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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060407 ID=TCONS_00060407|Name=TCONS_00060407|organism=Clytia hemisphaerica|type=transcript|length=321bp
CCAGGCATCCAAACTCGCAGGAGATAATTACAATGTAACTGACGTCATGA
ATTCGTGGATTTTCCAAATGAACTTCCCAGAATTGAGAATTAAATCATTA
AACAATGGACAGTTCAAAGTTGAtcaagttcgatttttgagagatAAAAA
TCCTGATTACAGCAAAGAGAAATTTAACTCTTCTTATGGATACAAATGGC
ATATTCCTTTCAAATACACAACGTTGAAACTTGATGACGGTGCAAAAAGT
GTCGAAGTTATTAATGCCACTACACTAACCTGGATGAAATATGAAAATAT
CACTGTGGACACAGGATCAAC Run BLAST on NCBI transcript from alignment at scaffold_341:504380..505912+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060407 ID=TCONS_00060407|Name=TCONS_00060407|organism=Clytia hemisphaerica|type=transcript|length=1533bp|location=Sequence derived from alignment at scaffold_341:504380..505912+ (Clytia hemisphaerica)
CCAGGCATCCAAACTCGCAGGAGATAATTACAATGTAACTGACGTCATGA
ATTCGTGGATTTTCCAAATGAACTTCCCAGAATTGAGAATTAAATCATTA
AACAATGGACAGTTCAAAGTTGAtcaagttcgatttttgagagatAAAAA
TCCTGATTACAGCAAAGAGAAATTTAACTCTTCTTATGGGTGAGACGTGT
TAACTATTTTTCGGTTTTTTAATATTCTTAATTTAATTGTACGATAAGAT
ACCTTAAGGGATCTATTCCTaacgggaactaattttcacagtCAGAAAAA
ACAAACTGAACAAATGTTgcatttcgcgggaattaattttcgcgattttg
ctCTATTTTGCACACAATTCTCCCATTTTcttagggatttttcaaatttt
ttgatgaaaaattgccaaatttttaATTCACCATGAGTTCGACAAACCGC
AATAACCGAAAATTCGTTCAGGTACTATGTAGCCTCTCAAAAAAGCTAAG
AAAGAAAGCTTGCTTGTTTTTCCTTCAAGTTTTCGTTGTTATCAATTGAA
ATGAATTCATACTTTGGCCATGTTCAGACATTACGGTTTCGTATCGTTCC
GGTATGGTTTTTGTTACGGttcgagagtgttcatatttGTAGAAAGAAAA
TAGAGCAGTTTCGGAGCAGTTCTGtcccgatgaaaatagtggagcgaagc
cgtttcgatctgttttactttgtaacgtcttctttttggACGTATCGAAT
TTTGACGTTACAACACtagtttcggaaccgtttcgtttcggaacaaTACG
GAACCGTAAgttctgaacatggtcttagagaACTATAAAAGATCTATTTC
ACTTTTTGGAATTGCATGCCAATAATCATAGATTCAGCTTAGgtaaatgg
gctgttccattaaatttccatacaggggggtggacgaacatttttAACGC
AAAAAAAGATTGATTCTTAGAAATGTGTGGATGCCCCCTGGAAAGtgaca
aaactttcaaaagaatCCTTTGGAAAATTCATTTCCTACCTTAAAAGTGA
AGATGGaatggacgaactaaaatcagtcttttattccctggaagttttaa
aataacattttaaccccggaaaaatgaaacaatactCTTTTATACGTCCG
GGAAGTTCTTCTccgattaccccctggaaatgctCGTCCACctcccccct
gtatggatataaaatgaaatggccCGATAGATTCTGTACTTTATCATGGC
GTTTTCTTCAAATTACAGATACAAATGGCATATTCCTTTCAAATACACAA
CGTTGAAACTTGATGACGGTGCAAAAAGTGTCGAAGTTATTAATGCCACT
ACACTAACCTGGATGAAATATGAAAATAGTGAGTATATCGAGCCTGGTTA
AGATGTTACTAGCCGTTTATCATTTACAATGTGGGGACATCGATGTAATA
GCTCTTTCatgtaatttttataaaaacataaggctttcAATTATTTCACT
TATTTTTCCAGTCACTGTGGACACAGGATCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060407-exon-scaffold_341-1491911889:504380..504568 | TCONS_00060407-exon-scaffold_341-1491911889:504380..504568 | Clytia hemisphaerica | exon |
| TCONS_00060407-exon-scaffold_341-1510915933:504380..504568 | TCONS_00060407-exon-scaffold_341-1510915933:504380..504568 | Clytia hemisphaerica | exon |
| TCONS_00060407-exon-scaffold_341-1575043694:504380..504568 | TCONS_00060407-exon-scaffold_341-1575043694:504380..504568 | Clytia hemisphaerica | exon |
| TCONS_00060407-exon-scaffold_341-1491911889:505648..505757 | TCONS_00060407-exon-scaffold_341-1491911889:505648..505757 | Clytia hemisphaerica | exon |
| TCONS_00060407-exon-scaffold_341-1510915933:505648..505757 | TCONS_00060407-exon-scaffold_341-1510915933:505648..505757 | Clytia hemisphaerica | exon |
| TCONS_00060407-exon-scaffold_341-1575043694:505648..505757 | TCONS_00060407-exon-scaffold_341-1575043694:505648..505757 | Clytia hemisphaerica | exon |
| TCONS_00060407-exon-scaffold_341-1491911889:505891..505912 | TCONS_00060407-exon-scaffold_341-1491911889:505891..505912 | Clytia hemisphaerica | exon |
| TCONS_00060407-exon-scaffold_341-1510915933:505891..505912 | TCONS_00060407-exon-scaffold_341-1510915933:505891..505912 | Clytia hemisphaerica | exon |
| TCONS_00060407-exon-scaffold_341-1575043694:505891..505912 | TCONS_00060407-exon-scaffold_341-1575043694:505891..505912 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_341 | supercontig | scaffold_341:504380..505912 + |
Blast
The following BLAST results are available for this feature:
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