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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060420 ID=TCONS_00060420|Name=TCONS_00060420|organism=Clytia hemisphaerica|type=transcript|length=2636bpRun BLAST on NCBI protein sequence of TCONS_00060420-protein >TCONS_00060420-protein ID=TCONS_00060420-protein|Name=TCONS_00060420-protein|organism=Clytia hemisphaerica|type=polypeptide|length=670bp MRNYIDRILLKINEGRDPAALGVLRFCYGLLMIIDIFDERGLSRLPIKHGRun BLAST on NCBI transcript from alignment at scaffold_341:354070..363092- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060420 ID=TCONS_00060420|Name=TCONS_00060420|organism=Clytia hemisphaerica|type=transcript|length=9023bp|location=Sequence derived from alignment at scaffold_341:354070..363092- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_341:354070..363092- >TCONS_00060420 ID=TCONS_00060420|Name=TCONS_00060420|organism=Clytia hemisphaerica|type=CDS|length=20130bp|location=Sequence derived from alignment at scaffold_341:354070..363092- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060420 vs. Swiss-Prot (Human)
Match: VKGC (Vitamin K-dependent gamma-carboxylase OS=Homo sapiens GN=GGCX PE=1 SV=2) HSP 1 Score: 490.345 bits (1261), Expect = 4.816e-160 Identity = 270/598 (45.15%), Postives = 384/598 (64.21%), Query Frame = 1
Query: 85 RILLKINEGRDPAALGVLRFCYGLLMIIDIFDERGLSRLPIKHGDP-SSCYFPLFDNMPRLSIEXXXXXXXXXXMSAFGIMIGMFFKLSCFCFMSCYWYIFFLDKTVWNNHXXXXXXXXXXXXXXNANYYWSIDGLIWPSIRNKQIPLWQYGVVRFQVFLLYFYAGLKKLDRDWMTGYSMVGLSREFVFDPFRSFLTNEQIDFYMVHCCGLMFDLVQGFMLFFDTTRPIGFFFGYNFHIMNAVMFNIGMFSYMCMAVIPIFCRPEWPKKIIKMLPSFLQKVLPMTEDSVDNKSCTLIEQXXXXXXXXXXRSWTWNNLFMNLLCLHYVAAQLFLPYSHFLTKGYNSWTQGLYGYSWDMMIHSWSTQHVVVKVTDQITNKEQYLRPGAFFPYGDSKNRIFSHPDMLKQYATCLADRVKGMDELGIQHPQITVDVWKSMNGRYQQRMLDPTVDLVTAEWDPFTHTKWMQPLLVELSSWRSTLKQIRNANFEVNNATEIVFVADFPGLSLENYIAPEI-KANVTVLKGEVIVQ-SEHDHNTTVKVNETLNLASDETHVIHTVTNDPSCYMYVYYNESWVDKTDEELLASDTEYQKKLESAKK 1869
R++ +N DPA+L V RF +G LM++DI ERGLS L K+ D C FPL D + L ++++YLVY ++ + A G+M+G+ +++SC F+ YWY+F LDKT WNNHSYLYGL++ L +AN+YWS+DGL+ RN +PLW Y V+R Q+F++YF AG+KKLD DW+ GYSM LSR ++F PF+ L+ E +VH GL+ DL GF+LFFD +R IG FF FH MN+ +F+IGMFSY+ +A P+FC PEWP+K++ P LQ++LP+ + SC +K R + L Y+ QLFLPYSHFLT+GYN+WT GLYGYSWDMM+HS S QHV + D T + YL PG F R H DMLKQYATCL+ + + + + PQI D+W S+N R+QQR+ DP VD+V A W PF T W+QPLL++LS WR+ L++I+++ ++N TE+VF+ADFPGL LEN+++ ++ ++ +L+GEV V+ N T++ E + L + E H ++T + PSCYMYVY N + + E+ LA E ++K+E+ +
Sbjct: 50 RLVTLLNRPTDPASLAVFRFLFGFLMVLDIPQERGLSSLDRKYLDGLDVCRFPLLDALRPLPLDWMYLVYTIMFLGALGMMLGLCYRISCVLFLLPYWYVFLLDKTSWNNHSYLYGLLAFQLTFMDANHYWSVDGLLNAHRRNAHVPLWNYAVLRGQIFIVYFIAGVKKLDADWVEGYSMEYLSRHWLFSPFKLLLSEELTSLLVVHWGGLLLDLSAGFLLFFDVSRSIGLFFVSYFHCMNSQLFSIGMFSYVMLASSPLFCSPEWPRKLVSYCPRRLQQLLPLKAAPQPSVSCVYKRSRGKSGQKPGLR-----HQLGAAFTLLYLLEQLFLPYSHFLTQGYNNWTNGLYGYSWDMMVHSRSHQHVKITYRDGRTGELGYLNPGVF----TQSRRWKDHADMLKQYATCLS---RLLPKYNVTEPQIYFDIWVSINDRFQQRIFDPRVDIVQAAWSPFQRTSWVQPLLMDLSPWRAKLQEIKSS---LDNHTEVVFIADFPGLHLENFVSEDLGNTSIQLLQGEVTVELVAEQKNQTLREGEKMQLPAGEYHKVYTTSPSPSCYMYVYVNTT--ELALEQDLAYLQELKEKVENGSE 630 The following BLAST results are available for this feature:
BLAST of TCONS_00060420 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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