TCONS_00060438 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060438
Unique NameTCONS_00060438
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length5054

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060438 ID=TCONS_00060438|Name=TCONS_00060438|organism=Clytia hemisphaerica|type=transcript|length=5054bp
GTTCCATTAGGCGCATACGCCCTCAATGAAAACCGACATGAGGATATGAT
AGAGATTATTGAAAGAATACAAGACAGGTATGTGGTAAAAGATGAATCAG
GCAAAAATACAACCTTCTTTGGTGGTGATCAACTAACAGAAGAAAGGGCA
AGAACAGTGCAAAATGCTCGCGCAGATGGAAAGACAGTGGAAGAACGTTT
GCAAGGCATTACACCAAAATTTGAAGATTGGCATGCCATAAGGACAGCAT
ACGATTCTGCTCTCAAAATCTTCAGAAATACACAAGCTACTGGTGACAGT
GGGACGTATCTTCCAAACGCCATAAAATCAGGCAACAAAAATGCCTTGAG
AAAAGTGGAAAACAAGTTCCAGGAAGTCAAGGAGTTCTTTGATGTCGAAA
CAAAAGCTCTGTTGGTGTCAGGATTTTTGGAGCAAGAAGGTGCAGAGAGG
ATTGAAAATTATCATCCACCGTCTGAACTGGTAACAAAAGACCCTGACAC
AAGGAGAAGATGGCTTCATGGAAGGATACATTTGTTCCTCAAAAACAATG
TCATGGGTTGTTTGAACTCGCTGTCAAAGATGTTACCAGAGCAGCAAACA
CACAAATGCCGTGACAAAAGCTGTACTAAAACCTTCTTCTTTCTGCCTGC
AAAGAATTTGCACGAGGAGATACAGCATGGTCTTCCACCACTGGCAACAC
TGGTACAACCAGAAGCACCCAAAGTCAAAGATGATCTGTACAAATACAGC
TGTACTAGACTCTGCACAGGTCTTTTGCTACTGAATGCTAATGATGCAGT
CAAGGAAGGAGATGGTGATAGACTTGTCCGATTTTACAATATCTTCACTT
TTATTTTTCGCATGAATGGGAATGATAAATATGCCTACATTTGTCTGAGG
CTGAAAGCAAGGGAGCTTGCTTTGCTATCCCCAAGAGACTTTCACCGGCT
TAAATGGAACAGGTTTGTCAATAATCAGGGTGGTTATGGCCAAAACATCT
CATGTGACTTAAGACTTGAGCACATTAACAAAGTAACAAAAGCATTAATA
AAGTCTCAAGGGATGCAAAACCTGACAGACGAAAGTGTGGAGAGTATTAC
AAAATCAATTGGTGGGATGGAGGAGCTAGTCCAGTCCTCTCTTGCTGATG
CTGGTGTCACAAAAAGGTCTGGGCATCACTCGAACAAGCATCAGCACCAA
CTGTTTCATTCCCTTTTCAAAGAGGTCCATTGCATCAgcaaaaactttcg
aaaaacaGAAGGAAGACGACTTGatcatttcaaagattttgacaGTGACA
TTTTCAGTAAATTGAACAAAGTAATGTTATTAAAATGGATCAAACGTTTG
ACAAAAAAGTGGCAAAATCAAGATTTTACATTCAATAGTGAGGAAGACAG
TTGATTTTTTTATATGCGATGCGTTTTTTAGCTAAAGAAGGACAACcaga
tagaaaataaaatttagcctGAAGATTACTTTCATTGTCATAATGCTTAG
AAAAGCCTCTAAATTTTATGGGTTAAAGCTGTTTTTCAAAGCTGACATTG
AATGATaaaaaaacatatcaaaaacatgcaaaaacaatcgaatgtcttca
ttttttctctctccaaatcaaggaaagaGAAAGTACATGAAACTTTCAAT
TATCTTTTTACTTGATACATTAAGTTTACAAAGCATAATTTGGTGCTCAA
AATCATGCTTAGCTTTAGGCATACTGAGCTTCAGCCAAAacttatatgct
tataaaaagagtcTAGCCATTTTGCTTCAGAATGAAGTTTAGGACAAATA
TATATCCTTGATCTAAAGATAATGGAAGAAACCTTTGGtctaaatttgac
ctttttatctggttatccctttaaatCTATTACTTTTATTATTAAAGGGA
GTGTAGTGGTGAACAAATTATTACTGTCACTCCAAATAAATGCCATAAAA
CATTTTCTATAAATAAAACCAGTATAGTAAAATaaataatcataaaaaaa
ttaagagaaaaaTTCTTGCCAAAACACTTCATCTTCAGAATCCAAATCTT
CTGTTTGGTATGGATGGTCCAATGATAACATATCAATTTGGctttcattt
tgatttgttgttgttgattcaGAAACACTTTCAGCTGATTTGGTAGTCAT
GGTTGAAGATTCAAGTGCACCGTAATTAAAAACTTCCATAAAAATTCTGA
TGATGTACATACTTTtgtgttcatcaaaaccaaGAGTCAAGATATCTGCA
TCTGTTTCAATGCAATCAACATTGTCAATCAGTAATTGTTTATCTACCTC
ACTGAAAGCAAGCTGCTCCAGACATTCCAAAACAGCTTGTTTCTCCCTCT
CACCTGTAGATCTTACTTTTTGCAGGGGTTCGGGAGGCTCTGGAACATTT
GGCACAGCTCCAATACAAACATCACACATACAGGATTTTTCACACACATC
ACAACAATCATGTTCCAATAACTTGTTATCTGGGACAACATTAAAGCATT
TCAATAAGGCTAACCTTCTACATAAATCCTCTTTATTTTTAACCACTCTC
ACTAGATCATCATCTTCGCAGTGAGAAAAATCGCAGGCTGGTCGATAAAA
CAGCATTGCTGTGCTTAAATGGCCATCACGACCTGCTCTTCCTATCTCCT
GGATGTATGCCTCCACATCTTTTGGTAGGCCAACATGAATGACATGCCTA
ATATTTCTGATGTTAACACCCATTCCAAGGGCTGAAGTTGCAATAACAAT
GAAACATTCACCCCCTTCAGCTTTTGTGAACTCTTCCATTACTTCTGCCC
TGCGATGTGAGGGAGTCTTTCCATGAAAAACACGAACAGTTTTACCACgg
tattttgaaggaaaaagcaTAAATATCTCACCACATCGACCAATGTTATG
GCAGTAGATGATTGTTTTCTCGCACTTCCCATTCAAATCAAACTCATCCA
GTATTGGCTTCATGTGTGATTGAACCTCACTGAAGTCGGATgtgattttc
agtttttgagctGAAATCTTTACATTGGGCTTCTCAGGAGAAAACCTTTC
AGTCTTATAATTTCTCAACTGAACCAACTTAAcaatttttcttgttgttt
tacgATTTGCCGTAGCAGTTAAACATAAGAAGGGCTTATTGAACATTGCC
CTCAAGTTTCCAACTTTAGCATACATTTGACGAAATGCAGTTTTTTGGGT
AGAAGGAAGGCCCCTGAAAATGacgaaatggacaaaaataattttaagtc
aatgcatcaaatttaaattcaaaGGTCTGTTTAAAGCTTTTATATTGAAA
TCAAACTTTATATAATGTAGAtgctttaaaggttttcttgTTCATACTAG
GCTAGTTGTGAATCTAACAAGGCTAAGATTACATGATATTATGAAATAAT
TATTGTTTTTGATTAATCTTATtctgaaaaaagatatttttattatttat
atttatatatacttttgtttttaaaatgtgtGTATTGTGTATATATTGTA
TGTTTATTAGAAATTATGAATATTTTACTACTGTAataccgtgaagttgg
gtaacttgcatcagtggagggtaacttgcacagccatcaaatgactgacc
aatcaaagcagcaaaatttcaaaataaatcaactacgcagctccgctcgc
agctctactcttccagttttgttttgatttaactttgtattttaatgaac
aGCCAGGCTATTCATTTGATGGcaatgcatgttagcctccactgatgcaa
gtacCTGTATGATGATCTAACGgttatatatatatttaaaaTGCATTCAT
TCTGTTTTCTTCAAACTCTATGTAATTATACATTTATaaacaaattgttt
ttttgttttttttcttgtgaaATTTTATCATGCTTTTTGATGTTGTTTGG
TATTTCTAGTAATGCATGTAGTCATGTAATACCATCAAACTTAGCTTGTT
AGATACTGTAAGtatatatattatttaaaaagatcttttgaaatttgata
tttatttaaagtttttgtTATCTTTTTAGCTAGAAATATTGTTAAGTACA
TCCTTACAAAATAAGTACGTTCCTTTCTTTATTCACTTTTTGCAAATTTA
GATTTCTCCTGATTATGTTTGTAGGACacgatgtcatgttgaatattTCT
AAGACCACTTGACCATCAAACAATGAGATGAAAATGTTTAGTATTTAGTA
CTTGTTTACTAGTTATTTTTTGGAAGCTGGACCCTTCAACATGACATTGT
GTCATAATAAAAGAACTTTATTACactttattgtatttttaattAAGTTC
CATTATTTCCTCACCATTTAACAACAACATGCACTTCATCAATGACAACA
CCAATTACTCTCGGAGAGAGTTTGAGAAGTAGTTCTCGAAATGTTTCCTC
TAGTAGGCACTCAGggcttgaaaataataaatcaaaattgcCATCCTTAA
CATCCTTTAAACTGTCTTTGGTTAAATGAACAGCTTTGATGCCAATTTCT
GCACAGCGTTTTATCTGGTCATCAATTAATGCAGTGATTGGAAATATCAC
AATAAGAATAGGATCTTCTTCTGGGTGGAAATATTTGTAGACCCCAGGAA
CAAGATGGAAAATAAGAGATTTCCCATAATTTGTTGGGAGAACCCCTACA
CAGTCATGTCCACTCAAAAAATTGAAGAGCAACCTTTCCTGTCCTtcctt
cagcttttcaaagtcaaatccatattcttttaaaagatacCTTGTACATT
CTTGAAAGTTGGTGTGATTAAACTCTGCTACCATGATGTATTTTCAGAAC
TTTTTGAGAAACCGAAAGTACTCGGGTTGATGTTTTGATTTGGTCCGCGT
TTGCAGAAAGAATCCAGCCCTCGTTTTGGGGGCTTGTCGGGTTGAGCATT
AACTTTCTCAAGCTTTACGGCTAAGGacagttgaacccgactggggatgc
ggcacatcaaaggccgactatcattcctctccgatgggaaattggcccgc
tccctttagagctttagcgtgggcggccgccaatccgccatcggaatatc
agat
Run BLAST on NCBI

protein sequence of TCONS_00060438-protein

>TCONS_00060438-protein ID=TCONS_00060438-protein|Name=TCONS_00060438-protein|organism=Clytia hemisphaerica|type=polypeptide|length=467bp
VPLGAYALNENRHEDMIEIIERIQDRYVVKDESGKNTTFFGGDQLTEERA
RTVQNARADGKTVEERLQGITPKFEDWHAIRTAYDSALKIFRNTQATGDS
GTYLPNAIKSGNKNALRKVENKFQEVKEFFDVETKALLVSGFLEQEGAER
IENYHPPSELVTKDPDTRRRWLHGRIHLFLKNNVMGCLNSLSKMLPEQQT
HKCRDKSCTKTFFFLPAKNLHEEIQHGLPPLATLVQPEAPKVKDDLYKYS
CTRLCTGLLLLNANDAVKEGDGDRLVRFYNIFTFIFRMNGNDKYAYICLR
LKARELALLSPRDFHRLKWNRFVNNQGGYGQNISCDLRLEHINKVTKALI
KSQGMQNLTDESVESITKSIGGMEELVQSSLADAGVTKRSGHHSNKHQHQ
LFHSLFKEVHCISKNFRKTEGRRLDHFKDFDSDIFSKLNKVMLLKWIKRL
TKKWQNQDFTFNSEEDS
Run BLAST on NCBI

transcript from alignment at scaffold_341:509835..515697-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060438 ID=TCONS_00060438|Name=TCONS_00060438|organism=Clytia hemisphaerica|type=transcript|length=5863bp|location=Sequence derived from alignment at scaffold_341:509835..515697- (Clytia hemisphaerica)
GTTCCATTAGGCGCATACGCCCTCAATGAAAACCGACATGAGGATATGAT
AGAGATTATTGAAAGAATACAAGACAGGTAAACAAAAACATCTTTCATCA
GAGAGAGAGAGAGAGAAAAATTAGATCCTATTCTTGACATCCCTTTAGCT
TAAAAAATATCTCCATAAATTCCTGCTCAAATTTTGTCAACCTTCTGTTA
CCAGGGAAACGAACATTTATTTAAGAGCTCAAAAACTAAAAAAACTTCAA
TAATGATTTTCAGGTATGTGGTAAAAGATGAATCAGGCAAAAATACAACC
TTCTTTGGTGGTGATCAACTAACAGAAGAAAGGGCAAGAACAGTGCAAAA
TGCTCGCGCAGATGGAAAGACAGTGGAAGAACGTTTGCAAGGCATTACAC
CAAAATTTGAAGATTGGCATGCCATAAGGACAGCATACGATGTAAATATA
TTTATTTAAATGAACTTGATTTGCCTGCTAAGAGATGAATATAATACATC
ATGTTTATCACTGATTGTATTAAAAGTCAATACAAAACAACAAAATAATT
TGATATTATATGTTTATCATAAGTAAAGACCTATATGCAGTGTTTTGTTG
GCTGGTGCATTCTTCAGGCAATACAGGACTTAGTATTAACCCCACAATAT
TTTCCTATTTCTTCCATTTTAGTCTGCTCTCAAAATCTTCAGAAATACAC
AAGCTACTGGTGACAGTGGGACGTATCTTCCAAACGCCATAAAATCAGGC
AACAAAAATGCCTTGAGAAAAGTGGAAAACAAGTTCCAGGAAGTCAAGGA
GTTCTTTGATGTCGAAACAAAAGCTCTGTTGGTGTCAGGATTTTTGGAGC
AAGAAGGTAAAGAGAATTGATGGTCAGAAATGTCAAAAAAGTAGAAGGCT
TGAGGTCATTACTAAGATGATAAGATTTGGTTGTGATTGATGCTGCACAG
TGCTCAATGGAGACCAGAGCCATATACAAAATTAAAACATCTTTTATCAC
AACGATGGATTGATGGATACAATTCTAGAAACTTCAAGTTTTGTATAATT
TAACTTTATTTGTTATAATTCAGGTGCAGAGAGGATTGAAAATTATCATC
CACCGTCTGAACTGGTAACAAAAGACCCTGACACAAGGAGAAGATGGCTT
CATGGAAGGATACATTTGTTCCTCAAAAACAATGTCATGGGTTGTTTGAA
CTCGCTGTCAAAGATGTTACCAGAGCAGCAAACACACAAATGCCGTGACA
AAAGCTGTACTAAAGTAAGATTCTTTCAAGACAAAATCCACCCAAATTCT
AATTAGTACTGAGAGATAAAAGAAATAACAGCAATTTTTCTTGTTTTTTG
AAATTATTCCAGGCCAACAAAAAAATTAAAAATATTTATCAGAAGAGATC
AACAGCCTATGAACACATTCGTTCTCTTCTTTTTACTAGACCTTCTTCTT
TCTGCCTGCAAAGAATTTGCACGAGGAGATACAGCATGGTCTTCCACCAC
TGGCAACACTGGTACAACCAGAAGCACCCAAAGTCAAAGATGATCTGTAC
AAATACAGCTGTACTAGACTCTGCACAGGTCTTTTGCTACTGAATGCTAA
TGATGCAGTCAAGGAAGGAGATGGTGATAGACTTGTCCGATTTTACAATA
TCTTCACTTTTATTTTTCGCATGAATGGGAATGATAAATATGCCTACATT
TGTCTGAGGCTGAAAGCAAGGGAGCTTGCTTTGCTATCCCCAAGAGACTT
TCACCGGCTTAAATGGAACAGGTTTGTCAATAATCAGGGTGGTTATGGCC
AAAACATCTCATGTGACTTAAGACTTGAGCACATTAACAAAGTAACAAAA
GCATTAATAAAGTCTCAAGGGATGCAAAACCTGACAGACGAAAGTGTGGA
GAGTATTACAAAATCAATTGGTGGGATGGAGGAGCTAGTCCAGTCCTCTC
TTGCTGATGCTGGTGTCACAAAAAGGTCTGGGCATCACTCGAACAAGCAT
CAGCACCAACTGTTTCATTCCCTTTTCAAAGAGGTCCATTGCATCAGCAA
AAACTTTCGAAAAACAGAAGGAAGACGACTTGATCATTTCAAAGATTTTG
ACAGTGACATTTTCAGTAAATTGAACAAAGTAATGTTATTAAAATGGATC
AAACGTTTGACAAAAAAGTGGCAAAATCAAGATTTTACATTCAATAGTGA
GGAAGACAGTTGATTTTTTTATATGCGATGCGTTTTTTAGCTAAAGAAGG
ACAACCAGATAGAAAATAAAATTTAGCCTGAAGATTACTTTCATTGTCAT
AATGCTTAGAAAAGCCTCTAAATTTTATGGGTTAAAGCTGTTTTTCAAAG
CTGACATTGAATGATAAAAAAACATATCAAAAACATGCAAAAACAATCGA
ATGTCTTCATTTTTTCTCTCTCCAAATCAAGGAAAGAGAAAGTACATGAA
ACTTTCAATTATCTTTTTACTTGATACATTAAGTTTACAAAGCATAATTT
GGTGCTCAAAATCATGCTTAGCTTTAGGCATACTGAGCTTCAGCCAAAAC
TTATATGCTTATAAAAAGAGTCTAGCCATTTTGCTTCAGAATGAAGTTTA
GGACAAATATATATCCTTGATCTAAAGATAATGGAAGAAACCTTTGGTCT
AAATTTGACCTTTTTATCTGGTTATCCCTTTAAATCTATTACTTTTATTA
TTAAAGGGAGTGTAGTGGTGAACAAATTATTACTGTCACTCCAAATAAAT
GCCATAAAACATTTTCTATAAATAAAACCAGTATAGTAAAATAAATAATC
ATAAAAAAATTAAGAGAAAAATTCTTGCCAAAACACTTCATCTTCAGAAT
CCAAATCTTCTGTTTGGTATGGATGGTCCAATGATAACATATCAATTTGG
CTTTCATTTTGATTTGTTGTTGTTGATTCAGAAACACTTTCAGCTGATTT
GGTAGTCATGGTTGAAGATTCAAGTGCACCGTAATTAAAAACTTCCATAA
AAATTCTGATGATGTACATACTTTTGTGTTCATCAAAACCAAGAGTCAAG
ATATCTGCATCTGTTTCAATGCAATCAACATTGTCAATCAGTAATTGTTT
ATCTACCTCACTGAAAGCAAGCTGCTCCAGACATTCCAAAACAGCTTGTT
TCTCCCTCTCACCTGTAGATCTTACTTTTTGCAGGGGTTCGGGAGGCTCT
GGAACATTTGGCACAGCTCCAATACAAACATCACACATACAGGATTTTTC
ACACACATCACAACAATCATGTTCCAATAACTTGTTATCTGGGACAACAT
TAAAGCATTTCAATAAGGCTAACCTTCTACATAAATCCTCTTTATTTTTA
ACCACTCTCACTAGATCATCATCTTCGCAGTGAGAAAAATCGCAGGCTGG
TCGATAAAACAGCATTGCTGTGCTTAAATGGCCATCACGACCTGCTCTTC
CTATCTCCTGGATGTATGCCTCCACATCTTTTGGTAGGCCAACATGAATG
ACATGCCTAATATTTCTGATGTTAACACCCATTCCAAGGGCTGAAGTTGC
AATAACAATGAAACATTCACCCCCTTCAGCTTTTGTGAACTCTTCCATTA
CTTCTGCCCTGCGATGTGAGGGAGTCTTTCCATGAAAAACACGAACAGTT
TTACCACGGTATTTTGAAGGAAAAAGCATAAATATCTCACCACATCGACC
AATGTTATGGCAGTAGATGATTGTTTTCTCGCACTTCCCATTCAAATCAA
ACTCATCCAGTATTGGCTTCATGTGTGATTGAACCTCACTGAAGTCGGAT
GTGATTTTCAGTTTTTGAGCTGAAATCTTTACATTGGGCTTCTCAGGAGA
AAACCTTTCAGTCTTATAATTTCTCAACTGAACCAACTTAACAATTTTTC
TTGTTGTTTTACGATTTGCCGTAGCAGTTAAACATAAGAAGGGCTTATTG
AACATTGCCCTCAAGTTTCCAACTTTAGCATACATTTGACGAAATGCAGT
TTTTTGGGTAGAAGGAAGGCCCCTGAAAATGACGAAATGGACAAAAATAA
TTTTAAGTCAATGCATCAAATTTAAATTCAAAGGTCTGTTTAAAGCTTTT
ATATTGAAATCAAACTTTATATAATGTAGATGCTTTAAAGGTTTTCTTGT
TCATACTAGGCTAGTTGTGAATCTAACAAGGCTAAGATTACATGATATTA
TGAAATAATTATTGTTTTTGATTAATCTTATTCTGAAAAAAGATATTTTT
ATTATTTATATTTATATATACTTTTGTTTTTAAAATGTGTGTATTGTGTA
TATATTGTATGTTTATTAGAAATTATGAATATTTTACTACTGTAATACCG
TGAAGTTGGGTAACTTGCATCAGTGGAGGGTAACTTGCACAGCCATCAAA
TGACTGACCAATCAAAGCAGCAAAATTTCAAAATAAATCAACTACGCAGC
TCCGCTCGCAGCTCTACTCTTCCAGTTTTGTTTTGATTTAACTTTGTATT
TTAATGAACAGCCAGGCTATTCATTTGATGGCAATGCATGTTAGCCTCCA
CTGATGCAAGTACCTGTATGATGATCTAACGGTTATATATATATTTAAAA
TGCATTCATTCTGTTTTCTTCAAACTCTATGTAATTATACATTTATAAAC
AAATTGTTTTTTTGTTTTTTTTCTTGTGAAATTTTATCATGCTTTTTGAT
GTTGTTTGGTATTTCTAGTAATGCATGTAGTCATGTAATACCATCAAACT
TAGCTTGTTAGATACTGTAAGTATATATATTATTTAAAAAGATCTTTTGA
AATTTGATATTTATTTAAAGTTTTTGTTATCTTTTTAGCTAGAAATATTG
TTAAGTACATCCTTACAAAATAAGTACGTTCCTTTCTTTATTCACTTTTT
GCAAATTTAGATTTCTCCTGATTATGTTTGTAGGACACGATGTCATGTTG
AATATTTCTAAGACCACTTGACCATCAAACAATGAGATGAAAATGTTTAG
TATTTAGTACTTGTTTACTAGTTATTTTTTGGAAGCTGGACCCTTCAACA
TGACATTGTGTCATAATAAAAGAACTTTATTACACTTTATTGTATTTTTA
ATTAAGTTCCATTATTTCCTCACCATTTAACAACAACATGCACTTCATCA
ATGACAACACCAATTACTCTCGGAGAGAGTTTGAGAAGTAGTTCTCGAAA
TGTTTCCTCTAGTAGGCACTCAGGGCTTGAAAATAATAAATCAAAATTGC
CATCCTTAACATCCTTTAAACTGTCTTTGGTTAAATGAACAGCTTTGATG
CCAATTTCTGCACAGCGTTTTATCTGGTCATCAATTAATGCAGTGATTGG
AAATATCACAATAAGAATAGGATCTTCTTCTGGGTGGAAATATTTGTAGA
CCCCAGGAACAAGATGGAAAATAAGAGATTTCCCATAATTTGTTGGGAGA
ACCCCTACACAGTCATGTCCACTCAAAAAATTGAAGAGCAACCTTTCCTG
TCCTTCCTTCAGCTTTTCAAAGTCAAATCCATATTCTTTTAAAAGATACC
TTGTACATTCTTGAAAGTTGGTGTGATTAAACTCTGCTACCATGATGTAT
TTTCAGAACTTTTTGAGAAACCGAAAGTACTCGGGTTGATGTTTTGATTT
GGTCCGCGTTTGCAGAAAGAATCCAGCCCTCGTTTTGGGGGCTTGTCGGG
TTGAGCATTAACTTTCTCAAGCTTTACGGCTAAGGACAGTTGAACCCGAC
TGGGGATGCGGCACATCAAAGGCCGACTATCATTCCTCTCCGATGGGAAA
TTGGCCCGCTCCCTTTAGAGCTTTAGCGTGGGCGGCCGCCAATCCGCCAT
CGGAATATCAGAT

Coding sequence (CDS) from alignment at scaffold_341:509835..515697-

>TCONS_00060438 ID=TCONS_00060438|Name=TCONS_00060438|organism=Clytia hemisphaerica|type=CDS|length=7020bp|location=Sequence derived from alignment at scaffold_341:509835..515697- (Clytia hemisphaerica)
ACCTTCTTCTTTCTGCCTGCAAAGAATTTGCACGAGGAGATACAGCATGG
TCTTCCACCACTGGCAACACTGGTACAACCAGAAGCACCCAAAGTCAAAG
ATGATCTGTACAAATACAGCTGTACTAGACTCTGCACAGGTCTTTTGCTA
CTGAATGCTAATGATGCAGTCAAGGAAGGAGATGGTGATAGACTTGTCCG
ATTTTACAATATCTTCACTTTTATTTTTCGCATGAATGGGAATGATAAAT
ATGCCTACATTTGTCTGAGGCTGAAAGCAAGGGAGCTTGCTTTGCTATCC
CCAAGAGACTTTCACCGGCTTAAATGGAACAGGTTTGTCAATAATCAGGG
TGGTTATGGCCAAAACATCTCATGTGACTTAAGACTTGAGCACATTAACA
AAGTAACAAAAGCATTAATAAAGTCTCAAGGGATGCAAAACCTGACAGAC
GAAAGTGTGGAGAGTATTACAAAATCAATTGGTGGGATGGAGGAGCTAGT
CCAGTCCTCTCTTGCTGATGCTGGTGTCACAAAAAGGTCTGGGCATCACT
CGAACAAGCATCAGCACCAACTGTTTCATTCCCTTTTCAAAGAGGTCCAT
TGCATCAGCAAAAACTTTCGAAAAACAGAAGGAAGACGACTTGATCATTT
CAAAGATTTTGACAGTGACATTTTCAGTAAATTGAACAAAGTAATGTTAT
TAAAATGGATCAAACGTTTGACAAAAAAGTGGCAAAATCAAGATTTTACA
TTCAATAGTGAGGAAGACAGTTGAGTGCAGAGAGGATTGAAAATTATCAT
CCACCGTCTGAACTGGTAACAAAAGACCCTGACACAAGGAGAAGATGGCT
TCATGGAAGGATACATTTGTTCCTCAAAAACAATGTCATGGGTTGTTTGA
ACTCGCTGTCAAAGATGTTACCAGAGCAGCAAACACACAAATGCCGTGAC
AAAAGCTGTACTAAATCTGCTCTCAAAATCTTCAGAAATACACAAGCTAC
TGGTGACAGTGGGACGTATCTTCCAAACGCCATAAAATCAGGCAACAAAA
ATGCCTTGAGAAAAGTGGAAAACAAGTTCCAGGAAGTCAAGGAGTTCTTT
GATGTCGAAACAAAAGCTCTGTTGGTGTCAGGATTTTTGGAGCAAGAAGG
TATGTGGTAAAAGATGAATCAGGCAAAAATACAACCTTCTTTGGTGGTGA
TCAACTAACAGAAGAAAGGGCAAGAACAGTGCAAAATGCTCGCGCAGATG
GAAAGACAGTGGAAGAACGTTTGCAAGGCATTACACCAAAATTTGAAGAT
TGGCATGCCATAAGGACAGCATACGATGTTCCATTAGGCGCATACGCCCT
CAATGAAAACCGACATGAGGATATGATAGAGATTATTGAAAGAATACAAG
ACAGACCTTCTTCTTTCTGCCTGCAAAGAATTTGCACGAGGAGATACAGC
ATGGTCTTCCACCACTGGCAACACTGGTACAACCAGAAGCACCCAAAGTC
AAAGATGATCTGTACAAATACAGCTGTACTAGACTCTGCACAGGTCTTTT
GCTACTGAATGCTAATGATGCAGTCAAGGAAGGAGATGGTGATAGACTTG
TCCGATTTTACAATATCTTCACTTTTATTTTTCGCATGAATGGGAATGAT
AAATATGCCTACATTTGTCTGAGGCTGAAAGCAAGGGAGCTTGCTTTGCT
ATCCCCAAGAGACTTTCACCGGCTTAAATGGAACAGGTTTGTCAATAATC
AGGGTGGTTATGGCCAAAACATCTCATGTGACTTAAGACTTGAGCACATT
AACAAAGTAACAAAAGCATTAATAAAGTCTCAAGGGATGCAAAACCTGAC
AGACGAAAGTGTGGAGAGTATTACAAAATCAATTGGTGGGATGGAGGAGC
TAGTCCAGTCCTCTCTTGCTGATGCTGGTGTCACAAAAAGGTCTGGGCAT
CACTCGAACAAGCATCAGCACCAACTGTTTCATTCCCTTTTCAAAGAGGT
CCATTGCATCAGCAAAAACTTTCGAAAAACAGAAGGAAGACGACTTGATC
ATTTCAAAGATTTTGACAGTGACATTTTCAGTAAATTGAACAAAGTAATG
TTATTAAAATGGATCAAACGTTTGACAAAAAAGTGGCAAAATCAAGATTT
TACATTCAATAGTGAGGAAGACAGTTGAGTGCAGAGAGGATTGAAAATTA
TCATCCACCGTCTGAACTGGTAACAAAAGACCCTGACACAAGGAGAAGAT
GGCTTCATGGAAGGATACATTTGTTCCTCAAAAACAATGTCATGGGTTGT
TTGAACTCGCTGTCAAAGATGTTACCAGAGCAGCAAACACACAAATGCCG
TGACAAAAGCTGTACTAAATCTGCTCTCAAAATCTTCAGAAATACACAAG
CTACTGGTGACAGTGGGACGTATCTTCCAAACGCCATAAAATCAGGCAAC
AAAAATGCCTTGAGAAAAGTGGAAAACAAGTTCCAGGAAGTCAAGGAGTT
CTTTGATGTCGAAACAAAAGCTCTGTTGGTGTCAGGATTTTTGGAGCAAG
AAGGTATGTGGTAAAAGATGAATCAGGCAAAAATACAACCTTCTTTGGTG
GTGATCAACTAACAGAAGAAAGGGCAAGAACAGTGCAAAATGCTCGCGCA
GATGGAAAGACAGTGGAAGAACGTTTGCAAGGCATTACACCAAAATTTGA
AGATTGGCATGCCATAAGGACAGCATACGATGTTCCATTAGGCGCATACG
CCCTCAATGAAAACCGACATGAGGATATGATAGAGATTATTGAAAGAATA
CAAGACAGACCTTCTTCTTTCTGCCTGCAAAGAATTTGCACGAGGAGATA
CAGCATGGTCTTCCACCACTGGCAACACTGGTACAACCAGAAGCACCCAA
AGTCAAAGATGATCTGTACAAATACAGCTGTACTAGACTCTGCACAGGTC
TTTTGCTACTGAATGCTAATGATGCAGTCAAGGAAGGAGATGGTGATAGA
CTTGTCCGATTTTACAATATCTTCACTTTTATTTTTCGCATGAATGGGAA
TGATAAATATGCCTACATTTGTCTGAGGCTGAAAGCAAGGGAGCTTGCTT
TGCTATCCCCAAGAGACTTTCACCGGCTTAAATGGAACAGGTTTGTCAAT
AATCAGGGTGGTTATGGCCAAAACATCTCATGTGACTTAAGACTTGAGCA
CATTAACAAAGTAACAAAAGCATTAATAAAGTCTCAAGGGATGCAAAACC
TGACAGACGAAAGTGTGGAGAGTATTACAAAATCAATTGGTGGGATGGAG
GAGCTAGTCCAGTCCTCTCTTGCTGATGCTGGTGTCACAAAAAGGTCTGG
GCATCACTCGAACAAGCATCAGCACCAACTGTTTCATTCCCTTTTCAAAG
AGGTCCATTGCATCAGCAAAAACTTTCGAAAAACAGAAGGAAGACGACTT
GATCATTTCAAAGATTTTGACAGTGACATTTTCAGTAAATTGAACAAAGT
AATGTTATTAAAATGGATCAAACGTTTGACAAAAAAGTGGCAAAATCAAG
ATTTTACATTCAATAGTGAGGAAGACAGTTGAGTGCAGAGAGGATTGAAA
ATTATCATCCACCGTCTGAACTGGTAACAAAAGACCCTGACACAAGGAGA
AGATGGCTTCATGGAAGGATACATTTGTTCCTCAAAAACAATGTCATGGG
TTGTTTGAACTCGCTGTCAAAGATGTTACCAGAGCAGCAAACACACAAAT
GCCGTGACAAAAGCTGTACTAAATCTGCTCTCAAAATCTTCAGAAATACA
CAAGCTACTGGTGACAGTGGGACGTATCTTCCAAACGCCATAAAATCAGG
CAACAAAAATGCCTTGAGAAAAGTGGAAAACAAGTTCCAGGAAGTCAAGG
AGTTCTTTGATGTCGAAACAAAAGCTCTGTTGGTGTCAGGATTTTTGGAG
CAAGAAGGTATGTGGTAAAAGATGAATCAGGCAAAAATACAACCTTCTTT
GGTGGTGATCAACTAACAGAAGAAAGGGCAAGAACAGTGCAAAATGCTCG
CGCAGATGGAAAGACAGTGGAAGAACGTTTGCAAGGCATTACACCAAAAT
TTGAAGATTGGCATGCCATAAGGACAGCATACGATGTTCCATTAGGCGCA
TACGCCCTCAATGAAAACCGACATGAGGATATGATAGAGATTATTGAAAG
AATACAAGACAGACCTTCTTCTTTCTGCCTGCAAAGAATTTGCACGAGGA
GATACAGCATGGTCTTCCACCACTGGCAACACTGGTACAACCAGAAGCAC
CCAAAGTCAAAGATGATCTGTACAAATACAGCTGTACTAGACTCTGCACA
GGTCTTTTGCTACTGAATGCTAATGATGCAGTCAAGGAAGGAGATGGTGA
TAGACTTGTCCGATTTTACAATATCTTCACTTTTATTTTTCGCATGAATG
GGAATGATAAATATGCCTACATTTGTCTGAGGCTGAAAGCAAGGGAGCTT
GCTTTGCTATCCCCAAGAGACTTTCACCGGCTTAAATGGAACAGGTTTGT
CAATAATCAGGGTGGTTATGGCCAAAACATCTCATGTGACTTAAGACTTG
AGCACATTAACAAAGTAACAAAAGCATTAATAAAGTCTCAAGGGATGCAA
AACCTGACAGACGAAAGTGTGGAGAGTATTACAAAATCAATTGGTGGGAT
GGAGGAGCTAGTCCAGTCCTCTCTTGCTGATGCTGGTGTCACAAAAAGGT
CTGGGCATCACTCGAACAAGCATCAGCACCAACTGTTTCATTCCCTTTTC
AAAGAGGTCCATTGCATCAGCAAAAACTTTCGAAAAACAGAAGGAAGACG
ACTTGATCATTTCAAAGATTTTGACAGTGACATTTTCAGTAAATTGAACA
AAGTAATGTTATTAAAATGGATCAAACGTTTGACAAAAAAGTGGCAAAAT
CAAGATTTTACATTCAATAGTGAGGAAGACAGTTGAGTGCAGAGAGGATT
GAAAATTATCATCCACCGTCTGAACTGGTAACAAAAGACCCTGACACAAG
GAGAAGATGGCTTCATGGAAGGATACATTTGTTCCTCAAAAACAATGTCA
TGGGTTGTTTGAACTCGCTGTCAAAGATGTTACCAGAGCAGCAAACACAC
AAATGCCGTGACAAAAGCTGTACTAAATCTGCTCTCAAAATCTTCAGAAA
TACACAAGCTACTGGTGACAGTGGGACGTATCTTCCAAACGCCATAAAAT
CAGGCAACAAAAATGCCTTGAGAAAAGTGGAAAACAAGTTCCAGGAAGTC
AAGGAGTTCTTTGATGTCGAAACAAAAGCTCTGTTGGTGTCAGGATTTTT
GGAGCAAGAAGGTATGTGGTAAAAGATGAATCAGGCAAAAATACAACCTT
CTTTGGTGGTGATCAACTAACAGAAGAAAGGGCAAGAACAGTGCAAAATG
CTCGCGCAGATGGAAAGACAGTGGAAGAACGTTTGCAAGGCATTACACCA
AAATTTGAAGATTGGCATGCCATAAGGACAGCATACGATGTTCCATTAGG
CGCATACGCCCTCAATGAAAACCGACATGAGGATATGATAGAGATTATTG
AAAGAATACAAGACAGACCTTCTTCTTTCTGCCTGCAAAGAATTTGCACG
AGGAGATACAGCATGGTCTTCCACCACTGGCAACACTGGTACAACCAGAA
GCACCCAAAGTCAAAGATGATCTGTACAAATACAGCTGTACTAGACTCTG
CACAGGTCTTTTGCTACTGAATGCTAATGATGCAGTCAAGGAAGGAGATG
GTGATAGACTTGTCCGATTTTACAATATCTTCACTTTTATTTTTCGCATG
AATGGGAATGATAAATATGCCTACATTTGTCTGAGGCTGAAAGCAAGGGA
GCTTGCTTTGCTATCCCCAAGAGACTTTCACCGGCTTAAATGGAACAGGT
TTGTCAATAATCAGGGTGGTTATGGCCAAAACATCTCATGTGACTTAAGA
CTTGAGCACATTAACAAAGTAACAAAAGCATTAATAAAGTCTCAAGGGAT
GCAAAACCTGACAGACGAAAGTGTGGAGAGTATTACAAAATCAATTGGTG
GGATGGAGGAGCTAGTCCAGTCCTCTCTTGCTGATGCTGGTGTCACAAAA
AGGTCTGGGCATCACTCGAACAAGCATCAGCACCAACTGTTTCATTCCCT
TTTCAAAGAGGTCCATTGCATCAGCAAAAACTTTCGAAAAACAGAAGGAA
GACGACTTGATCATTTCAAAGATTTTGACAGTGACATTTTCAGTAAATTG
AACAAAGTAATGTTATTAAAATGGATCAAACGTTTGACAAAAAAGTGGCA
AAATCAAGATTTTACATTCAATAGTGAGGAAGACAGTTGAGTGCAGAGAG
GATTGAAAATTATCATCCACCGTCTGAACTGGTAACAAAAGACCCTGACA
CAAGGAGAAGATGGCTTCATGGAAGGATACATTTGTTCCTCAAAAACAAT
GTCATGGGTTGTTTGAACTCGCTGTCAAAGATGTTACCAGAGCAGCAAAC
ACACAAATGCCGTGACAAAAGCTGTACTAAATCTGCTCTCAAAATCTTCA
GAAATACACAAGCTACTGGTGACAGTGGGACGTATCTTCCAAACGCCATA
AAATCAGGCAACAAAAATGCCTTGAGAAAAGTGGAAAACAAGTTCCAGGA
AGTCAAGGAGTTCTTTGATGTCGAAACAAAAGCTCTGTTGGTGTCAGGAT
TTTTGGAGCAAGAAGGTATGTGGTAAAAGATGAATCAGGCAAAAATACAA
CCTTCTTTGGTGGTGATCAACTAACAGAAGAAAGGGCAAGAACAGTGCAA
AATGCTCGCGCAGATGGAAAGACAGTGGAAGAACGTTTGCAAGGCATTAC
ACCAAAATTTGAAGATTGGCATGCCATAAGGACAGCATACGATGTTCCAT
TAGGCGCATACGCCCTCAATGAAAACCGACATGAGGATATGATAGAGATT
ATTGAAAGAATACAAGACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038005XLOC_038005Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060438-proteinTCONS_00060438-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060438-exon-scaffold_341-1575043694:515621..515697TCONS_00060438-exon-scaffold_341-1575043694:515621..515697Clytia hemisphaericaexon
TCONS_00060438-exon-scaffold_341-1575043694:515257..515434TCONS_00060438-exon-scaffold_341-1575043694:515257..515434Clytia hemisphaericaexon
TCONS_00060438-exon-scaffold_341-1575043694:514842..515025TCONS_00060438-exon-scaffold_341-1575043694:514842..515025Clytia hemisphaericaexon
TCONS_00060438-exon-scaffold_341-1575043694:514434..514624TCONS_00060438-exon-scaffold_341-1575043694:514434..514624Clytia hemisphaericaexon
TCONS_00060438-exon-scaffold_341-1575043694:509835..514258TCONS_00060438-exon-scaffold_341-1575043694:509835..514258Clytia hemisphaericaexon
TCONS_00060438-exon-scaffold_341-1510915933:515621..515697TCONS_00060438-exon-scaffold_341-1510915933:515621..515697Clytia hemisphaericaexon
TCONS_00060438-exon-scaffold_341-1510915933:515257..515434TCONS_00060438-exon-scaffold_341-1510915933:515257..515434Clytia hemisphaericaexon
TCONS_00060438-exon-scaffold_341-1510915933:514842..515025TCONS_00060438-exon-scaffold_341-1510915933:514842..515025Clytia hemisphaericaexon
TCONS_00060438-exon-scaffold_341-1510915933:514434..514624TCONS_00060438-exon-scaffold_341-1510915933:514434..514624Clytia hemisphaericaexon
TCONS_00060438-exon-scaffold_341-1510915933:509835..514258TCONS_00060438-exon-scaffold_341-1510915933:509835..514258Clytia hemisphaericaexon
TCONS_00060438-exon-scaffold_341-1491911889:515621..515697TCONS_00060438-exon-scaffold_341-1491911889:515621..515697Clytia hemisphaericaexon
TCONS_00060438-exon-scaffold_341-1491911889:515257..515434TCONS_00060438-exon-scaffold_341-1491911889:515257..515434Clytia hemisphaericaexon
TCONS_00060438-exon-scaffold_341-1491911889:514842..515025TCONS_00060438-exon-scaffold_341-1491911889:514842..515025Clytia hemisphaericaexon
TCONS_00060438-exon-scaffold_341-1491911889:514434..514624TCONS_00060438-exon-scaffold_341-1491911889:514434..514624Clytia hemisphaericaexon
TCONS_00060438-exon-scaffold_341-1491911889:509835..514258TCONS_00060438-exon-scaffold_341-1491911889:509835..514258Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_341supercontigscaffold_341:509835..515697 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.454716	0.356161	0.480736	0.282221	1.45771	1.12134	0.907782	0.922095	0.686809	0.801769	0.800177	0.632631	0.867237	0.940832	0.67147	0.633143	0.556202	0.48093	0.521924	0.730841	0.553236	0.463142	0.249539	0.306566	0.741464	1.1113	1.32307	0.934654	0.472351	0.425626
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00060438 vs. Swiss-Prot (Human)
Match: WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 5.077e-20
Identity = 68/205 (33.17%), Postives = 105/205 (51.22%), Query Frame = -1 
Query: 2586 FRQMYAKVGNLR-AMFNKPFLCLTATANRKTTRKIVKLVQLRNYKTERFSPEKPNVKISAQKLKITSDFSEVQSHMKPILDEFDLNGKCEKTIIYCHNIGRC----GEIFMLFPSKYRGKTVRVFHGKTPSHRRAEVMEEFTKAEGGECFIVIATSALGMGVNIRNIRHVIHVGLPKDVEAYIQEIGRAGRDGHLSTAMLFYRPA 3185
            FR  + K+G+L+ A+   P + LTATA+      IV+ + LRN +      ++PN+ +  ++ K  +   ++Q  +      ++  G    TIIYC +        GE+  L        +   +H       R ++   F + E  +C  VIAT A GMG+N  +IR VIH G PKD+E+Y QEIGRAGRDG  S+  + + PA
Sbjct:  680 FRDSFRKLGSLKTALPMVPIVALTATASSSIREDIVRCLNLRNPQITCTGFDRPNLYLEVRR-KTGNILQDLQPFLVKTSSHWEFEGP---TIIYCPSRKMTQQVTGELRKL------NLSCGTYHAGMSFSTRKDIHHRFVRDEI-QC--VIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPA 871
The following BLAST results are available for this feature:
BLAST of TCONS_00060438 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WRN5.077e-2033.17Werner syndrome ATP-dependent helicase OS=Homo sap... [more]
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