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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060435 ID=TCONS_00060435|Name=TCONS_00060435|organism=Clytia hemisphaerica|type=transcript|length=726bp
caTACAGGACCTTACAAAGGAGAAATGATGATGTCTGTACAATGGTATTA
TAAACCGACACAAACGATTTCAAAGGGGAACGATATCATCTGTGGAGACG
AGATGGAAGTCTTTGCATCTCGCCATAAAGACGATAACAGTGTAGCATGC
ATCATTGATCGATGTTATGTCATCACTCTGCCCCAATATAATAGATACAA
AGCACACAAGCAACGATGGGAAGAGAAAAGAAACCGGAAATTGGTCGTAG
TTCCGGAAGTAAAAAATCACCGGTCACGCCTTTTGCCAAGCCCGGACTTT
GATCCTTCCTTAGTTTATTTTTGTCGTTTTGGTTACGATTATCGGTCTGG
AAAATTGATCAAAAtttttagaaGTGCAAACTTCAAATCGAATTGTCTCG
GCTCTGACAAAAGTAAAAATGGTCAAGTTTGAGATCATTGGACAGCTCCT
TCAACATCTGTTTATTTCCCAAATGAAAGCTAAAGCAGCCAAAAGAAAAG
TCATGAAATTTGCAAAGAGTTTAGAGGGTTTTCAGTCTTCGTTCAGTCTT
CGTTCgtctttttaaaactttgggGGAAATTTCCGATTCCAGGTCTTGAT
CATAAAAATGTTGCaatattgtcacttttttgaTGAATGTCTTCTTTTTG
TCAACGNAAATTTGCAAAGAGTTTAGAGGGTTTTCAGTCTTCGTTCAGTC
TTCGTTCgtctttttaaaactttggg Run BLAST on NCBI protein sequence of TCONS_00060435-protein >TCONS_00060435-protein ID=TCONS_00060435-protein|Name=TCONS_00060435-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
HTGPYKGEMMMSVQWYYKPTQTISKGNDIICGDEMEVFASRHKDDNSVAC
IIDRCYVITLPQYNRYKAHKQRWEEKRNRKLVVVPEVKNHRSRLLPSPDF
DPSLVYFCRFGYDYRSGKLIKIFRSANFKSNCLGSDKSKNGQV Run BLAST on NCBI transcript from alignment at scaffold_341:461698..467997- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060435 ID=TCONS_00060435|Name=TCONS_00060435|organism=Clytia hemisphaerica|type=transcript|length=6300bp|location=Sequence derived from alignment at scaffold_341:461698..467997- (Clytia hemisphaerica)
CATACAGGACCTTACAAAGGAGAAATGATGATGTCTGTACAATGGTATTA
TAAACCGACACAAACGATTTCAAAGGGGAACGATATCATCTGTGGAGACG
AGGTTAGATCAGTTTATACTACACGTCTTTTTATAAGAACATCCAAAATT
TTTGAAGCCTTGGGATGTTCTTAACTTTTTGAGTTTCAAGCCTAAAGATG
TACTTAATGTTCTTATTTTTGCCATTTTTTTTGAGTATTTTTGTCAATTT
TCCTATTAAATTTAGTGTTCTAGCATCCGCAAAGGCTTAGAATTTTCTAA
CTTTTTCTTAAGACTTTGGCATTTAAGCCCAACGTTTTTATATAGTTTGT
TCTTATAAAAAAAACGTGTATTTATTCTTATTCTCCTTGACCAAACTTTT
ATATTTTAGGATTGATCTTTCCGAAAGGTTTTCAAATTTAAGCCACATTC
TAGTGTTATTAATTATCCAACAAGATTTCAAACATTTTCCAGTTATACAG
ACACTGTTACTTACATAGGTTGCTCAAACCTTATGTTATGGAGAGCAATC
ACTTACCTCACATAAAAGGGATGAAAGCAAAAGAAGCACTCTCTGCTTTT
AGTCTGAAAGTTATGTGTTATGGTCACGCTGTATATCATATTCATGATAT
TCATGATGTAAAGTTTTCTACGGAAAGACCCCGGCTTTTGCCAGTAGTGG
CAAATTAAAACTAGACAAAAATTGTATAGAATTTGCCACTACTGGTAAAA
ACCGGGGTCTTTCCGTAGAAAACATTACGTTATGAATATCATGAATTCTA
CATCGTTTTTACACGTAGTCTTAATTTTATGTTTACCAATACCACCCGCT
CATTGTTACAATAATCCGTCTCAAATATTTTTCAAAAACTTTAATTGTTT
TTAAGTTTGATTTGAACAATTGTCCAATATGCAGCTACAAGTAAGTCAAA
TAAAAGAAATTGCAAATGATACAAATTTTTTTAATAAAACGATTTTTCAA
AAAAAACATTGGGGCAGAAATAATATGTACAAAACAAACCTGAATTTGGA
ACGATTCAAATCTCATTCTCAGCAAATTCATCCTCGTAGTAGTCAAAATA
GGGTACTATAGGAAGCTTCAATCACCACAATTTTGCATTTTAAAATTACG
AACGACATGAGAAGAATATGAGACTATGATGTCAAAAATAAGAACAACAA
AGCCTAAAACAAAATACTGGTTCTTTCAAAAACAAAAAGTGTAATCAAAA
TGATCACGAAATGATATAACTTAACTGATTCTTCCTATGTCACTTTTAAC
CAATTGGCTCTTTTAAAAGTGATATGATTGCCTCTACGAATTCAGACGTT
TGCCGTCCCATGTTTTGTCAGATAGTCCCAAGTTAGAGCAGTTGACGGTA
AGTTAAGTGGTTTTAATAAACCTGTAAAACCGTTGTAGAAAAGAATCCAC
ACCATTTATCGGATGAAAAAAAGCCATTTTCCAGAAGGTTCGTAACCTTG
GTGTCGTTCCCAATCATCACATTCAAACCTGGAGTCTGTTTGGTGAAGAA
TAACATGTCCTTTTGCAAACTCGAATATCACGTGATTGTAATATAGGTGA
CCGTATCCAATATGTCCTATCCGAAGGTTCGCACAATTAGCCACTGACAT
CTTCGAGCTGTCATCCGGTAAGAACCGCACGTTATTGCACATTCCCGTTA
TAAAAGAGTTTTGCTCTTTGTTGATAAATCTAAAGATTTTGTCTCCGTAT
AAGATTGTGTGGAGAGTGCGTCCATGCCATGGTTTGTAACATTTGATTCG
TAGTTCAGTGTATCCGTGGTTGACGAACAAATTTCGGAGAAGATCATGGT
GGAGCAGGACATGGCCACTTTGGATGTTTTGGAGCTNATCCGTGGTTGAC
GAACAAATTTCGGAGAAGATCATGGTGGAGTAGGACATGGCCACTTTGGA
TGTTTTGGAGCTGAGATACTGTAGAAGGATTTTGGAGGATTGGATAGATA
TCTGAGGGGTCCTCAAATGTCATGTTTGCAACGGCCAACCAGCCGCCTGA
AAGTGAAGAAATGGCAGATCTATTTAATGTCGATTATTCTTTTTGATCTG
CTCTGTCAAATTTTCACTAAAATTAATTTTGCATCAGTTCTAAAGCCAGT
GAGAAATTGCCTAAATGTAAATGTAGTTGTCTTGTTGATGATAGCATTAC
GGACAACCTCACACTTCCCCACTTTTGTCTGAATAGATATTCATTTTTTT
TTTACAAATTTTGGTACCATGGCTAAATGATGGATGATGTACTTACCGCC
ATCTGTGGTTAAATCACAGAACGCTGTTGTAGTTTGTTTGTCACCATCTA
CGATTGCCAACTCGTAAATATCTGATTCACACTCAGGACAAACTTCTTTC
ACCTCTTTGCAAGATTGGAATGGTGGGCATTTCTAAAAAGAGAAAGAATC
TAAGATAAGTGAACCTTCCCTTTGCGCAAAGGACGTTGCACAAAGGAGAG
GAGGCGAACCTACCCTTTGCAAAGGGTATAGGCTCTAATCTAAAGCTGGG
TTCAAAGCGCTAAATAAATAACAAGTAAAAGTGTTTGGAAAAATGTCTAT
TCAGTGACTTGTTAGTTTACGATTTCAATGAAACCGAAGTTTAGTAATCA
TTAATAAATTTATCTAAAGTTAGAAGATTACATCATGCTCCTCAAACATA
ACTCCATCGCTTCCAGCATCATGTTCCCAACTTCTCATGCAGTGGCATTG
CTCTTTCTCCGGCACATAAAAACTTTTCTGCATTTTTCTTTGACATTTCA
ATGTACATTCGATTGGTGATCTTGCCGAAATAATGTTCGATTTGGTTGTC
GTGCCAACGTTTCCTTCTGTTTCTTCCTGTGTATACCATCTAGCGTAAAC
CAAAGCCATTTGTGTCAGAAAAATGCTTGAATACATTTTTGAAACAGTTT
GAAGCTATGTTACACTTCACGTCTGCTTATGATCCAGAAATTAAAACTTT
TAAAATGTTCAAAATGTTTTTTTTTAGTTCTAATATTTTTTTGAGGGAGG
ATATATACATTGGAAATTCAATTAGTATAACGTATTAATATATTACCTAT
TTTGGTCTAAATTAATTATGTATTTGTTTTCAGTCATGAATTTTTAAAAC
CTTCTATTTAGTTTGACCATATTTATATATTCCCCTGGCAAAGAATTAAC
TGCAGTATATATAAGAACATAAGGCTTCGATGGCCAAAATATTCAGAACA
AGATAAGAACATTTTAAGGCTTTGCGGACTCTAAAACACGCGAGAGAAAT
GCCCACAAAATCGTGAAAATATGAACATAAAGAACATAGGCTCGTAACTC
AAAAAGTTAAAAGAACATCCGAAGTCATCAAAAATTTTGGATGTACTTAA
AAAAAAAGTTAATCATTTCTTCTTATCCATTTCTGAAATATAATGCTCAT
GTAATTATGAAATAGTTCTTATAAAAAAGCTGTTTAAATTTATTCCGAGA
CTATTTAACCATTGTGTCAAAATTGTCAAAACGTTGCTCAGTGATGAAGC
AAACAGGAATTTATCATTCAAACCAGCAAAAAGATTAGATACAAAAAAGA
TCAGATTTGGAAAATTTTTTGTAATATTTGGTCAAAGATTACTCTTAAAT
CCTTTAAAGAAAAAAATCGTACTTTTTTACTTGTCCTTTAATTTTATTGA
TACTACTAATCTAGACTAGAATATTTCCTCAAAACTCTCCGGTCACTAAA
AAGCTTATCGAAGTAAAGAAGTCAAAATGTACTTGCTCCAAAAACCTTGA
CTCCATCAGATGATTTCCCCGTAAAATTTACCTAAGGTGATTTTCATCCT
GATATGGGATGAATATTATAAACTAACTTTTTAAAGGCAGTGAACAATCA
TGAATATAAACATAAGACCTGAGCCACATTCGCACTTCATGCAAAAGGGA
ATAACGTGCTTTTGAATGTTTTAGCTGAGCAAGTAGGTCAGAACTTCACA
TACGCCGCATTCCTACAAATTCTACATACCGTATTACTTGAAATAAACAC
CCGGGGTGTTTGTTAATTTTGAATTTTTTACGAGGGGCGTTTATTAGAGG
GGTCGTCTATTCGAAGTAATGCAGTAGGAGATTCGAAACCATATTGGATT
TATCCGTTAACTTTGTTTTTCATTCCGATGAATATTGACTTGTCTAGGAT
GAATATTAAACGAACTCAAAGTGAAAGATGGCACCAAAAGCTTCTGCCAA
TCATAAACATCAACATCTCGATTTTATGCAAAAGGGAATAAGGTTGTTTT
AAAATATTTAGGCTACACAAGCAGGTCATCAACATTCGCCGCATCCCTTT
TGAGAAGAGGATGGCACTGGCAGAATAGGCTGACTTGAACCTGAACTACA
TCATTGATTGAATTTACTTCAAATCAAAATAAATCATTTTTTTCTTTTCT
CGTCATAGATGGAAGTCTTTGCATCTCGCCATAAAGACGATAACAGTGTA
GCATGCATCATTGATCGATGTTATGTCATCACTCTGCCCCAATATAATAG
GTAATGTCCGTTTCTTTCATATCAAANTTGCATCTCGCCATAAAGACGAT
AACAGTGTAGCATGCATCATTGATCGATGTTATGTCATCACTCTGCCCCA
ATATAATAGGTAATGTTCGTTTCTTTCATATCAAAAGATTTGGTAGGTAA
CGCTCTACACTGATCTACATTTTCAATTGTTACAAACAGTTATAATGTTT
GACTCTATAAAGTTTCGAGCCCTCGCATTTTTTTTTATTCTGTAACCCGC
ATCTCGTAACTCTCATAAATTTTCGCTTACTTTTAAATCATCCACCTACC
AATCAAAATTAGAATACAAACTCCGCAATTCAAAATTTCAAACAGTTTTT
TTTTGTCTCTTTCAAGATACAAAGCACACAAGCAACGATGGGAAGAGAAA
AGAAACCGGAAATTGGTCGTAGTTCCGGAAGTAAAAAATCACCGGTCACG
CCTTTTGCCAAGCCCGGACTTTGATCCTTCCTTAGTTTATTTTTGTCGTT
TTGGTTACGATTATCGGTCTGGAAAATTGATCAAAAGTACGTATTATTGA
AACTTCTTTGAGGTATTAAAAATTTAAATTTTAGTTAGTTTTTTAAATTT
TAAAGTATAAACGGATCATTTTAAGCAGATGAGATGGAGTTTTTATAAGA
TACTTTAATAATTGGTTATTTGAATTGATAAAAATGACGCGTTCTTTAGA
AAAAGTAGCAAAATGGTTTTATTATTGGTTAACGACCAACCAAATCAAAT
AAGAGCTTGTAAAAACTCGTCCCGTTTTAAGAAAGTCTTACCTCCATTTC
TTTGGATCCACTGTCAAAACTTGAAATTCTTTAACACGTGCACTGTCAAA
CCCTTTTCAGAAATCGAAAAATTGTGGCCCTAATTTTTTCTTCAAATACC
TCCAAGTTGTGCACCAATCGACACATTTTCTGTTTGTGAATTTTGCACAT
TTTAATAACCAATTGACCCCCCCCTACAAAGAGCGTAGTCGTAGTCGGCA
GCAAATATATTAATATGTTTGGGAAAAAGAAAGCTAATTCTTTAGGAAGA
ATATAATTTTGCATACAGATTTTACTTTAGATCTTAAGAAAAGCCGTCAG
TTTTTTGAAATTCCCTCGTCCTGACATAGAGGGCTGCTCATTCNACCAAT
TCCCCCCCCCCCCCCTACAAAGAACGTATTCGTAGTCGGCAGCAAATATA
TTATTATGTTTGGGAAAAAGAAAGCTAATTCTTTAGGAAGAATATAATTT
TGCATACATATTTTACTTTAGATCTTAAGAAAAGCCGTCAGTTTTTTGAA
ATTCCCTCGTCCTGACATAGAGGGCTGCTCATTAATTCATTAACTCTTTC
TATATCGTAAAAATTGATGAAATCGATGTTTTTTTCAGTTTTTAGAAGTG
CAAACTTCAAATCGAATTGTCTCGGCTCTGACAAAAGTAAAAATGGTCAA
GTTTGAGATCATTGGACAGCTCCTTCAACATCTGTTTATTTCCCAAATGA
AAGCTAAAGCAGCCAAAAGAAAAGTCATGAAATTTGCAAAGAGTTTAGAG
GGTTTTCAGTCTTCGTTCAGTCTTCGTTCGTCTTTTTAAAACTTTGGGGG
AAATTTCCGATTCCAGGTCTTGATCATAAAAATGTTGCAATATTGTCACT
TTTTTGATGAATGTCTTCTTTTTGTCAACGNAAATTTGCAAAGAGTTTAG
AGGGTTTTCAGTCTTCGTTCAGTCTTCGTTCGTCTTTTTAAAACTTTGGG
Coding sequence (CDS) from alignment at scaffold_341:461698..467997- >TCONS_00060435 ID=TCONS_00060435|Name=TCONS_00060435|organism=Clytia hemisphaerica|type=CDS|length=1728bp|location=Sequence derived from alignment at scaffold_341:461698..467997- (Clytia hemisphaerica)
TTTTTAGAAGTGCAAACTTCAAATCGAATTGTCTCGGCTCTGACAAAAGT
AAAAATGGTCAAGTTTGAATACAAAGCACACAAGCAACGATGGGAAGAGA
AAAGAAACCGGAAATTGGTCGTAGTTCCGGAAGTAAAAAATCACCGGTCA
CGCCTTTTGCCAAGCCCGGACTTTGATCCTTCCTTAGTTTATTTTTGTCG
TTTTGGTTACGATTATCGGTCTGGAAAATTGATCAAAAATGGAAGTCTTT
GCATCTCGCCATAAAGACGATAACAGTGTAGCATGCATCATTGATCGATG
TTATGTCATCACTCTGCCCCAATATAATAGCATACAGGACCTTACAAAGG
AGAAATGATGATGTCTGTACAATGGTATTATAAACCGACACAAACGATTT
CAAAGGGGAACGATATCATCTGTGGAGACGAGTTTTTAGAAGTGCAAACT
TCAAATCGAATTGTCTCGGCTCTGACAAAAGTAAAAATGGTCAAGTTTGA
ATACAAAGCACACAAGCAACGATGGGAAGAGAAAAGAAACCGGAAATTGG
TCGTAGTTCCGGAAGTAAAAAATCACCGGTCACGCCTTTTGCCAAGCCCG
GACTTTGATCCTTCCTTAGTTTATTTTTGTCGTTTTGGTTACGATTATCG
GTCTGGAAAATTGATCAAAAATGGAAGTCTTTGCATCTCGCCATAAAGAC
GATAACAGTGTAGCATGCATCATTGATCGATGTTATGTCATCACTCTGCC
CCAATATAATAGCATACAGGACCTTACAAAGGAGAAATGATGATGTCTGT
ACAATGGTATTATAAACCGACACAAACGATTTCAAAGGGGAACGATATCA
TCTGTGGAGACGAGTTTTTAGAAGTGCAAACTTCAAATCGAATTGTCTCG
GCTCTGACAAAAGTAAAAATGGTCAAGTTTGAATACAAAGCACACAAGCA
ACGATGGGAAGAGAAAAGAAACCGGAAATTGGTCGTAGTTCCGGAAGTAA
AAAATCACCGGTCACGCCTTTTGCCAAGCCCGGACTTTGATCCTTCCTTA
GTTTATTTTTGTCGTTTTGGTTACGATTATCGGTCTGGAAAATTGATCAA
AAATGGAAGTCTTTGCATCTCGCCATAAAGACGATAACAGTGTAGCATGC
ATCATTGATCGATGTTATGTCATCACTCTGCCCCAATATAATAGCATACA
GGACCTTACAAAGGAGAAATGATGATGTCTGTACAATGGTATTATAAACC
GACACAAACGATTTCAAAGGGGAACGATATCATCTGTGGAGACGAGTTTT
TAGAAGTGCAAACTTCAAATCGAATTGTCTCGGCTCTGACAAAAGTAAAA
ATGGTCAAGTTTGAATACAAAGCACACAAGCAACGATGGGAAGAGAAAAG
AAACCGGAAATTGGTCGTAGTTCCGGAAGTAAAAAATCACCGGTCACGCC
TTTTGCCAAGCCCGGACTTTGATCCTTCCTTAGTTTATTTTTGTCGTTTT
GGTTACGATTATCGGTCTGGAAAATTGATCAAAAATGGAAGTCTTTGCAT
CTCGCCATAAAGACGATAACAGTGTAGCATGCATCATTGATCGATGTTAT
GTCATCACTCTGCCCCAATATAATAGCATACAGGACCTTACAAAGGAGAA
ATGATGATGTCTGTACAATGGTATTATAAACCGACACAAACGATTTCAAA
GGGGAACGATATCATCTGTGGAGACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060435-exon-scaffold_341-1575043694:467896..467997 | TCONS_00060435-exon-scaffold_341-1575043694:467896..467997 | Clytia hemisphaerica | exon |
| TCONS_00060435-exon-scaffold_341-1575043694:463448..463539 | TCONS_00060435-exon-scaffold_341-1575043694:463448..463539 | Clytia hemisphaerica | exon |
| TCONS_00060435-exon-scaffold_341-1575043694:462912..463081 | TCONS_00060435-exon-scaffold_341-1575043694:462912..463081 | Clytia hemisphaerica | exon |
| TCONS_00060435-exon-scaffold_341-1575043694:461698..462059 | TCONS_00060435-exon-scaffold_341-1575043694:461698..462059 | Clytia hemisphaerica | exon |
| TCONS_00060435-exon-scaffold_341-1510915933:467896..467997 | TCONS_00060435-exon-scaffold_341-1510915933:467896..467997 | Clytia hemisphaerica | exon |
| TCONS_00060435-exon-scaffold_341-1510915933:463448..463539 | TCONS_00060435-exon-scaffold_341-1510915933:463448..463539 | Clytia hemisphaerica | exon |
| TCONS_00060435-exon-scaffold_341-1510915933:462912..463081 | TCONS_00060435-exon-scaffold_341-1510915933:462912..463081 | Clytia hemisphaerica | exon |
| TCONS_00060435-exon-scaffold_341-1510915933:461698..462059 | TCONS_00060435-exon-scaffold_341-1510915933:461698..462059 | Clytia hemisphaerica | exon |
| TCONS_00060435-exon-scaffold_341-1491911889:467896..467997 | TCONS_00060435-exon-scaffold_341-1491911889:467896..467997 | Clytia hemisphaerica | exon |
| TCONS_00060435-exon-scaffold_341-1491911889:463448..463539 | TCONS_00060435-exon-scaffold_341-1491911889:463448..463539 | Clytia hemisphaerica | exon |
| TCONS_00060435-exon-scaffold_341-1491911889:462912..463081 | TCONS_00060435-exon-scaffold_341-1491911889:462912..463081 | Clytia hemisphaerica | exon |
| TCONS_00060435-exon-scaffold_341-1491911889:461698..462059 | TCONS_00060435-exon-scaffold_341-1491911889:461698..462059 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_341 | supercontig | scaffold_341:461698..467997 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001025 | BAH_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003682 | chromatin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003682 |
chromatin binding |
Blast
BLAST of TCONS_00060435 vs. Swiss-Prot (Human)
Match: BAHD1 (Bromo adjacent homology domain-containing 1 protein OS=Homo sapiens GN=BAHD1 PE=1 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 3.771e-22 Identity = 53/124 (42.74%), Postives = 78/124 (62.90%), Query Frame = 1
Query: 10 PYKGEMMMSVQWYYKPTQTISKGNDIICGDEM--EVFASRHKDDNSVACIIDRCYVITLPQYNRYKAH-KQRWEEKRNRKLVVVPEVKNHRS---RLLPSPDFDPSLVYFCRFGYDYRSGKLIK 363
P GE+MMS+ WYY+P + + G + + EVFASRH+D NSVACI ++CYV+T +Y R+ A K+R E +RK +VP ++ + R +P D DP LV+ CR YD+R G+++K
Sbjct: 656 PESGELMMSLLWYYRP-EHLQGGRSPSMHEPLQNEVFASRHQDQNSVACIEEKCYVLTFAEYCRFCAMAKRRGEGLPSRKTALVPPSADYSTPPHRTVPE-DTDPELVFLCRHVYDFRHGRILK 777
The following BLAST results are available for this feature:
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