sapiens GN=... [more]
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