TCONS_00060409 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060409
Unique NameTCONS_00060409
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1220

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060409 ID=TCONS_00060409|Name=TCONS_00060409|organism=Clytia hemisphaerica|type=transcript|length=1220bp
GAAGTGATTTATCATTAAATCAGGAGCAAAGTATACCCCTGGGATTCCTG
ATATGGTTCCCCAAATTCGTGGAAAGATTATTGAGAGAACTATTCATACT
TGCAATGAACTCACGAAGTGCTCTACACAGGCAGAACATCTTGCTACTAA
TTAATGGAATCGTATGGTACTTAAAGAGGGACTATTTCAAAATGTCGCAG
CAAGGAAGATACAAAAGCTCATCTTGCGATGAAATATATCCTGAAGCATT
CACTTCAGAATACATTTACTCTGTAACACCGGTTACAGGGTGCTTGTATT
CTGCAATAATGTTTTCAGGATATTCGCAATCTTTGTTTGGGAAACTGGGC
AAAGGGTTCGATGTGGGATACAACCTATCGAACGAGAAGAAACTTCAATA
TAAGAGATATAGTGAATGCAGCAAAGATTTACTTTTACAATGGCATACAA
AAATGaTATTAACATTGGTGATTTCAACCTACTtaattatggaattttgg
aAGACCAATTCAGTTATCTTTCCAACCAATATTCTTCATCGGATTTGAGT
TGTCTAAATTCAACTCAAAGATTTGATGAAAATCCAGGACAATGTCTGAC
AAATAGTCAGGTGAATAATTCGGAACAAAGTGTATCGTTCCAATCAGCGC
CTCAATCCCATCAGAATGGATACAACAACTTAACAGTTAATGTTGTTAAA
AATCAAGCTCCTTcgtgtagtttagtttttcctcaAACTCAACAGACTTA
TTGTGACAATGTTGTAGGACTTAATCATATAAATTTTCAGGCGACGGAAA
ACGAAATATTTCCTGATTTCGAGTACAGTATTCCTGATATATATAATCAA
GAGTTTAGCCGATCAGATTCAAGTATTTCGGGATTGATCTCAGCCCAGCA
GATAAGCAATCAGACGACAATATGTGAACCATTTCAACAAAATAACGATT
ACCAATCacaacaaaataattttcaacaACAATCTGGCACTATCAATCAG
CTCTCACGTGCAGCGAATGGCAGTGAAGCGTATCATCGCCAAACAAGAAC
ATATAACGCTCAATCAATTATCAACACGCAGTTCTTAAGGGGAGGACAGT
TCTTCGAGAACTCAACTGGAAATGAAAACATCCAATGCGACCAGCCAACT
CCCTACCAGCAAGGACAAGAAAggTTTGATACGAATGAGCGGGCTCGCGT
ACCAGAGACTTTCTTTGATC
Run BLAST on NCBI

protein sequence of TCONS_00060409-protein

>TCONS_00060409-protein ID=TCONS_00060409-protein|Name=TCONS_00060409-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
MQQRFTFTMAYKNDINIGDFNLLNYGILEDQFSYLSNQYSSSDLSCLNST
QRFDENPGQCLTNSQVNNSEQSVSFQSAPQSHQNGYNNLTVNVVKNQAPS
CSLVFPQTQQTYCDNVVGLNHINFQATENEIFPDFEYSIPDIYNQEFSRS
DSSISGLISAQQISNQTTICEPFQQNNDYQSQQNNFQQQSGTINQLSRAA
NGSEAYHRQTRTYNAQSIINTQFLRGGQFFENSTGNENIQCDQPTPYQQG
QERFDTNERARVPETFFD
Run BLAST on NCBI

transcript from alignment at scaffold_341:76917..79173-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060409 ID=TCONS_00060409|Name=TCONS_00060409|organism=Clytia hemisphaerica|type=transcript|length=2257bp|location=Sequence derived from alignment at scaffold_341:76917..79173- (Clytia hemisphaerica)
GAAGTGATTTATCATTAAATCAGGAGCAAAGTATACCCCTGGGATTCCTG
ATATGGTTCCCCAAATTCGTGGAAAGATTATTGAGAGAACTATTCATACT
TGCAATGAACTCACGAAGTGCTCTACACAGGCAGAACATCTTGCTACTAA
TTAATGGAATCGTATGGTACTTAAAGAGGGACTATTTCAAAATGTCGCAG
CAAGGAAGATACAAAAGCTCATCTTGCGATGAAATATATCCTGAAGCATT
CACTTCAGAATACATTTACTCTGTAACACCGGTTACAGGGTGCTTGTATT
CTGCAATAATGTTTTCAGGATATTCGCAATCTTTGTTTGGGAAACTGGGC
AAAGGGTTCGATGTGGGATACAACCTATCGAACGAGAAGAAACTTCAATA
TAAGAGATATAGTGAATGCAGCAAAGATTTACTTTTACAATGGCATACAA
AAATGGTAAGAGCATTTATTTCGTTATTATGTAAAACATTTTTTCCATCT
CCACTGAAATTTATGACTTTAAAACAATTAAATTTCAATCCGCAGCTTCA
GTCCGTTGTTTTTACCTCCAATGACTAAAAAATCCTACCGCTTCTGTGAA
AAGGGGGTGTTAAGCATATTCCTACTCTTAGGTACCTAATAGCCGTCCAC
CCCGCTATTTAATTTTTCGAAAATTTTCCACCCAGGACATTCTTATTCCA
ACCCCCCCCCGCTTATTAATTTTTGGGAAAATATTTTTGAAAGTTCCTTC
TTTTGTCCTAATTTGCTATCAGCCTCCTTTTTTAAAAATTTTCCACCTGG
GACATTTTTATTCCAACCCTTCCCGCTAATTAGGTTTTGAGGTTTTTTCC
AACCCCCCCCCCGCTTATTCTAACCCCCCGGCTATTAGGTACCCGAGAGT
ATTTAAGACAATGTTGATCATTTTAGAAGTGTCATAGAGCGTTACTTTTA
AAAACTAATATATTTTTTTCATCTGTTTCTTTTTTATTAGATATTAACAT
TGGTGATTTCAACCTACTTAATTATGGAATTTTGGAAGACCAATTCAGTT
ATCTTTCCAACCAATATTCTTCATCGGATTTGAGTTGTCTAAATTCAACT
CAAAGATTTGATGAAAATCCAGGACAATGTCTGACAAATAGTCAGGTGAA
TAATTCGGAACAAAGTGTATCGTTCCAATCAGCGCCTCAATCCCATCAGA
ATGGATACAACAACTTAACAGTTAATGTTGTTAAAAATCAAGCTCCTTCG
TGTAGTTTAGTTTTTCCTCAAACTCAACAGACTTATTGTGACAATGTTGT
AGGACTTAATCATATAAATTTTCAGGCGACGGAAAACGAAATATTTCCTG
ATTTCGAGTACAGTATTCCTGATATATATAATCAAGAGTTTAGCCGATCA
GATTCAAGTATTTCGGGATTGATCTCAGCCCAGCAGATAAGCAATCAGAC
GACAATATGTGAACCATTTCAACAAAATAACGATTACCAATCACAACAAA
ATAATTTTCAACAACAATCTGGCACTATCAATCAGCTCTCACGTGCAGCG
AATGGCAGTGAAGCGTATCATCGCCAAACAAGAACATATAACGCTCAATC
AATTATCAACACGCAGTTCTTAAGGGGAGGACAGTTCTTCGAGAACTCAA
CTGGAAATGAAAACATCCAATGCGACCAGCCAACTCCCTACCAGCAAGGA
CAAGAAAGTAAACGTTGATATTTCACTTTTCGGTCTCACTTTTTCTTCTT
TTTCTCGGTTTCGTGACCAATCTTTCTTTCCCAATATTTACTGATTTTTC
AAAGCAAGTTATCGTATTACTTCAAATAGACGCCCCGTGCGTTTATTGAT
TTTTTTTAGATTTTATAAGGGCGTTTTTTCAAGGGGCCGCTTACTAATTT
GTAACCAAAGTCACTTTAGTAAAGCGAATGGGAACCTCATTTATCGCCTT
TTCATTCTTATTTGAGTAGAAATGTGTTAAATTGAAGATCAAAATCAGTT
CATACGAGTAAGTTTCCCCAAAATCATACTTCCTTACAGCTACTTGTTTA
AACGCTTGCTTTCCTAGGGGAAGACGTTTATTCGAAGAGAGATTTTAAAA
GAAGAATAAGGGTTTATTTGAAGTAATACGGTATTTTAAAATCACTTTAA
TAGTACATCAAAATAACTCTGGAACATGCTAAAAATCTAACGATTCTTTT
ATTTTCAAGGGTTTGATACGAATGAGCGGGCTCGCGTACCAGAGACTTTC
TTTGATC

Coding sequence (CDS) from alignment at scaffold_341:76917..79173-

>TCONS_00060409 ID=TCONS_00060409|Name=TCONS_00060409|organism=Clytia hemisphaerica|type=CDS|length=2412bp|location=Sequence derived from alignment at scaffold_341:76917..79173- (Clytia hemisphaerica)
GGTTTGATACGAATGAGCGGGCTCGCGTACCAGAGACTTTCTTTGATATA
TTAACATTGGTGATTTCAACCTACTTAATTATGGAATTTTGGAAGACCAA
TTCAGTTATCTTTCCAACCAATATTCTTCATCGGATTTGAGTTGTCTAAA
TTCAACTCAAAGATTTGATGAAAATCCAGGACAATGTCTGACAAATAGTC
AGGTGAATAATTCGGAACAAAGTGTATCGTTCCAATCAGCGCCTCAATCC
CATCAGAATGGATACAACAACTTAACAGTTAATGTTGTTAAAAATCAAGC
TCCTTCGTGTAGTTTAGTTTTTCCTCAAACTCAACAGACTTATTGTGACA
ATGTTGTAGGACTTAATCATATAAATTTTCAGGCGACGGAAAACGAAATA
TTTCCTGATTTCGAGTACAGTATTCCTGATATATATAATCAAGAGTTTAG
CCGATCAGATTCAAGTATTTCGGGATTGATCTCAGCCCAGCAGATAAGCA
ATCAGACGACAATATGTGAACCATTTCAACAAAATAACGATTACCAATCA
CAACAAAATAATTTTCAACAACAATCTGGCACTATCAATCAGCTCTCACG
TGCAGCGAATGGCAGTGAAGCGTATCATCGCCAAACAAGAACATATAACG
CTCAATCAATTATCAACACGCAGTTCTTAAGGGGAGGACAGTTCTTCGAG
AACTCAACTGGAAATGAAAACATCCAATGCGACCAGCCAACTCCCTACCA
GCAAGGACAAGAAAATGCAGCAAAGATTTACTTTTACAATGGCATACAAA
AATGGGTTTGATACGAATGAGCGGGCTCGCGTACCAGAGACTTTCTTTGA
TATATTAACATTGGTGATTTCAACCTACTTAATTATGGAATTTTGGAAGA
CCAATTCAGTTATCTTTCCAACCAATATTCTTCATCGGATTTGAGTTGTC
TAAATTCAACTCAAAGATTTGATGAAAATCCAGGACAATGTCTGACAAAT
AGTCAGGTGAATAATTCGGAACAAAGTGTATCGTTCCAATCAGCGCCTCA
ATCCCATCAGAATGGATACAACAACTTAACAGTTAATGTTGTTAAAAATC
AAGCTCCTTCGTGTAGTTTAGTTTTTCCTCAAACTCAACAGACTTATTGT
GACAATGTTGTAGGACTTAATCATATAAATTTTCAGGCGACGGAAAACGA
AATATTTCCTGATTTCGAGTACAGTATTCCTGATATATATAATCAAGAGT
TTAGCCGATCAGATTCAAGTATTTCGGGATTGATCTCAGCCCAGCAGATA
AGCAATCAGACGACAATATGTGAACCATTTCAACAAAATAACGATTACCA
ATCACAACAAAATAATTTTCAACAACAATCTGGCACTATCAATCAGCTCT
CACGTGCAGCGAATGGCAGTGAAGCGTATCATCGCCAAACAAGAACATAT
AACGCTCAATCAATTATCAACACGCAGTTCTTAAGGGGAGGACAGTTCTT
CGAGAACTCAACTGGAAATGAAAACATCCAATGCGACCAGCCAACTCCCT
ACCAGCAAGGACAAGAAAATGCAGCAAAGATTTACTTTTACAATGGCATA
CAAAAATGGGTTTGATACGAATGAGCGGGCTCGCGTACCAGAGACTTTCT
TTGATATATTAACATTGGTGATTTCAACCTACTTAATTATGGAATTTTGG
AAGACCAATTCAGTTATCTTTCCAACCAATATTCTTCATCGGATTTGAGT
TGTCTAAATTCAACTCAAAGATTTGATGAAAATCCAGGACAATGTCTGAC
AAATAGTCAGGTGAATAATTCGGAACAAAGTGTATCGTTCCAATCAGCGC
CTCAATCCCATCAGAATGGATACAACAACTTAACAGTTAATGTTGTTAAA
AATCAAGCTCCTTCGTGTAGTTTAGTTTTTCCTCAAACTCAACAGACTTA
TTGTGACAATGTTGTAGGACTTAATCATATAAATTTTCAGGCGACGGAAA
ACGAAATATTTCCTGATTTCGAGTACAGTATTCCTGATATATATAATCAA
GAGTTTAGCCGATCAGATTCAAGTATTTCGGGATTGATCTCAGCCCAGCA
GATAAGCAATCAGACGACAATATGTGAACCATTTCAACAAAATAACGATT
ACCAATCACAACAAAATAATTTTCAACAACAATCTGGCACTATCAATCAG
CTCTCACGTGCAGCGAATGGCAGTGAAGCGTATCATCGCCAAACAAGAAC
ATATAACGCTCAATCAATTATCAACACGCAGTTCTTAAGGGGAGGACAGT
TCTTCGAGAACTCAACTGGAAATGAAAACATCCAATGCGACCAGCCAACT
CCCTACCAGCAAGGACAAGAAAATGCAGCAAAGATTTACTTTTACAATGG
CATACAAAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037996XLOC_037996Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060409-proteinTCONS_00060409-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060409-exon-scaffold_341-1575043694:78719..79173TCONS_00060409-exon-scaffold_341-1575043694:78719..79173Clytia hemisphaericaexon
TCONS_00060409-exon-scaffold_341-1575043694:77467..78183TCONS_00060409-exon-scaffold_341-1575043694:77467..78183Clytia hemisphaericaexon
TCONS_00060409-exon-scaffold_341-1575043694:76917..76964TCONS_00060409-exon-scaffold_341-1575043694:76917..76964Clytia hemisphaericaexon
TCONS_00060409-exon-scaffold_341-1510915933:78719..79173TCONS_00060409-exon-scaffold_341-1510915933:78719..79173Clytia hemisphaericaexon
TCONS_00060409-exon-scaffold_341-1510915933:77467..78183TCONS_00060409-exon-scaffold_341-1510915933:77467..78183Clytia hemisphaericaexon
TCONS_00060409-exon-scaffold_341-1510915933:76917..76964TCONS_00060409-exon-scaffold_341-1510915933:76917..76964Clytia hemisphaericaexon
TCONS_00060409-exon-scaffold_341-1491911889:78719..79173TCONS_00060409-exon-scaffold_341-1491911889:78719..79173Clytia hemisphaericaexon
TCONS_00060409-exon-scaffold_341-1491911889:77467..78183TCONS_00060409-exon-scaffold_341-1491911889:77467..78183Clytia hemisphaericaexon
TCONS_00060409-exon-scaffold_341-1491911889:76917..76964TCONS_00060409-exon-scaffold_341-1491911889:76917..76964Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_341supercontigscaffold_341:76917..79173 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0350917	0	0.0397327	0.0388722	0.473232	0.299163	0.496276	1.05593	0.354854	0.879087	0.924368	0.420676	1.14358	0.751352	4.76237	5.15352	1.81768	1.67406	0.932582	1.21009	1.08572	1.73767	0.603532	0.804758	0.753529	1.10964	0.481177	0.154058	5.14128	3.76988
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060409 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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