TCONS_00060405 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060405
Unique NameTCONS_00060405
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1084

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060405 ID=TCONS_00060405|Name=TCONS_00060405|organism=Clytia hemisphaerica|type=transcript|length=1084bp
ttaaaaaggaaatcATCTATGTTGATCCAAATCTGAAATACAAACAAGAT
TTTGTAAAATCATGGGAAATCCATCAATTAAGACACAAATCTATACATTT
ATGAGCTGACATTGTTGCAAAGTGTGTTTTCATTATGgcagaaaaatatg
aaattgaagagaattcttcatTGACATTTCAAGACTCTCCACGTCACAAG
AAAGGATTTTTTATTAGCAAAGGCCAACTTATAGTCTGCCTTTTAGCTGT
GATATGCTTGATAATAATTATAGCTGTACTGTCTGCTACATTCAGTTGGT
ATGCAGCCAAGAATGATAATACTAATGGGAAGTCAGatatGAAGAAAGGC
GGCTCAAATAAAACTACCATGGCTCCAACGACTGTCCCAACAACACCAGG
AACAGAAGTTTATCATAATATTCGTTTACCCAAATACATTAGACCCATTC
ATTATGTAGTGGCTTTGGAAATTGATATGCAGCTAGAGTTTGTAGATGGT
ACAACAAACATCAAGACCGAAGTCTCAAAACGCTCAAAATATATCATGGT
GCACGCTATGAAATTTAATAATGTTAAAGTCgttgtaaaaaaatttgata
ctcAAGAAAAATACCCCCTTGAGAAAGAGCATGGTGATAACGGCGGCTTT
TTATAcaaacaaaatctttattttgttattgaaGCTCATGATTATTTTGA
AGTTGGAAATTATTCTTTGGAATTCAAATTCGATTATAAATTGCGAAAAG
ATTTGGCTGGATTTTATTTGTCTACTTACAATAATACAAAGGGTCAAATT
GTgAAAGTCGCCGCTACGCAATTTGAGCCTGTGGATGCCCGTTCAgcatt
cccatgttttgacgaACCAGCTATGAAAGCGACTTTTGATATCTCAATGA
AACGAGATAAAAGTTATCTTGCATTGAGTAACATGCCGGTCATCAGAACT
GAAGCTGATGGAGATGAAGTGACCAATTATTTCCAAACAACTCCCATTGT
ATCCACTTACTTGATCGTCTTTGTGATTTGTGATTTCGAAAAAAGAATGG
TTGTTGCAAATACTAAGGTTCCTACTAAcgtaag
Run BLAST on NCBI

transcript from alignment at scaffold_341:489979..492654+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060405 ID=TCONS_00060405|Name=TCONS_00060405|organism=Clytia hemisphaerica|type=transcript|length=2676bp|location=Sequence derived from alignment at scaffold_341:489979..492654+ (Clytia hemisphaerica)
ttaaaaaggaaatcATCTATGTTGATCCAAATCTGAAATACAAACAAGAT
TTTGTAAAATCATGGGAAATCCATCAATTAAGACACAAATCTATACATTT
ATGAGCTGACATTGTTGCAAAGTGTGTTTTCATTATGgcagaaaaatatg
aaattgaagagaattcttcatTGACATTTCAAGACTCTCCACGTCACAAG
AAAGGATTTTTTATTAGCAAAGGCCAACTTATAGTCTGCCTTTTAGCTGT
GATATGCTTGATAATAATTATAGCTGTACTGTCTGCTACATTCAGTTGGT
ATGCAGCCAAGAATGATAATACTAATGGGAAGTCAGGTACTGTATAACTA
GTTTCATAAGACctgtattttttttatttttttggtctATGAACATTTGC
AGATGatctttcatttcaaatttaatcATCATTTGCTTATaatgattaaa
tttttaaaacaattgcgtgattgtgtgaatgggaaagctttgcgtgaaca
aaaatttcgtaaattgtgaaaaaacattgtgtgaatgtgtgaatttggga
aaaaaatttgcttgattgcatgaattgaaggtccgctaggggggggggct
cataaAGGAAGCATGTTAGATAGAATTATGGTCATACCGTAAAATCGATA
ATCAATTAAATAGTTTCTGTTGGGTAATGTGTCAAAGTTACGGTGAAAgg
aattaaattaaagagaaaatgtttttagctATAATAACTATTTTCCTTCC
TtaataaaataaagttttgtgAAACAATTTCTCATTCATTGAAAATCAGA
CAGGGTCTTTGCAAATAacaattttatctcatttttgcAAATAACAATTT
AATctcatttttgcaaaaaacaatGTTTTCTGTTATCCATAAAGTACAAA
AGTATGCCTTAACTCATTTAAAGTCATGATTTAAAGAATTTCTATTTACA
ATACTATCTGTATAAATAATTtgttctattttgaaaatatttgttttaac
GCACATTTCAATGTCTAAAAGTGTTAAAAACCAGACTCCAAGTGATTTAT
GCTAATAttgttataaaaatataaataataagATTTATGCATCCATTACA
ATTTCCAATTTCAATTTCtatatccaattttttttcttttcagatatGAA
GAAAGGCGGCTCAAATAAAACTACCATGGCTCCAACGACTGTCCCAACAA
CACCAGGAACAGAAGTTTATCATAATATTCGTTTACCCAAATACATTAGA
CCCATTCATTATGTAGTGGGTAAGTTTTTTCATTAAAGTGTCAAAATGTG
CTCCAATGAAAAATTTGCTGGAATACTCTCTTTACAGATTCTGTTATTAG
tttaagaatttaaaatttcaagctTCTTGCCATCAATTACATTCATACAT
TAGGACTTTTCCGTAACTTACTTTTAATTCTCTCTCAGCTTTGGAAATTG
ATATGCAGCTAGAGTTTGTAGATGGTACAACAAACATCAAGACCGAAGTC
TCAAAACGCTCAAAATATATCATGGTGCACGCTATGAAATTTAATAATGT
TAAAGTCgttgtaaaaaaatttgatactcAAGAAAAATACCCCCTTGAGA
AAGAGCATGGTGATAACGGCGGCTTTTTATAcaaacaaaatctttatttt
gttattgaaGCTCATGATTATTTTGAAGTTGGAAATTATTCTTTGGAATT
CAAATTCGATTATAAATTGCGAAAAGATTTGGCTGGATTTTATTTGTCTA
CTTACAATAATACAAAGGGTCAAATTGTGTAAgaaatcattttatttgaa
aatgttgttataaaaaagaaTCTTATTTCCAATCAAGCTATTATTATAAT
AACAATTAcaacttaaaataattttcagataAGATTGATAGAGAGTAAGG
CACTATAAAAGGTAGCTAAAGTAATTTACCAGGAAATTTTTGTTCACCTT
GACCAATTAAGTATGGCACTCCGCAACCTCAAATTTTTGCTCCTACTGGT
GGTACAGGACTGAAAAAAATTCAGCAATTTCATATGATACCAGTGGGACT
TTATGAAAACTTCTCTGTGAAAACTATAAGTTGAAGGTTAAGTGTTGCTA
CGATAGTGCTCTTACCAACAAAAGAAGtatgataaaatttcaaaagaaaa
acacatAATTTGCTATACacaaggattttttaagcacttTGTGCTGGAGC
CGTTTTTGTAAACTTAGATTGAATTTCTAATATGCCTGAAAGAGAATTTC
CTCAGCAAAACTGTACATTTAGGAAGCTGGGGAACTTGTGGGTGTTCAGA
GGGCAAAGCTCCCAAAAATTCTTGAATATATAGATAATAATTAGTTATTG
TTGCTCATAAACAACTCACTgaggaatttctttttttttcacaggAAAGT
CGCCGCTACGCAATTTGAGCCTGTGGATGCCCGTTCAgcattcccatgtt
ttgacgaACCAGCTATGAAAGCGACTTTTGATATCTCAATGAAACGAGAT
AAAAGTTATCTTGCATTGAGTAACATGCCGGTCATCAGAACTGAAGCTGA
TGGAGATGAAGTGACCAATTATTTCCAAACAACTCCCATTGTATCCACTT
ACTTGATCGTCTTTGTGATTTGTGATTTCGAAAAAAGAATGGTTGTTGCA
AATACTAAGGTTCCTACTAAcgtaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037994XLOC_037994Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060405-exon-scaffold_341-1491911889:489979..490314TCONS_00060405-exon-scaffold_341-1491911889:489979..490314Clytia hemisphaericaexon
TCONS_00060405-exon-scaffold_341-1510915933:489979..490314TCONS_00060405-exon-scaffold_341-1510915933:489979..490314Clytia hemisphaericaexon
TCONS_00060405-exon-scaffold_341-1575043694:489979..490314TCONS_00060405-exon-scaffold_341-1575043694:489979..490314Clytia hemisphaericaexon
TCONS_00060405-exon-scaffold_341-1491911889:491122..491247TCONS_00060405-exon-scaffold_341-1491911889:491122..491247Clytia hemisphaericaexon
TCONS_00060405-exon-scaffold_341-1510915933:491122..491247TCONS_00060405-exon-scaffold_341-1510915933:491122..491247Clytia hemisphaericaexon
TCONS_00060405-exon-scaffold_341-1575043694:491122..491247TCONS_00060405-exon-scaffold_341-1575043694:491122..491247Clytia hemisphaericaexon
TCONS_00060405-exon-scaffold_341-1491911889:491417..491756TCONS_00060405-exon-scaffold_341-1491911889:491417..491756Clytia hemisphaericaexon
TCONS_00060405-exon-scaffold_341-1510915933:491417..491756TCONS_00060405-exon-scaffold_341-1510915933:491417..491756Clytia hemisphaericaexon
TCONS_00060405-exon-scaffold_341-1575043694:491417..491756TCONS_00060405-exon-scaffold_341-1575043694:491417..491756Clytia hemisphaericaexon
TCONS_00060405-exon-scaffold_341-1491911889:492373..492654TCONS_00060405-exon-scaffold_341-1491911889:492373..492654Clytia hemisphaericaexon
TCONS_00060405-exon-scaffold_341-1510915933:492373..492654TCONS_00060405-exon-scaffold_341-1510915933:492373..492654Clytia hemisphaericaexon
TCONS_00060405-exon-scaffold_341-1575043694:492373..492654TCONS_00060405-exon-scaffold_341-1575043694:492373..492654Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_341supercontigscaffold_341:489979..492654 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.676845	1.10595	0.647173	0	5.58629	2.80985	0	0.787494	1.99072	2.11484	1.81358	0	1.241	1.65955	1.93784	0.631242	1.16914	0.938323	0.53264	0.559948	2.95313	2.93279	1.71998	3.35728	0.511533	0.944229	4.8815	3.73632	1.39255	0
Blast
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BLAST of TCONS_00060405 vs. Swiss-Prot (Human)
Match: ERAP1 (Endoplasmic reticulum aminopeptidase 1 OS=Homo sapiens GN=ERAP1 PE=1 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 3.521e-30
Identity = 74/230 (32.17%), Postives = 128/230 (55.65%), Query Frame = 3 
Query:  411 YHNIRLPKYIRPIHYVVALEIDMQLEFVDGTTNIKTEVSKRSKYIMVHA--MXXXXXXXXXXXXDTQEKYPLE-KEHGDNGGFLYKQNLYFVIEAHDYFEVG-NYSLEFKFDYKLRKDLAGFYLSTYNNTKGQIVKVAATQFEPVDARSAFPCFDEPAMKATFDISMKRDKSYLALSNMPVIR--TEADGDEVTNYFQTTPIVSTYLIVFVICDFEKRMVVANTKVPTNV 1082
            ++ IRLP+Y+ P+HY + +  ++      GTT ++   S+ +  I++H+  ++ +   +     +   + PL+  EH         +     + A +   VG  Y++   +   L +   GFY STY   +G++  +A+TQFEP  AR AFPCFDEPA KA+F I ++R+  +LA+SNMP+++  T A+G  + ++F  T  +STYL+ F+I DFE    +  + V  +V
Sbjct:   49 WNKIRLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISRATLRKGAGERLSEEPLQVLEH--------PRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFHGFYKSTYRTKEGELRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAEG-LIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSV 269
The following BLAST results are available for this feature:
BLAST of TCONS_00060405 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ERAP13.521e-3032.17Endoplasmic reticulum aminopeptidase 1 OS=Homo sap... [more]
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