TCONS_00060447 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060447
Unique NameTCONS_00060447
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length574

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060447 ID=TCONS_00060447|Name=TCONS_00060447|organism=Clytia hemisphaerica|type=transcript|length=574bp
CATCTTTATGCGCAGTTTTGAGGAAAACGCTTTCAAAAATTGTCCTCAAG
ACGTAGCACCTCCTAAATACTACCGACGTTACGTAGATGATAGTTTCTTA
CTTTTCAACAACCAGTCTCACGTACTGCCTttctttaattatttgaacgg
gAAACACACGAACATTAAGTTCACGAAAGAGGAAGAGTCACCGACTGATG
AGAGTTTTCCCTTTCTAGATGCAAAAATCAtgaagctaggagggaaattt
gCCACAAGCACATATTACAAACCTACCCACACTGGCCTTTACACTAATTG
CTACAGTTTCACCCCTAGAAAGTACAAACTCAATTTAGTCAAGAATATTC
TTAATAGAGCCTGGAAAATCTGCTCTAATCAAGAACTTTTCAAGAAAGAT
TGGGATGTGATAAAAGGGAACCTTTTAAAGAACAAGTTTCCTGAaaaact
tttgaagtcgttAGCAGATAGTTTTGTTAAGAAGATGAACTCTGTACAAG
ATGAGACCGTTGTCATGACTGTTCCAAAGAAGGAAGTTTCTTTGACTTTA
CCATTTCTTGGGAACTCGTCTGAG
Run BLAST on NCBI

protein sequence of TCONS_00060447-protein

>TCONS_00060447-protein ID=TCONS_00060447-protein|Name=TCONS_00060447-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
IFMRSFEENAFKNCPQDVAPPKYYRRYVDDSFLLFNNQSHVLPFFNYLNG
KHTNIKFTKEEESPTDESFPFLDAKIMKLGGKFATSTYYKPTHTGLYTNC
YSFTPRKYKLNLVKNILNRAWKICSNQELFKKDWDVIKGNLLKNKFPEKL
LKSLADSFVKKMNSVQDETVVMTVPKKEVSLTLPFLGNSSE
Run BLAST on NCBI

transcript from alignment at scaffold_341:118935..119508

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060447 ID=TCONS_00060447|Name=TCONS_00060447|organism=Clytia hemisphaerica|type=transcript|length=574bp|location=Sequence derived from alignment at scaffold_341:118935..119508 (Clytia hemisphaerica)
CTCAGACGAGTTCCCAAGAAATGGTAAAGTCAAAGAAACTTCCTTCTTTG
GAACAGTCATGACAACGGTCTCATCTTGTACAGAGTTCATCTTCTTAACA
AAACTATCTGCTaacgacttcaaaagttttTCAGGAAACTTGTTCTTTAA
AAGGTTCCCTTTTATCACATCCCAATCTTTCTTGAAAAGTTCTTGATTAG
AGCAGATTTTCCAGGCTCTATTAAGAATATTCTTGACTAAATTGAGTTTG
TACTTTCTAGGGGTGAAACTGTAGCAATTAGTGTAAAGGCCAGTGTGGGT
AGGTTTGTAATATGTGCTTGTGGcaaatttccctcctagcttcaTGATTT
TTGCATCTAGAAAGGGAAAACTCTCATCAGTCGGTGACTCTTCCTCTTTC
GTGAACTTAATGTTCGTGTGTTTcccgttcaaataattaaagaaAGGCAG
TACGTGAGACTGGTTGTTGAAAAGTAAGAAACTATCATCTACGTAACGTC
GGTAGTATTTAGGAGGTGCTACGTCTTGAGGACAATTTTTGAAAGCGTTT
TCCTCAAAACTGCGCATAAAGATG

Coding sequence (CDS) from alignment at scaffold_341:118935..119508

>TCONS_00060447 ID=TCONS_00060447|Name=TCONS_00060447|organism=Clytia hemisphaerica|type=CDS|length=573bp|location=Sequence derived from alignment at scaffold_341:118935..119508 (Clytia hemisphaerica)
CTCAGACGAGTTCCCAAGAAATGGTAAAGTCAAAGAAACTTCCTTCTTTG
GAACAGTCATGACAACGGTCTCATCTTGTACAGAGTTCATCTTCTTAACA
AAACTATCTGCTaacgacttcaaaagttttTCAGGAAACTTGTTCTTTAA
AAGGTTCCCTTTTATCACATCCCAATCTTTCTTGAAAAGTTCTTGATTAG
AGCAGATTTTCCAGGCTCTATTAAGAATATTCTTGACTAAATTGAGTTTG
TACTTTCTAGGGGTGAAACTGTAGCAATTAGTGTAAAGGCCAGTGTGGGT
AGGTTTGTAATATGTGCTTGTGGcaaatttccctcctagcttcaTGATTT
TTGCATCTAGAAAGGGAAAACTCTCATCAGTCGGTGACTCTTCCTCTTTC
GTGAACTTAATGTTCGTGTGTTTcccgttcaaataattaaagaaAGGCAG
TACGTGAGACTGGTTGTTGAAAAGTAAGAAACTATCATCTACGTAACGTC
GGTAGTATTTAGGAGGTGCTACGTCTTGAGGACAATTTTTGAAAGCGTTT
TCCTCAAAACTGCGCATAAAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038013XLOC_038013Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060447-exon-scaffold_341-1491911889:118935..119508TCONS_00060447-exon-scaffold_341-1491911889:118935..119508Clytia hemisphaericaexon
TCONS_00060447-exon-scaffold_341-1510915933:118935..119508TCONS_00060447-exon-scaffold_341-1510915933:118935..119508Clytia hemisphaericaexon
TCONS_00060447-exon-scaffold_341-1575043694:118935..119508TCONS_00060447-exon-scaffold_341-1575043694:118935..119508Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060447-proteinTCONS_00060447-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_341supercontigscaffold_341:118935..119508 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.680395	0.947846	1.10054	1.39972	4.3256	1.5537	1.12469	1.98884	0.491448	1.42039	0.787807	0.841544	0.969663	0.939871	0.386351	0.296153	0.948573	0.448734	1.34323	1.72995	0.469889	0.275034	0.668681	0.405285	1.46102	0.651963	1.3328	0.711198	0.647302	0.769414
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060447 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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